LOC110531955 (143b2)


Basic Information

Item Value
gene id LOC110531955
gene name 143b2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 34344355 ~ 34349297 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615501.1
AACATGCATTGCAATCAGTGCTAATttgaagatactgtatgtgtatagcTGTTCCTCTTACTAGCCAAAACACACTGCATTGTCCTGGTTTAAATAAGGGGTTGAGGTAGCTGAATATAAATGATTAAACCCAATCGATATCATGTCTGTTATAGCGTGAAGTATTTTGTTGACatgaagctaacgttagctagctaaaggaAACAGAAGTGTCAATGTAGCGGAAGTGGTACTGCCCTGAACGATTCGAGGAGAGACACGGAGGACGGAGGCTGCATTGTCCAGAGAAAAAGCAGGAATTAGAGCCGTAAAAATTACTGAAAAATGGACAAGAACGACCTGGTACAAAAGGCCAAGCTCGCTGAGCAGGCTGAGCGCTATGACGATATGGCTGGGGCCATGAAGTCTGTGACGGAGCAGGGTGGGGAGCTCTCCAATGAGGAGCGCAACCTGCTGTCGGTGGCCTACAAGAACGTTGTGGGGGCACGCCGCTCATCCTGGCGGGTCATCTCCAGCATTGAGCAAAAGACAGAGGGCAATGAGAAGAAGCAAGCCATGGCCAAGGAGTACCGGGAGAAGATTGAAACCGAGCTGCAGGACATCTGCAACGATGTGCTGGGACTTCTTGACAAGTACCTGATTGCCAATGCCACTGCAGCTGAGAGCAAGGTGTTCTACCTGAAAATGAAAGGCGATTATTATAGATACCTGTCTGAGGTAGCAGCTGGGGATGCAAAAAAGACCACAGTGGATAATTCCCAGCAGGCATACCAGGATGCTTTCGACATCAGCAAGAAGGAGATGCAGCCAACACACCCCATCAGGCTCGGCCTGGCCCTCAACTTCTCTGTCTTTTACTATGAAATCCTCAACAACCCTGAGAAGGCCTGCACCTTGGCCAAGACGGCATTTGATGAAGCCATCGCTGAACTCGACACCTTAAATGAGGATTCCTACAAAGACAGTACTTTGATCATGCAACTACTAAGGGACAACCTGACTCTGTGGACATCGGAAAAccagggagatgagggagagaccggAGAAGGGGAAAACTAATGGAATTGCACTGTTAATCTATCTACACTCTTAAACACAAACAGCTTATAAACATCCACCTCCACTCCAtcaacccctcccccctctgtatGACAAGCAGCCGGAATTGTTCCTGACCAACTAGTTTATCCCTCTCAGGTCACTGAGGCGACAGGGTAATGTCCAGGTTGTCATTTTGTTTGTGAAAATAATGTGGTTCTATTGAGTAGCGAGTCCATGTTGCTGttatttagttgttttttttgtgtgtgtgtgcgctaaaTTGGGTGTGTGAATGACTGACTGTTGGGGGCGGGGGTTGTTAATTCTAATCGTCCTTAATTCCTTTGTTCCACCTAGCTGGTTGTGCATATTTTGTTACGGTCATTTTTTTTTGTGATTTGTCATGGTATTGCAGATTTAACGTATGGTTATTAAACTGGCAGTTAATTTTCACCAATGCTGTGATGCTAAGTGTTATATTTTCTTCCCCACATCACTATTGCTTTTAAAATTCAGACAGTACAATCCTGTATTTAACTAACAGTGCAATTCTGCTGTGTGCTCATACAGAAAGGAGGCAGGCTGTATTGTGACACTGGCATCTGGGCGTTTTGCTCTATAATCACTTTCACAATTTCAAGGTTTGATTAAGGGACCCCTTACTTCGCCATGTTAGATTTCCCCATTATAAGACATTCCACCAGAATTGTATTAGGCTTTATGAAAGGCAGAACTCTTTTTGAACAAAGTGGATTATTGTCCTAATGGTATAACTCAATGTTCAAGATCAAGCGCTGCTTGAACTCAATACAATGAAAATTGTATGTGCTTAAATGTTCCATGTATTTTGCAAGATTGACTATCTTTCTTTAAAACCTAAAGTAACTGAACGTTTTTTCAAAAATGTCTTATCACACTGTATCAACCCTGCTTGCAAAATATTCCTCTTAAAGCGGTTGTTTTCTCCAATGTTTCTGTGCCTGGTTTCCTATTAGACACTTCAAAATGGAAGACATGTTCATGTCGCTTGTTTGACTGCCAAGAAGTTGAAATTAAGCTTAGACCGTCTTCTATTCTCTCTTAGAATCTCAACATATTTGTTATGTATGTTCTATGGTTTGTAAGGTATGTCATAATTTGCTCTCATGCCCCTAAACTCTACTGCTTTGAACATAAGCCTCTGAAGCCATTGCTGTACAATTTATTGTGAAGCAGCAGATTGGAGAGCCAACTCATACCACAACCCAAGTAAGAAGCAGTGTCACAAATTCACAATATCAACACAACCATTACATCCCACATAGAGTAAGACACTCATCTACATATAGCGGCCAGTCTGCTTTCTTAGAGTCAATTCTCATCTTTATCTGAATAAATAAAATGTGGAACAGGC

Function

NR:

description
14-3-3 protein beta/alpha-2

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004497 monooxygenase activity molecular_function
GO:0019904 protein domain specific binding molecular_function

KEGG:

id description
K16197 YWHAB_Q_Z; 14-3-3 protein beta/theta/zeta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615501.1 True 2434 mRNA 0.43 6 34344355 34349297

Neighbor

gene id symbol gene type direction distance location
LOC110531954 LOC106566658 coding upstream 46090 34281341 ~ 34298265 (+)
LOC110531951 LOC106571855 coding upstream 215484 34058069 ~ 34128871 (+)
rl32 rl32 coding upstream 286785 34052296 ~ 34057570 (+)
LOC110531947 LOC106571849 coding upstream 418571 33863184 ~ 33925784 (+)
LOC110531945 LOC106571845 coding upstream 658324 33549171 ~ 33686031 (+)
LOC118966029 NA coding downstream 36587 34385884 ~ 34392962 (+)
LOC110531960 NA coding downstream 260993 34610290 ~ 34612491 (+)
LOC110531961 LOC106571864 coding downstream 293622 34642919 ~ 34682784 (+)
LOC110531155 LOC106571865 coding downstream 596843 34946140 ~ 35104382 (+)
LOC110531964 LOC106571867 coding downstream 866574 35215871 ~ 35360678 (+)
G796617 NA non-coding upstream 1423 34342706 ~ 34342932 (+)
G796604 NA non-coding upstream 17948 34326104 ~ 34326407 (+)
G796601 NA non-coding upstream 21304 34322588 ~ 34323051 (+)
G796558 NA non-coding upstream 42470 34301488 ~ 34301885 (+)
G796517 NA non-coding upstream 163894 34180169 ~ 34180461 (+)
G796623 NA non-coding downstream 10602 34359899 ~ 34360091 (+)
G796629 LOC106571860 non-coding downstream 16710 34366007 ~ 34367054 (+)
G796636 NA non-coding downstream 46203 34395500 ~ 34395818 (+)
G796638 NA non-coding downstream 48698 34397995 ~ 34398216 (+)
G796622 NA non-coding downstream 74679 34423976 ~ 34426889 (+)
G796495 LOC106613263 other upstream 222615 34121422 ~ 34121740 (+)
G794886 LOC106577459 other upstream 1756967 32583606 ~ 32587388 (+)
G794893 NA other upstream 1841606 32502396 ~ 32502749 (+)
G794892 NA other upstream 1842000 32501847 ~ 32502355 (+)
zgc:112271 bola2 other upstream 2219504 32122682 ~ 32124851 (+)
G797056 NA other downstream 206634 34555931 ~ 34556622 (+)
G797932 pphln other downstream 1015691 35364988 ~ 35372148 (+)
G799053 NA other downstream 1963832 36313129 ~ 36316805 (+)
G799578 LOC106571900 other downstream 2685121 37034418 ~ 37035918 (+)
G799858 LOC106571908 other downstream 3217948 37567245 ~ 37570411 (+)

Expression


Co-expression Network