trnag-ucc-19


Basic Information

Item Value
gene id trnag-ucc-19
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 33029550 ~ 33066274 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnag-ucc-19
gcattggtggtatagtggtgagcatagctgccttccaagcagttgacccgggttcgattcccggccaatgca
>TU905376
gctcctacattctgcaggttatctaaaataataaatgttgtgcgacgttgaaccaacaagtgcatatcaaaatagatttgcagtcctatcgccaaaaccattcagccaccttgtcctgcgcccaagaggtgatagtcggcgttccgacaagatctgcctgtctgagattgttcaaggatctgcaaaagggctcatccgggatttgaacccgggacctctcgcaccctaagcgagaatcatacccctagaccaacaagCCTTAtaccaaaagttatttttttgctttctgcagcaatgacagtgaagatatcgattgacgtgtccatggtgcttggaacgattgaacatcatgtgagtgttttgtgctttacttgtgagcataacagtcttccaaaatcttgaccatgtttcagttcaaatcttctgtagttcatctgctgtgtctttcacattctgtcttgttcagtcgcgacagcaaaatgatgacgagtttttacaaattaataaagtgcaaaatgagatcaattcatttttttaaaaacaaatgaaaaaataagacttccaaaagaatggaactcatttattttgagtcaaatgacgcaaaggtacgtgaatcaaagtcaattaattttgaaaatacccattcaaatagatccgttttcaactagagagattaagactcggcgtatccgtctcaatcctccacaactgcttatgttaaccctccatatctgcagtgaaagatggtggacctagatcggtttttgtcaaaccatgagacaatacctataatcggtcttctcacaaaaacatctctagcttccgaaccgttgacctacaaattcatatgaccactctctggaatgaggagaccctcacgaacacggtggtattctcaatttttctctacatcccccacaagtgtcaggagactcgtctgaagtcacaagcgtctatgtgccaagttctgtttgtagaatccaaaatcttgggctacaaactaatgtgaccccacttgtcgcaatgttctccgttttgccctacgttcccaacaagtgtcacgggactaatctgaaggtaacctgtagtgattaaaatgatagattttttaaccagggacctctcgcaacctaagccataatcatacacctaaaccgtgaaagtgaattatcactttccaccaaaatgacggtcaaattatgagtcgatgtctcaatgttgctactgagctgcacatagcattggtg
>TU905381
ttatcactttccaccaaaatgacggtcaaattatgagtcgatgtctcaatgttgctactgagctgcacatagcattggtggtatagtggtgagcatagctgccttccaagcagttgacccgggttcgattcccggccaatgcagagcctgaggaattcatttgttttaggggctggatgtcatttcaagtgtattacatttgaatcattatccttgtacttggaagtcagaattgctcctacattctgcaggttatctaaaataataaatgttgtgcgacgttgaacca
>TU905379
ctccacaactgcttatgttacccctccatatctgcagtgaaagatggtggacctagatcggtttttgtcaaaccatgagacaatacctataatcggtcttctcacaaaaacatctctagcttccgaaccgtttgacctacaaattcgtatgaccactctctggaatgaggagaccctcacgaacacggtggtattctcaatgtttctctacatcccccacaagtgtcaggagactcgtctgaagtcacaagcgtctatgtgccaagttctgtttgtagaatccaaaatcttgggctacaaactaatgtgaccccacttgtcgcaatgttctccgttttgccctacgttcccaacaagtgtcacgggactaatctgaaggtaacctgtagtgattaaaacgatagattttttaaccagggacctctcgcaacctaagccataatcatacacctaaaccgtgaaagtgaattatcactttccaccaaaatgacggtcaaattatgagtcgatgtctcaatgttgctactgagctgcacatagcattggtggtatagtggtgagcataggttgacccgggttcgattcccggccaatgcagagcctgaggaattcatttgttttaggggctggatgtcatttcaagtgtattacatttgaatcattatccttgtacttggaagtcagaattgctcctacattctgcaggttatctaaaataataaatgttgtgcgacgttgaaccaacaagtgcatatcaaaatagatttgcagtcccatcgccaaaaccattcagccaccttgtcctgcgcccaagaggtgataatcggcgttccgaccagtggcccaagatctgcctgtctgagattgttcaaggatctgcaaaagggctcatccgggatttgaacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnag-ucc-19 False 72 mRNA 0.56 1 33061709 33061780
TU905376 False 1247 lncRNA 0.41 2 33029550 33032181
TU905381 False 289 lncRNA 0.42 2 33061638 33063828
TU905379 True 906 lncRNA 0.44 2 33063086 33066274

Neighbor

gene id symbol gene type direction distance location
trnag-ucc-18 NA coding upstream 434 33061204 ~ 33061275 (+)
trnag-ucc-17 NA coding upstream 939 33060699 ~ 33060770 (+)
trnag-ucc-16 NA coding upstream 1444 33060194 ~ 33060265 (+)
trnag-ucc-15 NA coding upstream 1949 33059689 ~ 33059760 (+)
trnag-ucc-14 NA coding upstream 6645 33054993 ~ 33055064 (+)
trnag-ucc-20 NA coding downstream 434 33062214 ~ 33062285 (+)
trnag-ucc-21 NA coding downstream 3104 33064884 ~ 33064955 (+)
trnag-ucc-22 NA coding downstream 3609 33065389 ~ 33065460 (+)
trnag-ucc-23 NA coding downstream 4114 33065894 ~ 33065965 (+)
trnag-ucc-24 NA coding downstream 4619 33066399 ~ 33066470 (+)
trnag-ucc-3 NA non-coding upstream 589 33032239 ~ 33061120 (+)
trnag-ucc-10 NA non-coding upstream 12274 33046280 ~ 33049435 (+)
G795141 NA non-coding upstream 32528 32971724 ~ 33029181 (+)
G795146 NA non-coding upstream 99338 32960420 ~ 32962371 (+)
G795016 NA non-coding upstream 232582 32751174 ~ 32829127 (+)
G795437 NA non-coding downstream 44469 33106249 ~ 33106723 (+)
G795438 NA non-coding downstream 54427 33116207 ~ 33123231 (+)
G795442 NA non-coding downstream 81601 33143381 ~ 33143673 (+)
G795445 NA non-coding downstream 126568 33188348 ~ 33233498 (+)
G795447 NA non-coding downstream 169295 33231075 ~ 33232779 (+)
G794886 LOC106577459 other upstream 474321 32583606 ~ 32587388 (+)
G794893 NA other upstream 558960 32502396 ~ 32502749 (+)
G794892 NA other upstream 559354 32501847 ~ 32502355 (+)
zgc:112271 bola2 other upstream 936858 32122682 ~ 32124851 (+)
LOC110531915 LOC106595846 other upstream 1305264 31753182 ~ 31757502 (+)
G796495 LOC106613263 other downstream 1059642 34121422 ~ 34121740 (+)
G797056 NA other downstream 1494151 34555931 ~ 34556622 (+)
G797932 pphln other downstream 2303208 35364988 ~ 35372148 (+)
G799053 NA other downstream 3251349 36313129 ~ 36316805 (+)
G799578 LOC106571900 other downstream 3972638 37034418 ~ 37035918 (+)
ostc ostc coding upstream 489899 32520078 ~ 32539651 (+)
rpl34 rpl34 coding upstream 530948 32494490 ~ 32498602 (+)
LOC110531922 LOC106577451 coding upstream 915251 32111792 ~ 32114299 (+)
LOC118965935 NA coding upstream 950827 32077618 ~ 32078723 (+)
trnag-ucc-25 NA coding downstream 630 33066904 ~ 33066975 (+)
trnag-ucc-26 NA coding downstream 1135 33067409 ~ 33067480 (+)
trnag-ucc-27 NA coding downstream 2404 33068678 ~ 33068749 (+)
trnag-ucc-28 NA coding downstream 3815 33070089 ~ 33070160 (+)
G795010 NA non-coding upstream 290487 32738405 ~ 32739063 (+)
G795002 NA non-coding upstream 303271 32725966 ~ 32726279 (+)

Expression


Co-expression Network