XLOC_002666


Basic Information

Item Value
gene id XLOC_002666
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15716739 ~ 15724104 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005752
GTCTTCAaggtgtaagaattgaaatattgcaaatattctgatgtctttgacaattcaaaacatgagctgaaaacagagactggtaacttcacaactcagcaaggggaatgcgggaaaaaccagttcctgctgcatttgcatctgagtctgcttcatccccccaactcacacatatggtcatttcaatgtttgaatgttctagaattaaccaaactgactttaactatcatgtttgatatcatttgaaatgtctcagtgcgattggtacaatggtctcattctctcagaaatagacataatcagaacaataaatatataacttcaggcatcttttgatccactgtgaggggtgtgacactaagtgtgaatgccttttgttatacattcacacccccttccttgagggaattcttggattatttaaggtaaggacTAAGAAaagctcagggcgattctgcctaaccagatcagcccataacatggggtctgccccatgttatgtatatttcaaagtcagGCGAGTTACGTCTTTCCAGCACAAAATGGATTTATATCAACCAAGAGGTTTGGATCTTCTATTCTATCTTCAGCTGCTGTGGCGGACCAATAACAAAGAACACTCCAGATCCGGTCcacatcaaacaaatacaaatgagggCAACAAAAGGTTAGGCCATAACCTGAGAGGCCAAAAGTCTTCCATCTTGCATCTCAAAGCAAGAACCCCTGTGGTGCTAACACCTCACCTGCAGTGAGTCCTCTGAAAAAAGTCTTTGATCAGTCATCAGAATAACAATTATCCACAGCTGATCTTATCAATGGATTCAGCATTGTAGGAGGCTTTGTGATTTCACAAAACAGAGACATGAAAGATCTCATAGTTAAAATCTTCCCAAATTGCTTAATAGCAATGGGACTAAAACCCTGGTTACCTAGAGGCGATAAAGAACTTTACTGCATTGTTCCTGCAAAGACCAATAGCAACAGACTCTATTGTCACGAATCCTGGtggcatttttaaatttgtttttatactataCACATGTTAAACCACATGTCCTGTATGAAAATGGAATTAACTATGTTGAAATTCATGATATTTGTTTCTTTGATCTCCAAAAGTAGAAAACTCTGCTATCCCCTGTATAGCTGCAGTTTAAACTACAAACAGGAGTATAGAGTGTGATAATTAAATTaaccatgaaaatgcattttttacaggATCCAGCTTTGAACATTGCACCTTAACATGCTCCGTAAAAGATATTATATGGAATCAATTTGAGCCGGAACACACCTCATGTTCACATTCTTATGCTGGCTCCCTGCTAAGACAGGACTAAAATTTTGCAACACAATTATAAAAGTTGATTACCATTGTTCGGAGCATTACACTGACACACAGCCACAGGTAAACCCAGGCACATAGATAACACCTTAGTCTTCAAAGACCCAGGAGCCAAATCTCCTTAATTGAGATCGTTTGTCCatgtttatacaaacaaaacacattagcctCACACACATAGAACAGAATAATTAATCTGATGACAGACGAGACAACAAACACCCTCTGACACCCTCTgtcagctgaaaagaaattacACATTTGCATGGCTTTTACAACAAATTGATGGTATAAAACTTCAATAAAGGCGAATTTGCCGATAAATTTAAGGATAGATACACTGACTGTTATGAGGATGGTTGACAAACCAGAGGGCCCCTGGTTTTCCAATCTATCACCAATAACAGGTATAAGTGctaaagtgattaaaattaaacCGAAATGAGGACACTTCTAATAATCACTAGGacatttaaatttgacaaataccATCAATTGTGTTCAAGCCCCCCCacacgcacataaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccacacaacatacacacacaaacacacacattattatagatataccttcataattatggttaaataatgtgattactatcatgtatgacaaatatcttcacgtttttttcattttgaaaatgaatgtcatttatttgaatgtattgtcatgatgatatgttttatgatgcatactgcttgttatactgttttaataagttgcactgaccttttgatagctttaccttgagtaattcaaaccaagaatatttaatattctccCTATCATTATACCCTATCTCAGTGGTGACAAAGACTTATCTGTTTTTGATTGGACCATTTAAACAGATTGAAAGAGACCTGAGACCAGTTGTACGACTCGCACTTGCTGACTTTTAtgttttgatcatatattttatgcTTAACCTCATGACTTTCTCCAATGCAGAATGACACAAGTTCATAACTGTTCAATCGCTGAGCCATCAAGTTGCTGTTTAGGTGTCCGAGAGAAGGCAGTGTATACACACTGTAGACCCCCACATGCCGATGTCTGCATATCTGGAGATGACCAGATTCATCAGAAGAAGCAGACTATGAGAAGCCCACACGACGTGGACACTTTTGTCAGGGGAAGGACACAGTGGAAGCTATAAAGGCCTGTATGGACTGAATGAGCAGTGCATTCGGGTCAGGCTCATCAAAAGAGGTGAAAACGAGCCTGGACCTGTTTAGCTACCTGCTGAACACGACTTACAACTGATAATGCTGCAGAGACTGTCTTGAATTGCCCCTGAACGACCTCAACAAGGATACATAGTGACCCCATGGACACATTTATATCTGACCCACGGGATCAAATGGGGGTtatctgtaagaattgaaatattgcaaatattctgatgtctttgacaattcaaaacatgagctgaaaacagagactggtaacttcacaactcagcaaggggaatgcgggaaaaaccagttcctgctgcatttgcatctgagtctgcttcatccccccaactcacacatatggtcatttcaatgtttgaatgttctagaattaaccaaactgactttaactatcatgtttgatatcatttgaaatgtctcagtgcgattggtacaatggtctcattctctcagaaatagacataatcagaacaataaatatataacttcaggcatcttttgatccactgtgaggggtgtgacactaagtgtgaatgccttttgttatacattcacacccccttccttgagggaattcttggattatttaaggtaaggacTAAGAAaagctcagggcgattctgcctaaccagatcagcccataacatggggtctgccccatgttatgtatatttcaaagtcaggtatgcatcttttcatcttggatttatctttgataatttgatgttttgtattgatcatttatgaattgactgattgaattggcataatacatttacctgactaataaattgttatgttttgaatgattcaaacagagttcgtgttattatctttagtagattgtggtaatttcatagcaccacaagcccctgttcaggttagtagcggactagaacacggtagacggagcattgcggcacgttacacgatgtctctagagctccgactaacaaattggcatttattcatgtatacttaggctgtaaaaggatatctaaggggatagtccttcacccgataaacttttaatactatttagatagtatagtgattattcaaagttactactagtttaagtacgactggtctgcttaattctatagtaatgatcgttatatgactaaatagctctgtctgatttaggaggtagcagacctatggggaccgcataaaaaatatcctaatctgagtaagtagggttctgcctttttaggatagcggtcaatcgcccctgtttagtgaccaagactgacatgcttgtgcttaagaaattgtatactcggccggtacaagattcaggatgttatagagatcccaatgaacgagaataacataaaatgatgaaccgaagagaatattcaatcataatctaaaataatgtgaaaggaaacaaaataaccttctcaatgttttataattggagtcagataaaacgaggataaacatattaatattctaaaccatctcatactaaaattggagtcagatatgagttaagtttaatataaatcaacattgtgcactggaaagaccgaacatgcagtgaaccttcatccaccattggataccgtcattggaccaactgggtggac

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0021532 neural tube patterning biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0035239 tube morphogenesis biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0001756 somitogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0006396 RNA processing biological_process
GO:0031016 pancreas development biological_process
GO:0045165 cell fate commitment biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0060429 epithelium development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0021906 hindbrain-spinal cord boundary formation biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0021915 neural tube development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0048339 paraxial mesoderm development biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0010002 cardioblast differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0030902 hindbrain development biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0005634 nucleus cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005752 True 4214 lncRNA 0.38 3 15716739 15724104

Neighbor

gene id symbol gene type direction distance location
XLOC_002665 mamdc2b coding downstream 43877 15648857 ~ 15672862 (-)
XLOC_002664 smc5 coding downstream 71765 15617741 ~ 15644974 (-)
XLOC_002663 sgtb coding downstream 311175 15381972 ~ 15405564 (-)
XLOC_002662 pum3 coding downstream 376289 15321522 ~ 15340450 (-)
XLOC_002661 spp1 coding downstream 587968 15120711 ~ 15128771 (-)
XLOC_002667 tjp2a coding upstream 91761 15815865 ~ 15879569 (-)
XLOC_002668 pip5k1ba coding upstream 157205 15881309 ~ 15964029 (-)
XLOC_002669 aldh7a1 coding upstream 282801 16006905 ~ 16028082 (-)
XLOC_002670 si:dkey-184a18.5 coding upstream 337551 16061655 ~ 16067194 (-)
XLOC_002671 fbn2a coding upstream 589747 16313851 ~ 16495597 (-)
XLOC_002660 CT027832.1 non-coding downstream 630442 15082410 ~ 15086297 (-)
XLOC_002656 NA non-coding downstream 673991 15031006 ~ 15042748 (-)
XLOC_002657 NA non-coding downstream 681779 15032972 ~ 15034960 (-)
XLOC_002653 CT027820.1 non-coding downstream 984340 14732283 ~ 14732399 (-)
XLOC_002648 BX000705.1 non-coding downstream 1785043 13931569 ~ 13931696 (-)
XLOC_002673 NA non-coding upstream 1282121 17006225 ~ 17010898 (-)
XLOC_002674 NA non-coding upstream 1292695 17016799 ~ 17027111 (-)
XLOC_002676 NA non-coding upstream 1361420 17085524 ~ 17088911 (-)
XLOC_002678 BX324123.4 non-coding upstream 1380194 17104298 ~ 17132910 (-)
XLOC_002684 FP091248.1 non-coding upstream 1618261 17342365 ~ 17342481 (-)

Expression


Co-expression Network