XLOC_026665 (atp5mf)


Basic Information

Item Value
gene id XLOC_026665
gene name atp5mf
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 40296785 ~ 40301467 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051933
aaggtcgttggttcaagtcccggcttggtcagttggcatttctgcgggAGTACTTTTCCTATATAttgacatcatttattttcaggaAAATGGTGTGTTATTCCATAACATTATGAAAATATTTTCATCCACTTCCTCCACTGAGCAGTCACTCCCTCACCCACTCACACGCTCTCTAAACTCCGCCTCACAGCTTGTCCGTCGACGTCACTTCATTTTACTCCCAGCATTCCCTGCTGCAGCTCTCATCTTGAAGTTCAGAGCAAGATGGCGGATAAAGCAGTTTCCCTGGCCGAGAAGAAGCTTATGGACGTGAAGCTCGGGCAACTGCCAGCTTGGCTCGGAACAAGAGACTTCACCCCAAATGGAGTTGTTAGAGGAATTCGTGGAGGTTATGAGAGGTattacaacaaatacatcaatgtGAAGAAGGGTGGCATTGGTGGAATTGCCATGTTCCTTGTTGGTTACGTTGTCCTGAGCTACGCCTGGGAATACGACCACATCAAGCACGACAGGTGGAGGAAGTACCACTAAACCAATGGACCACCGGGCCGCTCAAATCCTATCTTCTGCAGCAGTGTGATCACCTCTCAGCTTTCTCTCTTTGTGACTGTTGTGACCAAgaataaaatgacatttatttaaattggACTCTTTATTGAACGCATACACTAACAGACCATTAAAGCTGTAGTTCACTTAAATGAAAATTCCCTCACTGTTTACTCCAGaggttttaaattttatatattttttctgttgaacatgttttgaagaatgttggaggcGAAAGCAacaactgacttccatagtaagtcAATGGCTGCTCTTTTCcccctaacattcttcaaaatatcttcttttgtgttgaacataaACTCCAACAGGTTTGACGTGatgggtaattttttttttttggtgaactcgCTATGTACTGGAGTTTGACTACTCGAGATGAATGTCTTAAATTAAATTGGTTGTATTTAAGATTTTA

Function

symbol description
atp5mf Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in mitochondrial ATP synthesis coupled proton transport. Predicted to act upstream of or within ATP biosynthetic process and ion transport. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be part of mitochondrial proton-transporting ATP synthase complex. Orthologous to human ATP5MF (ATP synthase membrane subunit f).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0042776 mitochondrial ATP synthesis coupled proton transport biological_process
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050309-87 Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in mitochondrial ATP synthesis coupled proton transport. Predicted to act upstream of or within ATP biosynthetic process and ion transport. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be part of mitochondrial proton-transporting ATP synthase complex. Orthologous to human ATP5MF (ATP synthase membrane subunit f).

Ensembl:

ensembl_id ENSDARG00000037867

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051933 True 997 mRNA 0.42 4 40296785 40301467

Neighbor

gene id symbol gene type direction distance location
XLOC_026664 pdap1b coding downstream 12041 40277704 ~ 40284744 (-)
XLOC_026663 shmt1 coding downstream 20714 40260929 ~ 40276071 (-)
XLOC_026662 top3a coding downstream 42151 40235288 ~ 40254634 (-)
XLOC_026661 flii coding downstream 64170 40206031 ~ 40232615 (-)
XLOC_026660 znf598 coding downstream 94178 40185253 ~ 40202607 (-)
XLOC_026666 NA coding upstream 94596 40396063 ~ 40405386 (-)
XLOC_026667 actb2 coding upstream 224640 40526107 ~ 40529804 (-)
XLOC_026668 rnf216 coding upstream 299303 40600770 ~ 40664913 (-)
XLOC_026669 uts2r5 coding upstream 378464 40679931 ~ 40681001 (-)
XLOC_026670 smurf1 coding upstream 388745 40690212 ~ 40768548 (-)
XLOC_026659 NA non-coding downstream 115131 40180136 ~ 40181654 (-)
XLOC_026657 BX649547.1 non-coding downstream 207984 40088685 ~ 40088801 (-)
XLOC_026654 BX649356.3 non-coding downstream 339311 39957358 ~ 39957474 (-)
XLOC_026653 BX649356.2 non-coding downstream 345258 39945865 ~ 39951527 (-)
XLOC_026651 BX322795.1 non-coding downstream 647223 39649445 ~ 39649562 (-)
XLOC_026671 NA non-coding upstream 472951 40774418 ~ 40777723 (-)
XLOC_026680 CR769786.1 non-coding upstream 1010555 41312022 ~ 41312143 (-)
XLOC_026681 BX537310.2 non-coding upstream 1094656 41396123 ~ 41512210 (-)
XLOC_026687 NA non-coding upstream 1881886 42183353 ~ 42205112 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_03943890_03945302 ATP5J2 misc CI01000046 null 3943794 ~ 3945500 (+)
tiger barb (Puntius tetrazona) G151020 NA non-coding NC_056720.1 CM032089.1 8412443 ~ 8412693 (-)