rl32 (rl32)


Basic Information

Item Value
gene id rl32
gene name rl32
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 34052296 ~ 34057570 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614371.2
GTCCTTAACGGAAGTCCTTTCCTTTCGGCCGTTGCTGACTCCCTTCCTAAAATTACACAGGTCACCATGGCAGCCCTCCGACCTCTTACCAAGCCGAAGATCGTCAAGAAGAGGGTTAAGAAGTTCATTCGCCATCAGTCTGACAGATATGTCAAGGTCACGAAAAGCTGGCGTAAGCCCAGGGGTATTGACAACAGAGTCCGCAGGCGGTTTAAGGGCCAGATGCTGATGCCCAACATCGGTTATGGTAGCAACAAGAAGACTAAGCACATGCTGCCCTCTGGCTTCAGGAAGTTCCTGGTGCACAACATCAAGGAGCTGGAGGTCCTCATGATGAGCAACAAGACCCATGCTGCAGAGATTGCCCACAACGTGTCTTCCAAGAACAGGAAGCTGATTGTGGAGAGAGCAGCCCAGCTGGCCATCAAGATCACCAACCCCAATGCCAGACTCCGCAGCGAGGAGAACGAGTGATCCAGCCATTATTTCCCAATAAAACACATGTTTAAATGTG
>NM_001160636.2
CCTTTCCTTTCGGCCGTTGCTGACTCCCTTCCTAAAATTACACAGGCGGGTCACCATGGCAGCCCTCCGACCTCTTACCAAGCCGAAGATCGTCAAGAAGAGGGTTAAGAAGTTCATTCGCCATCAGTCTGACAGATATGTCAAGGTCACGAAAAGCTGGCGTAAGCCCAGGGGTATTGACAACAGAGTCCGCAGGCGGTTTAAGGGCCAGATGCTGATGCCCAACATCGGTTATGGTAGCAACAAGAAGACTAAGCACATGCTGCCCTCTGGCTTCAGGAAGTTCCTGGTGCACAACATCAAGGAGCTGGAGGTCCTCATGATGAGCAACAAGACCCATGCTGCAGAGATTGCCCACAACGTGTCTTCCAAGAACAGGAAGCTGATTGTGGAGAGAGCAGCCCAGCTGGCCATCAAGATCACCAACCCCAATGCCAGACTCCGCAGCGAGGAGAACGAGTGATCCAGCCATTATTTCCCAATAAAACACATGTTTAAATGTG

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02912 RP-L32e, RPL32; large subunit ribosomal protein L32e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614371.2 False 514 mRNA 0.51 4 34052296 34057570
NM_001160636.2 True 503 mRNA 0.51 4 34052311 34057570

Neighbor

gene id symbol gene type direction distance location
LOC110531947 LOC106571849 coding upstream 126512 33863184 ~ 33925784 (+)
LOC110531945 LOC106571845 coding upstream 366265 33549171 ~ 33686031 (+)
LOC110531943 LOC106571843 coding upstream 664330 33361262 ~ 33387966 (+)
trnag-ucc-138 NA coding upstream 800929 33251296 ~ 33251367 (+)
trnag-ucc-137 NA coding upstream 802337 33249888 ~ 33249959 (+)
LOC110531951 LOC106571855 coding downstream 499 34058069 ~ 34128871 (+)
LOC110531954 LOC106566658 coding downstream 223771 34281341 ~ 34298265 (+)
LOC110531955 143b2 coding downstream 286785 34344355 ~ 34349297 (+)
LOC118966029 NA coding downstream 328314 34385884 ~ 34392962 (+)
LOC110531960 NA coding downstream 552720 34610290 ~ 34612491 (+)
G796441 NA non-coding upstream 9202 34042436 ~ 34043094 (+)
G796394 NA non-coding upstream 16528 34035400 ~ 34035768 (+)
G796331 NA non-coding upstream 98463 33952831 ~ 33953833 (+)
G796325 NA non-coding upstream 103238 33947625 ~ 33949058 (+)
G796173 NA non-coding upstream 136307 33910984 ~ 33915989 (+)
G796456 NA non-coding downstream 4871 34062441 ~ 34062644 (+)
G796462 NA non-coding downstream 11540 34069110 ~ 34069322 (+)
G796463 NA non-coding downstream 12022 34069592 ~ 34069837 (+)
G796481 NA non-coding downstream 44078 34101648 ~ 34101847 (+)
G796489 NA non-coding downstream 52566 34110136 ~ 34110359 (+)
G794886 LOC106577459 other upstream 1464908 32583606 ~ 32587388 (+)
G794893 NA other upstream 1549547 32502396 ~ 32502749 (+)
G794892 NA other upstream 1549941 32501847 ~ 32502355 (+)
zgc:112271 bola2 other upstream 1927445 32122682 ~ 32124851 (+)
LOC110531915 LOC106595846 other upstream 2295851 31753182 ~ 31757502 (+)
G796495 LOC106613263 other downstream 63852 34121422 ~ 34121740 (+)
G797056 NA other downstream 498361 34555931 ~ 34556622 (+)
G797932 pphln other downstream 1307418 35364988 ~ 35372148 (+)
G799053 NA other downstream 2255559 36313129 ~ 36316805 (+)
G799578 LOC106571900 other downstream 2976848 37034418 ~ 37035918 (+)

Expression


Co-expression Network