LOC118966029


Basic Information

Item Value
gene id LOC118966029
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 34385884 ~ 34392962 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053228.1
AGCAGCTATCAGTAAGGAAAgcagctattggctgtcctagaagtcgctaaattacGTCATCACCTCATTTGCATAAATGGCcttgtgcatgtaattgtgatggaagctgtaggagagaggaacaACGTCGTGGGGGAGACAAAAAggcgggatcagctaGGGTCGGCTTCCTGCAtgcgcgattcatttgcagtctcgGCGGGGTGAAcctctcctgctctgactgcagctgggaggtTCTGCTGTGTGAGGACTGGGCCGCCTGTGAGTGCTTTGAGACGGGGGTGGGGCCCACGGCAGcgctcgttgagaagacaggtcagccaccagaggGAGACTCGTtgaggcctggtgacagacggattacacatcacgaggcgatggctttatctgctggacgtgccaggtctcgacAGGCTTTCCTGCCAGGACTAATTGTGGCTgattggtgagtaatcaagggctgattgctcaccagctgtacaAGTCCCAgaaagctgccagaagggcagcacacagggGAGAGACTGGGGTGTGAAAGGACTCCAGTATAGTTGGGGACGGTACCGGAGGAAGTTCAGTTTTTGATTCCCACAGGATACAGCAAGATccggagcccagaagacggtatcccggAGAGGGTCTCTTGGGGGAGACCTTTTCTTTTGGACTTTTATTTTAATAACAACCTTTTGAAACTGAGCTAATCctactctgtccgtgtctgatctgtgtaaacgttTTGACCCAACCCCTTGGTCTGCCACAATATGTGATATTGTTTACATGTAATGCTTGACAGGCTAAATGTTCCAGAAAATAACCAACAAGATCAAATCAATTTTTAATATTAAATCTTCAACTTCACATGTTCAAAAGGCATATTTTTTTTTTGCGGAACTACCTATCGAACACTTAACTCACTTCACTTCCCTCTGAATTTGCCATTCAGTTTCAGTAGGAGCAaattttctaacttaattgagtcTATCCTGGCTCGCTTTGCAGTGAAGAGTAGTCCAGCACAGCTAAGAAGACGCTCGAAGGCAGGCCTGTGTTGAGTTTGAGGGACAACTTCTTTATGTACGGAAAACCATTTTGTCCGATGGACTAGCAAGATATCCATCCAGCTCCCCTGTATCATCTGACCCTTTGGTTGTCAGTGATGAGAAGAAATCCTCTTCATCCGATGAATGCTGCCTTAGATGCTCAGTCTCGTCCCGTGTAACTGTGTCAAAAGGATTCTTCAGGTAAGCCAAACTTGTACCTTGGAAACAACACAACATTCACATGTCCAGTGCTTCAGAAAACTGTTGTGTGGCTGGC

Function

NR:

description
uncharacterized protein LOC108183756

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053228.1 True 1326 mRNA 0.48 3 34385884 34392962

Neighbor

gene id symbol gene type direction distance location
LOC110531955 143b2 coding upstream 36587 34344355 ~ 34349297 (+)
LOC110531954 LOC106566658 coding upstream 87619 34281341 ~ 34298265 (+)
LOC110531951 LOC106571855 coding upstream 257013 34058069 ~ 34128871 (+)
rl32 rl32 coding upstream 328314 34052296 ~ 34057570 (+)
LOC110531947 LOC106571849 coding upstream 460100 33863184 ~ 33925784 (+)
LOC110531960 NA coding downstream 217328 34610290 ~ 34612491 (+)
LOC110531961 LOC106571864 coding downstream 249957 34642919 ~ 34682784 (+)
LOC110531155 LOC106571865 coding downstream 553178 34946140 ~ 35104382 (+)
LOC110531964 LOC106571867 coding downstream 822909 35215871 ~ 35360678 (+)
LOC110531967 NA coding downstream 1006717 35399679 ~ 35403549 (+)
G796629 LOC106571860 non-coding upstream 18830 34366007 ~ 34367054 (+)
G796623 NA non-coding upstream 25793 34359899 ~ 34360091 (+)
G796617 NA non-coding upstream 42952 34342706 ~ 34342932 (+)
G796604 NA non-coding upstream 59477 34326104 ~ 34326407 (+)
G796601 NA non-coding upstream 62833 34322588 ~ 34323051 (+)
G796636 NA non-coding downstream 2538 34395500 ~ 34395818 (+)
G796638 NA non-coding downstream 5033 34397995 ~ 34398216 (+)
G796622 NA non-coding downstream 31014 34423976 ~ 34426889 (+)
G796626 NA non-coding downstream 35552 34428514 ~ 34432568 (+)
G797034 NA non-coding downstream 145171 34538133 ~ 34538560 (+)
G796495 LOC106613263 other upstream 264144 34121422 ~ 34121740 (+)
G794886 LOC106577459 other upstream 1798496 32583606 ~ 32587388 (+)
G794893 NA other upstream 1883135 32502396 ~ 32502749 (+)
G794892 NA other upstream 1883529 32501847 ~ 32502355 (+)
zgc:112271 bola2 other upstream 2261033 32122682 ~ 32124851 (+)
G797056 NA other downstream 162969 34555931 ~ 34556622 (+)
G797932 pphln other downstream 972026 35364988 ~ 35372148 (+)
G799053 NA other downstream 1920167 36313129 ~ 36316805 (+)
G799578 LOC106571900 other downstream 2641456 37034418 ~ 37035918 (+)
G799858 LOC106571908 other downstream 3174283 37567245 ~ 37570411 (+)

Expression


Co-expression Network