LOC110531954 (LOC106566658)


Basic Information

Item Value
gene id LOC110531954
gene name LOC106566658
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 34281341 ~ 34298265 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474782.2
AAACTGAAACACCCCTATCAGTTGCCATTTTACTTTGGACAAGGCTTGACTAGATTTGTACCTGAAAACGCAATATTTGATGAGGAGGCGTGAGTGCAGTTCTCTTTAGTATTTTGTAAAGAAAGTGTGTCCTTGTTCAAATTTGATCGGAGTTATCGGCGCAAGGGAGCAGCGGTTTGCACAAGAAGGGCTCATCTCGGACGTGAGTATTGCCAATGCTAACAGATGGTATATGCCATGAATTGTAAGGAAGCTGCAGAGAAGGTTGTCTTGTCATGGTCGCGATTCACCTCAGCTGGCCAAACTACTCTACTGGAGACCCTGAAGGCATTCAGTCCTATGTCAGATGACCTTTTTGACAGTGAAAAGGAACTGGCCACTTTTATTGAGGGACTCAAAGATGAAGGTCACAAGCCTACTGTACTTAAAAGTAAGGATGTCTATGGTTACAGGTCTTGTACTTCAGTACTCAGGCCTTTAGTAAAGACGCAGAGTACTCTGGACATTGCTACCTCAAAGGTTAAAAAGACTGGCAAAAGGAAGAGTCGAAAACCCCTGGACAAGAACACTGAAATCAACTATGCTTTGTTAAGTGCAGCAGCGAAAGTCGTCCTGAAGAATCAACCCAAGATTCTTTTGACAAATCTGTCAAAGGAGTCTCTCAAACAGACGGTCCTCTCAAAACCACCGGACTTGGCTGTTGGCCCTGTCCAGATGCAGTCATACATAAGACTGACAAACATAATTGGACCCTCTACAGGCCACACAGCAAGACTGCagttccacacaggtgtggtcaGAAGAGGTAACGGTACCCAACTCTCATCGGCCACCATCTCTAACAGGGACACAAGCACTGCATTTGGAAGGTACCGGAAACTCCGAAAAATCAGTCACTTTGAGGAGAGTGAACTTTGTGCCTTGCCCAGTCAATATCATTGGAGTCCCTGTTCCTGCCATGCTGCACAACGACCGGTTTTTGAAGGAATGCAACAGAATGCCTTGCTGGAGGGACCAGAAAATGAGAAGGACTGATGAGGCTGAGGACTAACTCTGTGAAGAGGCCCAGAAAAGGGGTCTGGCTGGTCAAAGAGCAGGAAGACCTCTGACTGAGCCAGAGCAACCGGAGGTTCGAGGTGAAGGTTGACTCAATCATTGACAAGGTGAGGTAAGCCCAGAAGATCCTTCGAGGTCACCGGTCAGAGATTCGACCACTTATTGCCTACCCAATGTGAACGGCCGTCAAGAGTCTTATTCCTTTTGTCCTCCATGTACATGTTCAAACAAGTTTCAGTTACATCTCAAATCGAGACggtgctttgtcttggctgtgctcAGTTTGGGAGGATTGGGATTGTTTGGGATACTTTTCTGAGATTGGGAAAAATAATATTTATGTTCAATATATGTTTACATAAGAGGATGCTGGTGTATTACCTAAACATCCAAAAATCTGGTTTGTTTTGTCTAACACTGCACATAGTATAGGCCACCCCTTGACTGATAAGGGAAGGAATGGATAAGTGGTGAGTTGaacctacagtgtgtgtgtaatgttataTATATTCTTCTTTTGAACCATTATGAAATGTAATTTTCTTCTGTTTTATAAATGATACACACATCTTTGACAATGAAGTCATGTATAACTATGCAGCATTCACTTGCTAGAATATTACAGCTATTTTATATACATTTCTAGTCATGTCATTACTGTATTTTGGATAATTGGGTCCATTCAAAtagtgttttctttttttttttttttttttttttttttttttcatgtgttATGAAGGTAGTTTTGTTTTTGGATGTGATAAGTTAAGAGCTCCTATACATCTGTTAAAGGATGCATATGGAACAGGgcaaacaacaaccacagcgtAGCCTATTCACAACCAATACTGCCCTATCAAGCTAAAAAGGCAGTAACTGGTCAAATGAGCTGTTTATTTTTTTCCTTCATGAAATacatgtggacaagtatcctgcctcttGTGTTTTGGAGAAAGTGAGGGTCATGTTAGCAGTTACTGTGAAACAAGGTAAATAAAAGCCATCTTTCTCAGTTCTACACTATGAGCAGTTAGTGCCTTTTTTTTGCTTTGTAGGGCAGAATAGTAATCTTATTTCtcctaattaaaaaaataaaaagctacCTTTTTTTTATTTGCATTTGCATAGACATTAAAAAACATTTGGTTTCCTGCCAATTACGCGTGCCAGCACTCGATAAACTTGTGGAGTAGTACTCGATGCGTAGCACTGCAAACAGTGCAGCATTTTAGAGCTATCCTATGGAGAGAAATTGCAACAATGTTCTGACACTAGCGCAGTAATCAAATTACATGTCACaatgttttgattaatttacaGATGTCGATAGTGATGACAGGGTGATTTGCATAATATAGACTTTGCTGAAATGTGTTGATCATAACAGCTGTAATATAACCAGTAATTTTGTAATAAAATATGAGACGCTGGGATGAATTGATCAGGGGTATGTTCATTCAACAAATAACCCGTTTCTTGTACAAATCAATGCCCATACGTCCAAAAGGCTACTGACTGGGAGTGTAGTCATAAGGTCTGAATGCTAACTGCCACAATCTCATATTAGAAAACATGCCATGGTCTCTGCATATAAAACTCCGAGCATATTATTCAAGCCATTATTGAGGGTACAGAACAGCACACGAATAAGgcagcaagagagagggaagttAGCAGCCCATGGGACCACCAGGTGAATAGGTGCATGCATTTTCCACCTATCAAAACCCTGCTAACAACAAATGTTCCCACACCTTCAGAGCAAGTTCCCTTAAGAGTCTACcgttttcataggaatgttccaGTGGAGTGCAAGGACTGTTTCCAAGAGACCAGTCCGTTAATGTCAAACACAATTTACCCAGAACGTGGTTACCATGTTCACTGAATATTCAATGTTCTAGATACGTTTTCTAAGGGTTGGGAGAATATTCCAAtgtcccaccaaacatacacagaacatggcaAACTCTAAAATAtgaatgttctagacacgtttcattGTAACGTTGCCAGAACATTTGTGTCAGTTGTCCGGAAGTCTCCTGATGATCCCAAA

Function

NR:

description
coiled-coil domain-containing protein 71-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474782.2 True 3118 mRNA 0.41 2 34281341 34298265

Neighbor

gene id symbol gene type direction distance location
LOC110531951 LOC106571855 coding upstream 152470 34058069 ~ 34128871 (+)
rl32 rl32 coding upstream 223771 34052296 ~ 34057570 (+)
LOC110531947 LOC106571849 coding upstream 355557 33863184 ~ 33925784 (+)
LOC110531945 LOC106571845 coding upstream 595310 33549171 ~ 33686031 (+)
LOC110531943 LOC106571843 coding upstream 893375 33361262 ~ 33387966 (+)
LOC110531955 143b2 coding downstream 46090 34344355 ~ 34349297 (+)
LOC118966029 NA coding downstream 87619 34385884 ~ 34392962 (+)
LOC110531960 NA coding downstream 312025 34610290 ~ 34612491 (+)
LOC110531961 LOC106571864 coding downstream 344654 34642919 ~ 34682784 (+)
LOC110531155 LOC106571865 coding downstream 647875 34946140 ~ 35104382 (+)
G796517 NA non-coding upstream 100880 34180169 ~ 34180461 (+)
G796489 NA non-coding upstream 170982 34110136 ~ 34110359 (+)
G796481 NA non-coding upstream 179494 34101648 ~ 34101847 (+)
G796463 NA non-coding upstream 211504 34069592 ~ 34069837 (+)
G796462 NA non-coding upstream 212019 34069110 ~ 34069322 (+)
G796558 NA non-coding downstream 3223 34301488 ~ 34301885 (+)
G796601 NA non-coding downstream 24323 34322588 ~ 34323051 (+)
G796604 NA non-coding downstream 27839 34326104 ~ 34326407 (+)
G796617 NA non-coding downstream 44441 34342706 ~ 34342932 (+)
G796623 NA non-coding downstream 61634 34359899 ~ 34360091 (+)
G796495 LOC106613263 other upstream 159601 34121422 ~ 34121740 (+)
G794886 LOC106577459 other upstream 1693953 32583606 ~ 32587388 (+)
G794893 NA other upstream 1778592 32502396 ~ 32502749 (+)
G794892 NA other upstream 1778986 32501847 ~ 32502355 (+)
zgc:112271 bola2 other upstream 2156490 32122682 ~ 32124851 (+)
G797056 NA other downstream 257666 34555931 ~ 34556622 (+)
G797932 pphln other downstream 1066723 35364988 ~ 35372148 (+)
G799053 NA other downstream 2014864 36313129 ~ 36316805 (+)
G799578 LOC106571900 other downstream 2736153 37034418 ~ 37035918 (+)
G799858 LOC106571908 other downstream 3268980 37567245 ~ 37570411 (+)

Expression


Co-expression Network