XLOC_026659


Basic Information

Item Value
gene id XLOC_026659
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 40180136 ~ 40181654 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053081
aacaATCTTGTCCGGGTTATTAAAGAAACACATTCAGGTAATTCATTCATGAAAAACATGTCTTTATTTTCATAATGTCTGACAACTGCAGTCCGAAGACGATCTGActgacgacaacaacaacaaatctttTTGTGTACATCTTTCAATCACAAGATGGGATATATTGCCTGCAGATACAGTGTTTAAAAAGAGCCACGGACAAGGTCaaggcatttttttttactgatgcaAAGTTTGCTCCTTCAAAATAGAAAAACCAAATAAATTGACAACTCATTTATCACCTATGCTTTTCAGAGGTGCAAATTTTGACCCAGTAAAACATACCTCAGTAAATGACTGTGAAACTGTCCCGTAACGTTGGTCCATgaagcacttttttattttattttattttatttttttaacaggagTGCAGAGTTACAGGAAACACAAGACCCTGATCACTTTCACAAACATACTCCATTTATATGAACTGAAGTACAATCACTATCATTTGTGTATGCTGCCCTATATCTCTGAACACAGAAACATCACCAAAATCTACCACAGATCAGACAAAGCACTGATGATGGTCACCAAAAcaccttcttcttttttttaaactacagcCAAGTGACGGATTGCTGAAGGGTGTCCAAAACGCATCACTTTGAATAAAACTCAAACGTACACTGCTCTTCAAAAGATTGAGCAGCGATCTAGCAGTTAAAGATCCCTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053081 True 724 lncRNA 0.36 2 40180136 40181654

Neighbor

gene id symbol gene type direction distance location
XLOC_026658 drg2 coding downstream 17269 40153819 ~ 40162867 (-)
XLOC_026656 myo15aa coding downstream 43393 40056485 ~ 40136743 (-)
XLOC_026657 BX649547.1 coding downstream 91335 40088685 ~ 40088801 (-)
XLOC_026655 llgl1 coding downstream 125387 39970355 ~ 40054749 (-)
XLOC_026654 BX649356.3 coding downstream 222662 39957358 ~ 39957474 (-)
XLOC_026660 znf598 coding upstream 3599 40185253 ~ 40202607 (-)
XLOC_026661 flii coding upstream 24377 40206031 ~ 40232615 (-)
XLOC_026662 top3a coding upstream 53634 40235288 ~ 40254634 (-)
XLOC_026663 shmt1 coding upstream 79275 40260929 ~ 40276071 (-)
XLOC_026664 pdap1b coding upstream 96050 40277704 ~ 40284744 (-)
XLOC_026653 BX649356.2 non-coding downstream 228609 39945865 ~ 39951527 (-)
XLOC_026651 BX322795.1 non-coding downstream 530574 39649445 ~ 39649562 (-)
XLOC_026648 NA non-coding downstream 616835 39561784 ~ 39563301 (-)
XLOC_026666 NA non-coding upstream 214409 40396063 ~ 40405386 (-)
XLOC_026671 NA non-coding upstream 592764 40774418 ~ 40777723 (-)
XLOC_026680 CR769786.1 non-coding upstream 1130368 41312022 ~ 41312143 (-)
XLOC_026681 BX537310.2 non-coding upstream 1214469 41396123 ~ 41512210 (-)
XLOC_026687 NA non-coding upstream 2001699 42183353 ~ 42205112 (-)

Expression


Co-expression Network