LOC110531951 (LOC106571855)


Basic Information

Item Value
gene id LOC110531951
gene name LOC106571855
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 34058069 ~ 34128871 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615495.2
atagtgcacataaaaatgaTGTGTTTTCAACTCTGATGGTTTTGTCAGAAATGTTGCGTTATATAGCGCATGTTTCTTCTCTGATCTTGCCACATGTGCTCGCAGATACGGTGCAGATATAGCCTGCCTACGAGATGACATTATGGACAAAACAGTAGCCACGCATTATTGGGAAGGAGCATTTAAgttcatcaccttgcactttcaccaaaCCGATGAAGTTCCTGAtatatttcatctgtagcctaataaaataCATGCTTTCCCAAGTCATTGTGGGGGGGACCACATGTCAAGTTTGGTACAATGTGACAGTTATTATATCAGTATTTCCACTGCCATGTCTCCCATAGTTTATTGACATTTGGCAAGTTCATGACAAATTAGCTTTTTCAATCAGGCCTGTCCTGACTATTTTTATCCGTCATGTATTTTATGCGCATTAAGAttagatggaaacctggttactggAGACATGTGATCTGTGTGCAACACAAGGGAAGTTTTAGACCTGTGTGACGTGTCTCGACTGAAAATATGGGATAGCACTGACTACTATTCCCAAGTGCATCAGTGTTTGTTGTGCTAACAGCCTTGTGGCACTTCAGCCGGATGTGCAGTCATCCTTGCCAACACCCTGTAGTGATCCTTAGCCCCATACTGACAATTTAGGATTTAGTAAAGCAATGGAAACTTGTATGAAAGATGTTTTCAACTTCCTATTCATATGCTCTCAACAGGGATTTATGAGGCTCGAAGTAGTTGAATCCCCTTTGGGATCTTTGAAGATCTTGAAGGAACTTCATAAAAATAATAAGATATGTCTGGGACATTAATCCGACGACTACACGATTATCATGAGTACAATACGAGACTGATAACCAGATGCTTTCAAATCAAGATATATCTTGATTTAATTTGCAAATATGTTGTAATTTAACACTACTTAGTTTTGTGGATTATTCAAAAATATTGATGAAACCAAAGCGGTTTGCTTTCTTCCACACATGACTTTCATTTCTTCTCTGCTTATGACAGTTGGGCCTCCATAAATTAAAGTAATTTAATGTAGACAACCGCATATATATTTTGTTGGAATTACAGAAATGAACATGTCCTTTTCAATCATGCACATTCATGCTGCAATTCTGAAATGCTATATTTTGGCATGAATAAATAGCCAGTGTCTACCGCCAGCCACCTGGGGTGAAAGTTTCCATTGCGTTCTGGCAGGCAgtgccatctctgcagcatttaGCTCCTATCCATCTGTTCATGTAAAATACTGTGTCAGTGATGAAAATCACAAACAATATAACATGCATTACATTTACATAACCTTACCTGAAATGAATAACAGTGGACAGCATCTTCATGTTTTTGTTTGCATGCCATTTTAATTTCAcattttgtgggtgtgtgtgtgagagaagcaGACACTGATGGGTTTATAAATATGCATAGATTTACGAATATGTATATCTGATTTTTCGTAGGTttagttttttagtttttttttctatTCTCCATCTCATTTGTAGGCTTATTCAGACACACCTGAGGATGTTGGGACTCCTCCAGTTAGGGTTGTGAAGAGACCGCAGGACGGAGCTAGAGGAAAGCGTTTGGAGGAAAGTGATCGAAAGGAGAAAGCGAGAATGTTTTTACTTTCGGTGACTAGAGAGTGAATGTGGCAGACAGAATAATATGTGGAAAGGGACGCATGGGCAACCCAAAGCACATCACCCTGGCCTTCTCTCAGACCGAGTCcatgaggaaaggaggaggaaagaggaggatgtTCTCCTTTTCACTCCGTTGTCGGCTCGGCATCATCAGAGGGAGGACCAAAGATGATGGGCCATACTCTAAGGGCAGCAAGGACTCTGGAGGGACCGACCATGCCCTTACCTCCAGGAGACGCAGTATTAAAGAGGACTACTGGGGCATGACCACGTTGGACCTGATTAAAAGGGAAGGCAGCAGCCTGGGCCTCACCATCTCCGGGGGGTCCGATAAGGACGGCAAGCCCAGAGTGTCAAACCTGCGGCCAGGTGGGCTAGCTGCCAGGAGTGACCAGCTGAATGTGGGAGACTACATCAAGTCAGTGAACGGCATCAACCTGTCCAAGCTCCGCCACGATGAGATCATCAGCCTGCTGAAGAACATAGGAGAGCGTGTGGTTCTGGAAGTGGATTACGAACTACCTCCTTTTGtCCAGAACACTCCCACAAGTGTTATAGCTAAGACTATAGAGGTGTGCCTATACAAGGAGGGCAACAGCTTTGGATTCGTCATGAGAGGAGGGTTCCATGAAGACTGGCACAGGTCTCGTCCTCTGGTAGTGACCTACGTACGGCATGGGGGTCCAGCTGATCGAGAGGGCACACTGAAGGCTGGTGACCGTGTGCTGAGCATAGGCGGGAAGCCCTTACACCGAGAGAAGCATGCTGACGCTCTGACTATGCTGATGCAGTGTAGCCAGGAAGCCCTGTTCCTGATTGAGTATGATGTCTCCCTCATGGAGTCAGTGCAGCAGGCCTCTGGCCCCCTACTGGTGGAGATAGTGAAGTGTCCTGCAGCCAGCCTGGGTGTTAGCCTAGCTACTGCTGTGTACAGGAACAAACAGGTCATCGTCATCGACAAGATCAAACAAGCCAGTGTGGTGGAAAGgTGTGGGGCATTGCATATAGGTGATCTCATTCTGTCTATAGACGGGACCAGCACTGAGCACCTTTCCCTGATGGAGGCCACGCAGCTATTGGCCCAAACCTCTGACATTGTCAAATTGGAGATCCTTCCAGCCAATCAGAGCAGACTTCCCATGAGACACCAAGACACAGTGAAAGTACAGAAAAGCAACCTTCAACACTGGGAGCCCACTGCCAACTACAGCCACACCCAGCACTGCAAGACATGGAGCAGTCCCAGCCACCAGCTCAACCAGCAGGACCACTGCAAATCTCTGGTGTGTGGTGGCTTCTCCCCTTCCTCCACAGCCACCTCAGGGTACAGCAGCACCCTGCCCTGCCCCATCCCCCCCGTCGCCCCCCCAAGCCCCCACAGCACGACACACAAGAGATGCCAGCGGAGTAAGGAGCACAAGAGCTCACTGTCCCTAGCATCCAGCTCAGTGGGCCCTGGGGGTCAGGTTGTTCACGTGGAGACCAGCGAGGTCGTCCTGAGGGGGGATCCACTCCTAGGGTTTGGGGTTCAACTGCAGGGGGGTGTTTTTGCCACAGAGACCCTGTCTGCCCCCCCAGTCATCCGCTTCATCGAGCCCGACAGCCCTGCCGAAAGATGTGGACTTCTGCAGGTGGGGGACAGACTCCTGTTAATCAACAGAATCCCTACAGAGGATGGAACACTGGAGGAAGCCAAACAACTACTGCGAAATGCCGCTCTGGCCAATAAGGTCACTCTGGAGGTCGAGTTTGATGTAGCAGAATCAGTGGTTCCAAGTAGTGGCATGTTCCATGTGAAGCTGCCCAAGAGGAGGGGAGTAGATCTTGGCATCACAATCAGTGCAAGCAAGAGACCCGAAAAAGCTCTCATCATCTCTGACATCAGAAAAGGAAGCATAGCTCACAGGACAGGCACGTTGGAGCCAGGGGACAGGCTGCTGGCTATCGACAACGTGCGTCTGGAGAACTGCACCATGGAGGACGCCATGCATGTGCTGCAGCAGGCAGAGGACATGGTCAAGCTCCGGATCCAGAAGGACGAGGATAACGCTGaTGAGCTGGAGATGTCTGGTTCCATTATCTACACAGTGGAGCTGAAGCGTTTCAACGGCCCGCTGGGTATTACCATCTCAGGCACAGAGGAGCCTTTTGACCCTATCGTCATCTCaggcctcacaaagaagggcctGGCTGAAAGGACTGGTGCCATCCATATAGGGGACCGTGTCCTGGCCATCAACTGTGTGAGTCTGAAGGGGAAACCCCTGAGTGAGGCCATCCATCTACTCCAAATGGCCGGAGAGACTGTCACCCTTAAGATCAAGAAACGCCAAGACGAATCGGATGGGCAGCAGATGTCGGAGCAGGCAGGATTCCCGAGCGACACAGAGGATGAGCTGATTGACTACCAGAAGACCAGTAAACACTCAGGGGTGTACTCTGCCACCGGGCCCAGCGTGTACTCTGCCATGAGCTCCTGGGACGGTTCCGGCATCGACACTGGCTACGGCAGCCAAGGAACGTATCTCCACAGAGGTGCAGATTTGACCTTCCAGCCTAACGAGTGGAGACGCACCAAACCGACCAGGACTCACCTCACCTCCACTGGCCTTACCGCCCTTACCCACCACTCCCAACTCTACGATGGGAGATACGATGAGGATGACTGGGATAAGGCTGCTGGATACGCCAGTCCCCCTTGTTGCCATGGCACCCTGAACCAGGAGGACACCTTCTGGTCCCAGGCCCTGCAGGACCTAGAGACCTGCGGCCAATCAGAGATACTCAGGGAGCTGGAGGCGTCCATGACAGGCAGCACTCTTAGCCTGTATCTGGCGTCCCAGGAAGTGCTAAAGAGCAGAATCAGTCCTGTGAAGAGGGGTCCCATCCATGACGAGCCTAAAACCAAAGGCAACCTGCAGAGGTCCAACAGGACCAGGGACACACCccccagagggagaggagagacccaGGAGACCACTTCCCCTACAGCCCTGGAACTGCTGAAGGTGACCCTGAGGAAGGACCCAGACTGTGGAGACTTTGGCTTCAGTGTATCAGATGGCTTCCTAGAGAAAGGCATCTACGTCAACATGATCCGACCAGATGGTCCTGCCAACCAGGCCGGGTTGAAACCCTATGACCGCATTCTGCAGGTGAACAGAGCGAGGACCAGAGACTTTGACTGCTTCCTGACTGTTTCTCTCATCACTGAAGCAGGAGACAGCTTGGACCTGGTCATCAGCAGAAACTCCCTGGCACAGGCAGATAAGGGGCCACCTCAGGACTGCGAGGACCCTTCTGACTCCCTGTTAAGCTTCCTACATTATAGGACCAATAGTATCGCCCTGTGACAAAGGTCCAAGGGGGAGGTAATGGATAATAGCACGTTCAAATGGTGTTACACATTATACCATGTGACATGTAGGCACTGCACGTCTCACACACTGGTTTTGTTTTGTTATATCTCTTGTACATACACACAGAATCACATTCAGATGTGAGAATACATGTGTATGTGAATAAACA
>XM_021615497.2
tgcgcgtgtgtgagagaaagtgtgtgtgatgCAGGGGGTGTGACCGTGTCATGTGTGGGGAGAGTGTTTGACTGCTTCATCACACCCCTCTggtatagagagggagggagagcaaccTTCTCCGACACACTCACTGAGGCTGTGTGTAAtggttgctgtgtgtgtgagctggTATGTGAGCGTGAACGAGGGGTATGATTATTCCTATGGAATAGGAAGAGCAACCATGAATACCTCAAAAGGAACCTCAGAATGGTGGGAAGAAAAGGAGAGATGACTATTCCTTTGATGCTTTGATCATTTTGTTTCCCTGCTTTCAGTTTGTTGTGGGAATTACTTATTttagcaatatatatatatattttttttaccaagtTTAAACAGTTGaaggacatagaaatagacatctATGGAATAGGATTTTTCATGCAATAAGTGAAGTCAAGATATGCTTCAAGTAGAACAGAGATATGAAGAGAAGAACATTGCTTTTTGTCCTGCTTGTTAGCGAGTGAGACTGGGTCACAGAGGACACCGTATTCCCAGGGGCACCTCGCTGGGTCTGCTGGCCACTACAACAGAATAGCGACTTTTCTCTCAGGTCGGATGTTTTGACAGGACTGCAGCCATGCTTTGTGGTCTGAGGAGAGAGGCGAAGAACAGCAGCATCGATGATGGGCCATACTCTAAGGGCAGCAAGGACTCTGGAGGGACCGACCATGCCCTTACCTCCAGGAGACGCAGTATTAAAGAGGACTACTGGGGCATGACCACGTTGGACCTGATTAAAAGGGAAGGCAGCAGCCTGGGCCTCACCATCTCCGGGGGGTCCGATAAGGACGGCAAGCCCAGAGTGTCAAACCTGCGGCCAGGTGGGCTAGCTGCCAGGAGTGACCAGCTGAATGTGGGAGACTACATCAAGTCAGTGAACGGCATCAACCTGTCCAAGCTCCGCCACGATGAGATCATCAGCCTGCTGAAGAACATAGGAGAGCGTGTGGTTCTGGAAGTGGATTACGAACTACCTCCTTTTGtCCAGAACACTCCCACAAGTGTTATAGCTAAGACTATAGAGGTGTGCCTATACAAGGAGGGCAACAGCTTTGGATTCGTCATGAGAGGAGGGTTCCATGAAGACTGGCACAGGTCTCGTCCTCTGGTAGTGACCTACGTACGGCATGGGGGTCCAGCTGATCGAGAGGGCACACTGAAGGCTGGTGACCGTGTGCTGAGCATAGGCGGGAAGCCCTTACACCGAGAGAAGCATGCTGACGCTCTGACTATGCTGATGCAGTGTAGCCAGGAAGCCCTGTTCCTGATTGAGTATGATGTCTCCCTCATGGAGTCAGTGCAGCAGGCCTCTGGCCCCCTACTGGTGGAGATAGTGAAGTGTCCTGCAGCCAGCCTGGGTGTTAGCCTAGCTACTGCTGTGTACAGGAACAAACAGGTCATCGTCATCGACAAGATCAAACAAGCCAGTGTGGTGGAAAGgTGTGGGGCATTGCATATAGGTGATCTCATTCTGTCTATAGACGGGACCAGCACTGAGCACCTTTCCCTGATGGAGGCCACGCAGCTATTGGCCCAAACCTCTGACATTGTCAAATTGGAGATCCTTCCAGCCAATCAGAGCAGACTTCCCATGAGACACCAAGACACAGTGAAAGTACAGAAAAGCAACCTTCAACACTGGGAGCCCACTGCCAACTACAGCCACACCCAGCACTGCAAGACATGGAGCAGTCCCAGCCACCAGCTCAACCAGCAGGACCACTGCAAATCTCTGGTGTGTGGTGGCTTCTCCCCTTCCTCCACAGCCACCTCAGGGTACAGCAGCACCCTGCCCTGCCCCATCCCCCCCGTCGCCCCCCCAAGCCCCCACAGCACGACACACAAGAGATGCCAGCGGAGTAAGGAGCACAAGAGCTCACTGTCCCTAGCATCCAGCTCAGTGGGCCCTGGGGGTCAGGTTGTTCACGTGGAGACCAGCGAGGTCGTCCTGAGGGGGGATCCACTCCTAGGGTTTGGGGTTCAACTGCAGGGGGGTGTTTTTGCCACAGAGACCCTGTCTGCCCCCCCAGTCATCCGCTTCATCGAGCCCGACAGCCCTGCCGAAAGATGTGGACTTCTGCAGGTGGGGGACAGACTCCTGTTAATCAACAGAATCCCTACAGAGGATGGAACACTGGAGGAAGCCAAACAACTACTGCGAAATGCCGCTCTGGCCAATAAGGTCACTCTGGAGGTCGAGTTTGATGTAGCAGAATCAGTGGTTCCAAGTAGTGGCATGTTCCATGTGAAGCTGCCCAAGAGGAGGGGAGTAGATCTTGGCATCACAATCAGTGCAAGCAAGAGACCCGAAAAAGCTCTCATCATCTCTGACATCAGAAAAGGAAGCATAGCTCACAGGACAGGCACGTTGGAGCCAGGGGACAGGCTGCTGGCTATCGACAACGTGCGTCTGGAGAACTGCACCATGGAGGACGCCATGCATGTGCTGCAGCAGGCAGAGGACATGGTCAAGCTCCGGATCCAGAAGGACGAGGATAACGCTGaTGAGCTGGAGATGTCTGGTTCCATTATCTACACAGTGGAGCTGAAGCGTTTCAACGGCCCGCTGGGTATTACCATCTCAGGCACAGAGGAGCCTTTTGACCCTATCGTCATCTCaggcctcacaaagaagggcctGGCTGAAAGGACTGGTGCCATCCATATAGGGGACCGTGTCCTGGCCATCAACTGTGTGAGTCTGAAGGGGAAACCCCTGAGTGAGGCCATCCATCTACTCCAAATGGCCGGAGAGACTGTCACCCTTAAGATCAAGAAACGCCAAGACGAATCGGATGGGCAGCAGATGTCGGAGCAGGCAGGATTCCCGAGCGACACAGAGGATGAGCTGATTGACTACCAGAAGACCAGTAAACACTCAGGGGTGTACTCTGCCACCGGGCCCAGCGTGTACTCTGCCATGAGCTCCTGGGACGGTTCCGGCATCGACACTGGCTACGGCAGCCAAGGAACGTATCTCCACAGAGGTGCAGATTTGACCTTCCAGCCTAACGAGTGGAGACGCACCAAACCGACCAGGACTCACCTCACCTCCACTGGCCTTACCGCCCTTACCCACCACTCCCAACTCTACGATGGGAGATACGATGAGGATGACTGGGATAAGGCTGCTGGATACGCCAGTCCCCCTTGTTGCCATGGCACCCTGAACCAGGAGGACACCTTCTGGTCCCAGGCCCTGCAGGACCTAGAGACCTGCGGCCAATCAGAGATACTCAGGGAGCTGGAGGCGTCCATGACAGGCAGCACTCTTAGCCTGTATCTGGCGTCCCAGGAAGTGCTAAAGAGCAGAATCAGTCCTGTGAAGAGGGGTCCCATCCATGACGAGCCTAAAACCAAAGGCAACCTGCAGAGGTCCAACAGGACCAGGGACACACCccccagagggagaggagagacccaGGAGACCACTTCCCCTACAGCCCTGGAACTGCTGAAGGTGACCCTGAGGAAGGACCCAGACTGTGGAGACTTTGGCTTCAGTGTATCAGATGGCTTCCTAGAGAAAGGCATCTACGTCAACATGATCCGACCAGATGGTCCTGCCAACCAGGCCGGGTTGAAACCCTATGACCGCATTCTGCAGGTGAACAGAGCGAGGACCAGAGACTTTGACTGCTTCCTGACTGTTTCTCTCATCACTGAAGCAGGAGACAGCTTGGACCTGGTCATCAGCAGAAACTCCCTGGCACAGGCAGATAAGGGGCCACCTCAGGACTGCGAGGACCCTTCTGACTCCCTGTTAAGCTTCCTACATTATAGGACCAATAGTATCGCCCTGTGACAAAGGTCCAAGGGGGAGGTAATGGATAATAGCACGTTCAAATGGTGTTACACATTATACCATGTGACATGTAGGCACTGCACGTCTCACACACTGGTTTTGTTTTGTTATATCTCTTGTACATACACACAGAATCACATTCAGATGTGAGAATACATGTGTATGTGAATAAACA

Function

NR:

description
glutamate receptor-interacting protein 2-like isoform X3

GO: NA

KEGG:

id description
K20251 GRIP; glutamate receptor-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615495.2 False 5213 mRNA 0.49 24 34058069 34128871
XM_021615497.2 True 4031 mRNA 0.53 24 34064382 34128871

Neighbor

gene id symbol gene type direction distance location
rl32 rl32 coding upstream 499 34052296 ~ 34057570 (+)
LOC110531947 LOC106571849 coding upstream 132285 33863184 ~ 33925784 (+)
LOC110531945 LOC106571845 coding upstream 372038 33549171 ~ 33686031 (+)
LOC110531943 LOC106571843 coding upstream 670103 33361262 ~ 33387966 (+)
trnag-ucc-138 NA coding upstream 806702 33251296 ~ 33251367 (+)
LOC110531954 LOC106566658 coding downstream 152470 34281341 ~ 34298265 (+)
LOC110531955 143b2 coding downstream 215484 34344355 ~ 34349297 (+)
LOC118966029 NA coding downstream 257013 34385884 ~ 34392962 (+)
LOC110531960 NA coding downstream 481419 34610290 ~ 34612491 (+)
LOC110531961 LOC106571864 coding downstream 514048 34642919 ~ 34682784 (+)
G796441 NA non-coding upstream 14975 34042436 ~ 34043094 (+)
G796394 NA non-coding upstream 22301 34035400 ~ 34035768 (+)
G796331 NA non-coding upstream 104236 33952831 ~ 33953833 (+)
G796325 NA non-coding upstream 109011 33947625 ~ 33949058 (+)
G796173 NA non-coding upstream 142080 33910984 ~ 33915989 (+)
G796517 NA non-coding downstream 51298 34180169 ~ 34180461 (+)
G796558 NA non-coding downstream 172617 34301488 ~ 34301885 (+)
G796601 NA non-coding downstream 193717 34322588 ~ 34323051 (+)
G796604 NA non-coding downstream 197233 34326104 ~ 34326407 (+)
G796617 NA non-coding downstream 213835 34342706 ~ 34342932 (+)
G794886 LOC106577459 other upstream 1470681 32583606 ~ 32587388 (+)
G794893 NA other upstream 1555320 32502396 ~ 32502749 (+)
G794892 NA other upstream 1555714 32501847 ~ 32502355 (+)
zgc:112271 bola2 other upstream 1933218 32122682 ~ 32124851 (+)
LOC110531915 LOC106595846 other upstream 2301624 31753182 ~ 31757502 (+)
G797056 NA other downstream 427060 34555931 ~ 34556622 (+)
G797932 pphln other downstream 1236117 35364988 ~ 35372148 (+)
G799053 NA other downstream 2184258 36313129 ~ 36316805 (+)
G799578 LOC106571900 other downstream 2905547 37034418 ~ 37035918 (+)
G799858 LOC106571908 other downstream 3438374 37567245 ~ 37570411 (+)

Expression


Co-expression Network