LOC110531958 (LOC106571859)


Basic Information

Item Value
gene id LOC110531958
gene name LOC106571859
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 34429068 ~ 34531428 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987843.1
CTCCATCATCAGCTATACCCTACAGCCTGTCTCACTCTCCTTATCCTCCTCCTGAAAAGAGAGAGATCACGCAACACGCCAGGGAAAAGACGACAAGAAGTGTAGGAGAGAAAAAAATCTGCAGAGGCAAagactctcctctctacactgcTCTTTTTCTGAGcgtgagagggaagggaagagggagagacaggaaggcaGTGAGCCGCAGAAATAAAAAAGGTGCTTCTTGTCATTCGTGCTGCTTTCCCTGCTGTGGCTCCAACCCACAGAGCTCTGGTTGTCAGCCAGCAAAGAGCAGAGCGCTAGCGcagtagcagtgtctctctctccacagaaaGCAGCCTGAGGAAGAGAGGATGCTAAACAACTTGACAGACAccgaggagggagaggggggacccAACTGCCAGGGTGATGGGAACCCCAAGGAGAGCAGTCCCTTCATCAACAGCAGCAGTGCCAGCGACGTGGAGAAGAGCCAGCAGTACAATGGCAAGAATATGGCCCTGTTTGAGGAGGAGATGGACAACAGTCCCATGGTGTCGTCCATACTCAGCAGTCTGGCCAACTACTCCAACCTGCCTCAGGGCAGCAAAGAGCACGAGGAGGCCGAGAACGAGGAGGGGGCGGCTCCGTCCAAAAAAAAACCTGCTGTCAAGGCACCATCGCTGGGCACTCTGATGGGGGTGTACCTGCCCTGCATCCAGAATATCTTTGGTGTGATCCTGTTCCTGCGGATGACCTGGATGGTGGGCATAGGAGGGGTCTTTGGCTCCTTCATCATCGTCTTCATGTGCTGCTCCACGACCATGCTGACAGCTATCTCCATGAGTGCCATCGCAACAAATGGAGTGGTGCCAGCCGGAGGCTCCTACTACATGATCTCCCGTTCCCTTGGCCCTGAGTTTGGCGGAGCTGTCGGAATTTGCTTCTACCTAGGAACTACTTTTGCAGGTGCAATGTACATCCTTGGTGCCATCGAACTTCTGCTGATCTACATCCTCCCCCAGGCAGCCATTTTTAAGATGGAGGGTCTGGAGGGTGCTGATATGGAGGCAGCGATGCTGAACAACATGCGTGTATACGGCACCATTGTGCTCAGTTTCATGGCCACGGTGGTGTTTGTGGGGGTCAAATATGTCAACAAGCTGGCTCTGGTCTTCCTGGCCTGCGTCATTCTGTCCATCCTGGCTGTCTATGCTGGGGTCATCAAGACGGCCTTTGAACCCCCTGTTTTCCCCGTGTGTATCCTGGGGAACCGTACTCTGATCTCCAAGGGATTTGACGTTTGTGCCAAGGTCATTGAGCGGGACAACGGCACAGTCACCACCAAACTGTGGAAGATTTTCTGTGACTCCGAGTTCCTCAATGCTACCTGTGACGAATACTTTGCAAACAACAATGTCTCTGAGATCCAGGGTATCCCAGGGGTCAGCAGTGGTATACTGGCTGaGAATCTGTTTGGTTACTATCTGGAGAAGGGAGACTTCTTGGAGAAGCGGGGGATCTCTGCCATGCAGGACCCTGAAGCTGTCATCACCAACTCCAACCGTTACGTCCTGGCTGACATCACCAGCTTCTTCACCCTACTGGTGGGGATCTACTTCCCCTCCGTCACAGGCATCATGGCTGGCTCTAACCGCTCTGGAGACCTGCGTGATGCCCAGAAGTCCATCCCCATAGGCACCATAGCAGCCATCACCACGACTTCTATAGTGTACATGTCTGCAGTGGTCCTGTTTGGGGCCTGTATTGAAGGGGTGGTCCTGAGGGACAAGTTTGGTGAGGGGGTGGACGGTAACCTTGTGATTGGTACGTTGGCTTGGCCGTCACCATGGGTCATCGTGATTGGATCCTTCTTCTCCACCTGTGGGGCTGGGCTTCAGAGTTTGACTGGAGCGCCACGCCTCCTGCAGGCCATTTCTCGCGATAGCGTCATCCCTTTTCTTaaaGTGTTTGGGCATGGCAAGGCCAACGGAGAGCCTACCTGGGCCCTGCTTCTCACAGCTAGTATCTGTGAGATCGGCATCATCATCGCATCTCTGGACGCTGTTGCCCCCATCCTCTCCATGTTCTTCTTGATGTGCTACATGTTTGTCAACCTGGCCTGTGCCCTGCAGACTCTGCTGAGAACCCCCAACTGGAGGCCGCGCTTCAAGTTCTACCACTGGGCTCTCTCCTTCCTGGGCATGAGCTTGTGTCTGTCACTCATGTTCATCTGTTCCTGGTACTACGCCATTGTTGCCATGGTGATCGCTACCTGCATCTACAAATACATTGAGTTCGCTGGGGCGGAGAAGGAATGGGGAGATGGTATACGTGGCATCTCGCTCAGCGCTGCTCGCTTTGCCCTCATGAGGCTGGAGGAGGGACCGCCTCACACCAAGAACTGGAGGCCTCAGATCATGGTCCTGGTGAGCGTGGATGCAGAACATAATGTAGAGCAGCCCCGTCTGCTGTCCCTGACCAATCAGCTGAAAGCAGGAAAAGGCCTGACCATTGTGGGCACCTCGGTGGTGGGCACATACCTGAACAACCATGCAGAGGCCCAGCAGGCAGACCAGTCTCTGAGGAAGTTGATGGAGACAGAGAAGGTGAAGGGCTTCTCCCAGGTGGTGATCTCCTCCAACCTGAGGGATGGAACCTCCCACCTGATCCAGGTCGGGGGGCTGGGAGGCCTGAAGCACAACACTGTGCTGGTCAGCTGGCCACGCACCTGGAAACAAGCTGAGGACAACCTGCGCTTCAGAAACTTCATTGAGGTGGTTAGGGAGACGACTGCAGCCAGCATGGCCCTGCTGGTCCCTAAGAACATTGCTGCCTACCCGTCCAATGGAGAGCGCTTCACTGAAGGCCATATTGATGTGTGGTGGATTGTCCATGATGGAGGCATGCTGATGCTGTTGCCCTTCCTTCTGCGCCAGCACAAGGTGTGGAGGAAGTGTAAGATGCGCATCTTCACCGTGGCCCAGATGGATGACAACAGCATCCAAATGAAGAAAGACCTGATCACCTTCCTGTATCACCTGCGTATCGATGCCGAGGTCGAGGTGGTGGAAATGCATGACAGTGACATCTCAGCCTATACATATGAGAAGACTTTAGTGATGGAGCAGCGCTCCCAGATCCTCAAACAGATGCACCTCACCAAaaacgagatggagagagagATCCAGAGCATCACTGATTCATCCCGTGGTTCTATCCGTCGTAAGAACCCGTCTAACCTGCGGTCTCAGCAGAGCAGTGGGGAGCCGGCTGGAGTCAGCGTGGAAGAGAAACCGGAGGAGGAGGTGCAGCTGATCCACAATAAGAACGCAACCCCCACCAGCCCAACGTCCCCCATCACGCCTGCAGGGGGAGTTGCCACCCCCGGGTCGGAGGTGCAGATGACCTGGACAGACAAGGCTGAGCACCAGGCCGCAGCAGCCCACCCAGAGCAGGGCGGGGTCAAAGACATCTTCAACATGAAGCCGGAGTGGGAGAGCCTGAACCAGTCCAACGTGAGGCGCATGCACACAGCTCTGAGGCTCAACGAGGTCATCATGAAGAAGTCCAAGGATGCCAAACTGGTTCTGCTGAACATGCCCGGACCACCCAAGAACCACATGGGAGAGGAAAATTATATGGAGTTCCTCGAGGTCCTCACCGAGGGTCTCAACCGGGTCCTCCTAGTACGTGGGGGTGGACGTGAGGTCATCACCATCTACTCCTGAGAAAACAACCTCAAATCAAAACATCAACCCCCCCACCACCCACTCACCTAGCATCTTAATGGTTTATGGCCCCTGCTTCTATTCCCCCTACACTTTTACATTTTTCCATTCCCCCTACACATCCCTCACATCCCACTAACCcctccccagacacacacacacacacactcataacatATCAGCTCACTTTGCACCACGTagttagtaccccccccccccgagcccCCTAAAGGCACTGGCTGAATTCTCTTTTACTATCAGTCACTCCTCCCATCATCTAGAAAGCTGTGGCATCAACCTGTTATTTTATGGCTATCAGATCACTAGATGCCAAATGGCACATGAGTTTCTCCTTATACTGAGGAGTGGACATATCCCAAAGACAAATTATTCCCCAAACTAAAAGTAATTTCTGTTTGGCAGCGCCAATGTCTTTTTTCtgtttgtccttgtgtttttttCTACCTGTCTGTCAATATTGTtgcttttcttcttctttttgtagGGATGTGGGTTACTTGCAAGAGAGGGATTGATATCTTCTCATTGCTGGTCTATTTTATTTCTTACTTTTATTTATTAATCTGTTCCAGTGTTTAGAGGATACACTTCATATCTTTTtctctttttgttgttgtgcgtTAGTTGTTTTAATGTAATGTACGATATGATGTGTTGAGGGAAGGGGATGGGTTGAGAATTCATCAATCATCATCAGCATGTCTTCCTATCGATTTTCACCTTGGGGACAAGGTCAGTTGACGAATCCTGGGCAGCAGCACAGTCTATATCAatttgaaggaaggaaggataacTGCATGCATAGGCACAGCACACAGTGACGTGTGGAGGAGACAGGCAAACTGCTACTAGGATGCTGTTGTCAGGATTGAGGTCAACTTCATACCAGTCAGTTCACAGATGGGAGTTGAAATGTAATCAATGAATTGAATGGATTACATTTCTCATTGAACTCACTGAATTCTGATGGTTGGTGTTGATTACTGTAAATAGTGTGCTTTGTCCTATCATTTAATACATACTATTACCAGCTGCACCTGATGCTCCTCCTGATCAGTGACTAGTGCTGACAAGACTTTTAGGTGGCATAAACTATTGTTATTACAGTTATACAACTGTAAGGAGAAACCCTGAAATGTATTGATATAAAGTAGATATGGATGTCAAGAAACTACTGTGTTATAATCTAAAACAAAAGTCCATGTGTTTGAAACTATATTATCAAACGGCAACAATTTTAATATATTACCATGTAGTCTACATTAGAACATGTAAATTGCTAATTTAGAGACACTCATAAACATATAATGTTTGTGATACACTGATATATTTTAGTAAATACCTCTGTTTTACTTTGTCATCATTTGGTTTACACTAATTCCAGTCTAGAAATGTGAATTCTACAATTCTTGCCAAATACAAATATACAAATTGTGCCATAGGACAATAAATAACTTTTTGATACAAACCTATTTTTAGTACAAAGGCAAAACTGTGTAGTGAATGAACAAACTATGCTTTAGATGGAAATTAGCAGTGAAATTACAACTGGTTTGAATGGATATTTTTGAAGCCAGCGCAAATATTCACAACCTTGGACTAGAATGGGAAGAAACGATTTATTGTCAGTGTGGCACAGCTATTTATTTGCGAAATATAATATGACTGTGAATCCCTATGTTCTGCATATTTACAAGGGTATGTCTAAAGAATCTACCCTGGAATAATACATGAATCATATTCATTATTTTTGTAAGCAAATATTATACAGATATATGTACATACAGGTCGACCTCATATTTGCAAGTATTTAACATGTTAGTTTCTGTGCACTGGATGGCACTGTTGAACACGTGATAGAAATATAGGGTATATGATATACATTTGTATGATATTGTTTTCGGAAGAAAATGATTTAATTCAATTTACTGAATAGTTTAcgtaaaaacaatatattttgtgTGTGATGAACACTGTATTCTGTGAAGGATATTCTTAATCTAACATATTAGGACATATTATAGATGTTCTAAAAACAATTAAAGCTGCTATTCTGATTCATGTGTAAATATTGAACCAAAAATAAAAATTTAAGAAGTCTATTAATCAGATTGGGTACTAGGAAGGGTATACAGGGTTTGAGTTACTTGGGTAGCAAGGCAGGGATGTTTGACACTAGTCAGTGGTTTTCAACACTGTCCTTGAGGTTCAACAGTCAGCTACAGTTTGCTCCAACAAATCACATAGTTCATGAAGTTATTGACCTGGACATGACGCTGTTTTCTTTGTGAAAAGATCTGAAAAAAAATCATAGCTGACATTAGTCAATCAACATCTCCACTGAGCATTGTTTAGTTGGAGAAAATGTAGCCACAAAACAACATTTTGAACTTGTTATTGAAAGGCAGGTCTAAGGGCAGatgaaaatatatacatacaatCCTTCATGGAGTTTATTTGAGATATTATTAAATATTCGGTTGTTAcccaaatatattttaaaatatgcTGAAATCAGTAAGAGGACAGACCTACTTAGGTGTTTGACTGGTCCCATAGATACCAGTAAGACACTCCGTGTTTGTTGACAGCTCTAAGCTGAGTGAGAGGTGATGAGGTTTGGGGTTAGATAGTGGTAGATAGTTATCCTCAGTCAGCACACTTTTTACGTGGCACACAAATACTACAGAAAAACAAAATAATATAATCTTGGAAATATTTAACTATACAATCTATAATAGTAttgaagtaaaataaaaaatactataACATATATACAGTAACTGGACATATGAATATGATATGACTTGTTTAAAAGTTGATGGTTGaaaacaatgtatttttttatattcCTGTTGGCAtggtgtttgtaacagtagttgcATATATCCTTTTAGACAGGAGTTGGTTAGTTGTCATTGAGGACAAGACACGTAGCTCACAGTTGTGTCACTTTTCTTCTCACTTTTTTGTTGATAAATTAATGGGTGAAGAAAATTGTCCAAAGTTTATCTTTTGAGTTCAAAATAGGTAGTTGATATGTCTCAGATATCCCAGACCTAGGGCAAGAGCTGGAACATTGTTTACATTGTGGGAGGCAACCTGTTTGCCTAGGGAAACTAGTAATTGAGTCAATATGTTCGGCCTCAGTCATCATTTAACTACAGAAAACATGAAAAGATATGGAGATTTGGAGCTGTGGATTATGATTTGAGTGTTAAAACTCTGGTATATATGCAATACAAACCTACTGTAAACCTAAAACATActgctgttcaaaagtttggggtcactaagaaatgtctttgtttttgaaagaaattcacatttttttgtccattaaaataacataaaattgatctaaatacagtgtagacattgttaatgttgtaaa

Function

NR:

description
solute carrier family 12 member 5-like

GO: NA

KEGG:

id description
K23967 SLC12A5, KCC2; solute carrier family 12 (potassium/chloride transporter), member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987843.1 True 7134 mRNA 0.45 26 34429068 34531428

Neighbor

gene id symbol gene type direction distance location
LOC110531957 LOC106571860 coding downstream 43195 34362170 ~ 34385873 (-)
LOC110531153 LOC106571861 coding downstream 67305 34359904 ~ 34361763 (-)
LOC110531953 LOC106571856 coding downstream 265892 34133570 ~ 34163176 (-)
LOC110531949 LOC106571850 coding downstream 394578 34006952 ~ 34034490 (-)
LOC110531948 LOC106571850 coding downstream 430060 33940435 ~ 33999008 (-)
LOC118966030 NA coding upstream 65112 34596540 ~ 34607133 (-)
eif2d eif2d coding upstream 86072 34617500 ~ 34636294 (-)
LOC110533011 LOC106571887 coding upstream 184312 34715740 ~ 34721316 (-)
LOC110531962 LOC106571888 coding upstream 197906 34729334 ~ 34802834 (-)
LOC110531965 pphln coding upstream 832624 35364052 ~ 35372459 (-)
G796855 NA non-coding downstream 2183 34423962 ~ 34426885 (-)
G796951 NA non-coding downstream 19488 34409236 ~ 34409580 (-)
G796950 NA non-coding downstream 20085 34408782 ~ 34408983 (-)
G796948 NA non-coding downstream 21687 34407040 ~ 34407381 (-)
G796940 NA non-coding downstream 32945 34395667 ~ 34396123 (-)
G797042 NA non-coding upstream 12653 34544081 ~ 34544586 (-)
G797070 NA non-coding upstream 34333 34565761 ~ 34570056 (-)
G797071 NA non-coding upstream 38727 34570155 ~ 34570811 (-)
G797075 NA non-coding upstream 41085 34572513 ~ 34572849 (-)
G797081 NA non-coding upstream 45161 34576589 ~ 34577263 (-)
G796733 rl32 other downstream 371519 34051059 ~ 34057549 (-)
G794311 LOC106577443 other downstream 2400800 32026071 ~ 32028445 (-)
G793842 NA other downstream 2766870 31661239 ~ 31662198 (-)
G793489 NA other downstream 3010095 31418455 ~ 31418973 (-)
G793472 NA other downstream 3025199 31403482 ~ 31403869 (-)
G797605 NA other upstream 338527 34869955 ~ 34875879 (-)
G798195 NA other upstream 822791 35354219 ~ 35354675 (-)
LOC110531966 LOC106571884 other upstream 854425 35381661 ~ 35400349 (-)
LOC118966032 LOC106571870 other upstream 960598 35492026 ~ 35521884 (-)
LOC110531979 brpf1 other upstream 1445994 35948544 ~ 35979307 (-)

Expression


Co-expression Network