XLOC_026661 (flii)


Basic Information

Item Value
gene id XLOC_026661
gene name flii
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 40206031 ~ 40232615 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051926
CGGGCGCGCGGGGGGCGGGGAGTGTTTGTTCCACCAGCCGCTGCCAAACAGAAATAGGCTGCTCTGCTGCCATATCCCGAATTAGACATGGCTGCGACTGGAGTTCTCCCCTTTATCCGGGGAGTAGACCTGAGTGGGAATGACTTTAAGGGGGGCAATTTTCCTGAACATGTCAAGTCTATGACCAGTTTGCGATGGCTGAAGCTGAACAGAACGGGCCTTTGCTATCTTCCAGAGGAACTAGCCTCCCTACAGAAACTGgAACATTTGTCTGTGAGTCACAACAGTCTCACAACGCTGCACGGAGAATTATCAAGTCTTCCCAATCTGAGGGCGGTTGTGGCCAGAGCAAACAACCTGAAGAACTCTGGTGTTCCTGATGATATTTTTCAGCTGGATGATCTTTCTGTGCTGGATCTGAGCCACAACCAACTAACCGAAATCCCCCGGGACTTGGAGAACTCCAGAAACATGTTGGTTTTAAACCTCAGTCACAATAGCATTGATAACATACCAAATCAGCTGTTCATTAACCTCACTGATCTGCTGTACCTGGACCTAAGTGACAATAATTTGGACAGTCTGCCGCCTCAGATGAGACGATTGGTCCATTTGCAAACCCTCATACTCAACAATAATCCGTTGATGCACGCACAGCTGAGGCAGTTACCCGTTATGGTGTCTCTTCAGACCCTCCATTTAAGGAACACACAGCGTACTCAAAATAATATGCCCACCAGTCTGGAGGGCCTCTCTAACCTAACAGATGTGGACCTGTCCTGTAATGATCTGACGCGGGTTCCAGAATGCTTGTATTCTCTAGTTAATCTCAAACGGCTGAATCTGAGCAGCAATCAGATATCTGAGCTCTCACTGTGCATAGATCAGTGGACCAAACTCGAAACGCTCAACCTTTCTAGAAATCAGCTCACATCTCTGCCTTCTGCCATTTGCAAGCTGTCCAAGCTGAAGAAGCTTTACGTGAACTCCAACAAAATCGATTTTGATGGCCTTCCATCTGGTGTTGGGAAATTATCTAACCTTGTTGAGTTCATGGCTGCGAATAATAATTTGGAGCTTGTTCCAGAAGGGCTATGCAGGTGTGGAAAATTAAAGAAGCTGGTTTTGAACAAGAACCGGCTTGTGACATTACCAGAAGCTATCCATTTCCTCACTGAGCTGGAGGTTTTGGACGTCCGTGAGAATCCAAATCTAGTCATGCCCCCTAAACCAGTGGACAGGACAGCTGAGTGGTACAACATAGACTTTTCATTGCAGAACCAGCTACGATTGGCTGGTGCATCTCCAGCCACTGTAGCAGCAGCTGGTGGAGGAAATAGCCCACGAGACCATATGGCCAGGAAAATGAGGCTGAGGAGATGCAAGGACTCTGCCCATGATGATCAAGCTAAACAGGTGCTAAAGGGAATGTCAGATGTGGCTCAGGAGAAGAACAAATCCATTGAGGAGAACGGAGACTTGAAATACTCTGATCTGAAAACCAAGCGCTGGGATAAGAACCTGGAGAAGCCTCAGCTGGATTACTCTGAGTTCTTCTTGGAGGATGTGGGCCAGATTCCCGGCGTTTCGGTTTGGCAGATTGAAAACTTTATACCCATCCAGGTAGACGAGGCCTTCCATGGGAAGTTCTATGAGGCAGACTGTTACATCATTCTCAAGACATTCTTGGATGAAAACGGAGCTCTAAACTGGCAAATCTTTTATTGGATCGGGCAAGATGCTACTCTTGATAAGAAAGCCGGCGCTGCTATCCATGCTGTCAATCTCCGTAACTATTTGGGGGCAGAGTGCAGGACTATCAGAGAagaaatgggagatgagagtgAAGAATTCACTGCGGTGTTTGATCATGAAATCTCCTACATTGAGGGTGGAACAGCCAGTGGATTTTACACGGTAGAGGACACACAATATCCAACCAGGTTGTACAGGGTTTATGGGAAAAAGAACATCAGATTAGAGTCCGTGCCTCTAAAAGCATCCTCACTCGACCCACGATTTGTCTTTTTGTTGGATACTGGTCTTGAAATCTATGTTTGGAGAGGAGGCAATGCAACACTCGGTGGTACTACAAAAGCAAGGTTATTTGCTGAGAAAATCAACAAAAATGAGCGAAAAAGCAAAGCAGAGATAACAACTTTGATGCAAAATCAGGAACCTCCTGAATTCTGGGAAGTTCTCGGAGGACAGCCGGAGGAAATCAAGAAGCATGTGCCTGATGACTTCACTCCTATCAGACCCAAGCTCTATAAGGTTGGCTTGGGCTTGGGATACCTTGAACTTCCTCAGATCAACTACAAACTGTCTGTGGAGCACAAGGACAAGCTCAAACTAGATGTTGTTCCAGAGCTCAGACTGGTACAAGGTCTATTGGACACTAAAGGTGTCTACATATTGGATTGTTGGTCTGATGTGTTCATTTGGATTGGCCGTAAGTCTCCACGTCTCGTCCGGGCAGCTGCATTGAAGCTGGGTCAGGAGGTTTGCGGAATGCTCCATCGGCCAAAACACGCTGTGGTCATCCGTAATCTGGAGGGCACCGAATGCCAgGTCTTCAAATCCAAGTTCAAGAATTGGGATGATGTGCTGAAGGTGGATTATACCAGGAATGCAGAGAGTGTAAAGCAGGAGGCGGGTTTGTCTGGTAAAGTGAAGAAAGATGTAGAGCAGAAGGACCAGATGAAAGCTGACCTGACGGCTCTGTTCCTGCCTAGACAACCAGCCATGCCCCTTACAGAGGCGGAGCAGATGATGGAGGAGTGGAACGAGGATTTGGATGGCATGGAGGGATTCGTTCTGGAGGGGAAGAAGTTTGCCCGTTTACCAGAAGAAGAATTTGGTCACTTTCATACTCAGGACTGCTATGTCTTTCTCTGCAGGTACTGGGTGCCAGTGGAGTACGAGGATGATAAGGAGAAAGGCAAAGAGAAAGGAGAAGAGGGAGACGATGAGGAGAAACAGCCTGAAGAAGACTTCCAGTGTGTGGTTTACTTCTGGCAAGGCCGTGAAGCCTCCAACATGGGCTGGCTGACCTTCACCTTCAGCCTGCAGAAGAAGTTTGAGAGCTTGTTTCCAGGAAAACTAGAGGTTGTGAGGATGACGCAACAGCAGGAGAATCTCAAGTTCTTGTCACACTTCAAGAGGAAGTTTATCATCCACAAAGGCAAGAGGAAGCTGAAAGTGGACAGTGTGCAGCCAAGCTTATATCACATCAGGACAAATGGAAGCGCACTATGCACCaggactaTTCAAATAGCCACAGACTCCAGTAACCTAAACTCTGAATTCTGCTTCATATTGAAGGTGCCATTTGAAAGCACAGACAATCAGGGAATAGTGTACACATGGGTGGGACGAGCAGCAGACCCAGATGAAGCTAAACTGGCAGAGGAGATCATGAACACCATGTTTGATGACACTTACAGCAAACAGGTTATAAATGAAGGAGAAGAGCCAGAAAATTTCTTCTGGGTTGGCATTGGCTCACAGAAAACGTATGATGAGGATGCCGAGTACATGAAATATGCTAGACTGTTTAGGTGCTCAAATGAGAAAGGCTACTTTGCTGTATCAGAGAAGTGCTCAGACTTCTGTCAAGATGACCTGGCTGATGATGACATCATGCTTCTGGACAATGGGAAAGAGGTTTACATGTGGGTTGGCACACAGACAAGCCAAGTGGAGATTAAACTGAGCTTGAAGGCTTGTCAGGTCTATATTCAACACATGAGGTCGAAGGATACGGAGAACCCCAGAAAACTGCGCCTGGTGCGCAAGGGCAACGAGCCTCACTGTTTCACCCGCTGTTTCCACGCATGGAGCGCCTTCAAGACGGCACCCGCATAAATCAGCAAAGTCTGTCTGAATACAGTACGAGCATTCAGAAAACAAACAGCACACTCACAGCAGACTCTCCATTATTAATGTGCACTGCATCACTCTCTTTAAAAAGCTCACGTACGTGTTTGCTAGTTAAAGCAATATTATCGaatttttatatttctgtgtaGATTTAAGAGTCTAAACGATACAGCACTGGGGGGTAAgccccagcaagcatttttgttttttaaaagatgtcaaataaatgtctaatagacgtctaaacatagttgtcttggctaaaacaagagtaaatttcagtgaaaatctaatagatgtctaagaataggccaaaactagactagtcgtcaaataagCAGAAATGAACGACTACACgtataaagtctgtctatttgagGACTAGTCTAGATTTGGGCTaatcttagacgtctattagattttcactgataaCCCAAGTTTAGTCTTGTTTTGGTCGAGCTATCTAcgtttggatgtctattagaggtctattaaacacaaaattgtttgctggggcATTTTCTCGAGAGAACGGATGCTGTATTTCTGAAGGGACGAGTTTTAGAGGAACATATCGATTGAGGGAGAGTctactttttgttttaaaagtcATCTGGCTGCACAATTGTTGTGAATTGTCATCTGTTTACATTTTCTAAATCCTGCAGCAGATCTCTTCAAGATGGCTCATATCATTTGTTTTGGGTTGACGTTCTTAAGTTTTATTTCGTAGATGCATATCACACTTATTGCCAAGGCTTTCAGGTATTGGAAGTTCAACACCCGGGTCAGTTTTTATTGCTGATTTGGTGCCTAtcacaacagttttttttaaatgatgtttgccTTTGAATGTTTGATTCCATCAGCCTGATCTATATTTTGCTTCACTGTTGGGATGTTGACTTGCCAATGCTGATGGAACAATGAATTGCACAGTTCATGTGGGATGTTTTTTCATTTATGATCTAGTTTATGCTTTTATGCCCTTAAACTGCCCTGTATATCCATACCAATGCAGCAGTCGGCTAGGTTGAACCTGGTGATTTTTAATTCAAATCTCAATCTGTAATGGCTAAGACTGGCGCTACAGCTTGGTCTCCACATATCAAGGCTGATTTCGCTGTTTAGCCAACACCGTTTCATCAAACAcagattgtgctttttttttttttttttaaagaaaaaaaactttagggTCCTGTGTGTGGATCACTTTTTGCTTTTTGAGTATTTGTTGATCTTGGACAGGGAAATTGGTTTAGCCAAGGAAATGaatattcttattttaattatGCTAATCAAATTTGTTATGACGGTCATAAAAGGGATTAGGTAGAGGTAAAACGCGTTTTTGCTATTGAAGGCGAGTTGCCCTGTTCTGTTTCTTCTCGTCACAGCAGCTTTTTTGTctgcataatatatataaatgtatttctaTGTGTACAAATATTTTCTGCCACTTATTTCACCTGCAGATGCtctatttatgtattttgtattgAATAAAGTTTCATCGCA

Function

symbol description
flii Predicted to enable actin filament binding activity and phosphatidylinositol-4,5-bisphosphate binding activity. Acts upstream of or within sarcomere organization. Predicted to be active in actin cytoskeleton; cytoplasm; and nucleus. Is expressed in myotome. Orthologous to human FLII (FLII actin remodeling protein).

GO:

id name namespace
GO:0008154 actin polymerization or depolymerization biological_process
GO:0045214 sarcomere organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0051014 actin filament severing biological_process
GO:0051016 barbed-end actin filament capping biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005546 phosphatidylinositol-4,5-bisphosphate binding molecular_function
GO:0051015 actin filament binding molecular_function

KEGG:

id description
ko02040 Flagellar assembly
ko02044 Secretion system
ko02035 Bacterial motility proteins

ZFIN:

id description
ZDB-GENE-071212-3 Predicted to enable actin filament binding activity and phosphatidylinositol-4,5-bisphosphate binding activity. Acts upstream of or within sarcomere organization. Predicted to be active in actin cytoskeleton; cytoplasm; and nucleus. Is expressed in myotome. Orthologous to human FLII (FLII actin remodeling protein).

Ensembl:

ensembl_id ENSDARG00000059701

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051926 True 5403 mRNA 0.44 30 40206031 40232615

Neighbor

gene id symbol gene type direction distance location
XLOC_026660 znf598 coding downstream 3424 40185253 ~ 40202607 (-)
XLOC_026659 NA coding downstream 24377 40180136 ~ 40181654 (-)
XLOC_026658 drg2 coding downstream 43164 40153819 ~ 40162867 (-)
XLOC_026656 myo15aa coding downstream 69288 40056485 ~ 40136743 (-)
XLOC_026657 BX649547.1 coding downstream 117230 40088685 ~ 40088801 (-)
XLOC_026662 top3a coding upstream 2673 40235288 ~ 40254634 (-)
XLOC_026663 shmt1 coding upstream 28314 40260929 ~ 40276071 (-)
XLOC_026664 pdap1b coding upstream 45089 40277704 ~ 40284744 (-)
XLOC_026665 atp5mf coding upstream 64170 40296785 ~ 40301467 (-)
XLOC_026666 NA coding upstream 163448 40396063 ~ 40405386 (-)
XLOC_026654 BX649356.3 non-coding downstream 248557 39957358 ~ 39957474 (-)
XLOC_026653 BX649356.2 non-coding downstream 254504 39945865 ~ 39951527 (-)
XLOC_026651 BX322795.1 non-coding downstream 556469 39649445 ~ 39649562 (-)
XLOC_026671 NA non-coding upstream 541803 40774418 ~ 40777723 (-)
XLOC_026680 CR769786.1 non-coding upstream 1079407 41312022 ~ 41312143 (-)
XLOC_026681 BX537310.2 non-coding upstream 1163508 41396123 ~ 41512210 (-)
XLOC_026687 NA non-coding upstream 1950738 42183353 ~ 42205112 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_03982069_03996142 FLII, FLII.S coding CI01000046 null 3982069 ~ 3997163 (+)
bowfin (Amia calva) AMCG00018513 flii,LOC107703428,LOC107674686 coding CM030135.1 CM030135.1 13138873 ~ 13159845 (-)