LOC110533011 (LOC106571887)


Basic Information

Item Value
gene id LOC110533011
gene name LOC106571887
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 34715740 ~ 34721316 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021617143.2
GAAAGCTAGACCAATAATTTGTCTCAGGTCATGACCCACCAGTGGTTATTGGAAAACACCAAGCTGAGATACGGGGCATAGTTTCCTTTGGACCATATGAGAAAGagcagaaggagggaggtctTAAAATAGTTTCTGAGTTACAGCTAAGGCAGGCAGTCACACTGTGACCTGTAGACCTTTCGGAGGGGAGTAAAACCACAACACTCCATGCCGGGAGAACCTCGGCTCCATCCATGTCAGCTTCTCTTTGGTGCATGCCTTACTAGAGGGATTGATCAGGACTAGAAGAGGAGAGACTCATCATCTATCTGCGCCAATGCTCCTGACAGAGGAGTCTGGTCTTTTCTATTTTCATAGTTGAGCCAGATGACCCTTCACGTGTCAGCCCACATTCAGTGCAAAACCAAGGTAAGAGATGCAgtgtgtctgtgtgtgatagtGTTCCTGAGTCTCTCCTTGACCATGGGAGACCCTGGTCCGTGCAGACACTCCATCACCAGAGATCACCTGCTGATCATAAGACGCCTGATAGATAACCAGTTGCAGAGTGGATGCTCAATAACCTACACATTCATTGAGCGGAGAAGTTTGAGTAAATGTTGTTATGTGAAAGCTGCCCTGCCCTGGATCTTGGAGCTCCTGACCAGCCACTTTAGATACACCCAAGGCTCAGACAACCACAGCTACGTAATGTCTCTGACCTGTCTCATCCACAACATCTACTCTCAGAGATGTGTACCACAGATCAACGAGGAGCTAGAGgatgacCCAGTGAGCTTTGGGATGTCATTCAGCAGCTCCCCATCAGAGGCCCTGGGGCGGGTCCAGGATGTCCTGTCTGAGTACTGGGAGCTGGTGACCACCAGTGACTCCCCGGTAGACTGGAGCTGTGAGAGGGAGTACAGAGACACAGTCCTCCCTATAGCTTTCTCTCTGACTACAGTCAGCAGTTTTTGGGACTCAGAGAAAGCCCCTCAGACTGGTCTAGATGGAGCCCAAGTTGGAGACCTTAAGTTTGATTTCATGGTCATAACGCCATCAGTCTGTGGAGGAATGATGTTCATATTCACTCTCTATTGCCTCGTCAAACACAAGATGTTCCACAGTACTTATCATCACACATCACAAGTGTACCAAAACTCAAGTTTGCATACAGATATTCAGGACATTGAGATGCAGGTGCAATAA

Function

NR:

description
uncharacterized protein LOC110533011

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0005125 cytokine activity molecular_function
GO:0008083 growth factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021617143.2 True 1191 mRNA 0.48 8 34715740 34721316

Neighbor

gene id symbol gene type direction distance location
eif2d eif2d coding downstream 79446 34617500 ~ 34636294 (-)
LOC118966030 NA coding downstream 108607 34596540 ~ 34607133 (-)
LOC110531958 LOC106571859 coding downstream 184312 34429068 ~ 34531428 (-)
LOC110531957 LOC106571860 coding downstream 329867 34362170 ~ 34385873 (-)
LOC110531153 LOC106571861 coding downstream 353977 34359904 ~ 34361763 (-)
LOC110531962 LOC106571888 coding upstream 8018 34729334 ~ 34802834 (-)
LOC110531965 pphln coding upstream 642736 35364052 ~ 35372459 (-)
LOC110531966 LOC106571884 coding upstream 660345 35381661 ~ 35400349 (-)
LOC118966032 LOC106571870 coding upstream 773748 35492026 ~ 35521884 (-)
LOC110531156 wdr46 coding upstream 835551 35556867 ~ 35562538 (-)
G797480 LOC106571864 non-coding downstream 39596 34666508 ~ 34676144 (-)
G797444 NA non-coding downstream 90641 34624645 ~ 34625099 (-)
G797443 NA non-coding downstream 103226 34612174 ~ 34612514 (-)
G797439 NA non-coding downstream 106174 34609361 ~ 34609566 (-)
G797122 NA non-coding downstream 111282 34599131 ~ 34604458 (-)
G797607 NA non-coding upstream 160674 34881990 ~ 34885845 (-)
G797608 NA non-coding upstream 181117 34902433 ~ 34939456 (-)
G797611 NA non-coding upstream 184171 34905487 ~ 34907574 (-)
G797612 NA non-coding upstream 192584 34913900 ~ 34918197 (-)
G797609 NA non-coding upstream 193475 34914791 ~ 34937813 (-)
G796733 rl32 other downstream 658191 34051059 ~ 34057549 (-)
G794311 LOC106577443 other downstream 2687472 32026071 ~ 32028445 (-)
G793842 NA other downstream 3053542 31661239 ~ 31662198 (-)
G793489 NA other downstream 3296767 31418455 ~ 31418973 (-)
G793472 NA other downstream 3311871 31403482 ~ 31403869 (-)
G797605 NA other upstream 148639 34869955 ~ 34875879 (-)
G798195 NA other upstream 632903 35354219 ~ 35354675 (-)
LOC110531979 brpf1 other upstream 1256106 35948544 ~ 35979307 (-)

Expression


Co-expression Network