LOC110531962 (LOC106571888)


Basic Information

Item Value
gene id LOC110531962
gene name LOC106571888
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 34729334 ~ 34802834 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615508.2
aggaagaagagggagaagagggttgTTTTTGGTGGACACTTCTAGGGAAACTCCGAGCCAGTGGCCTTTGGGTCAGAACTCATtgaaggagtgaaggagagatggTATAAAAAGAGTagacagacagtgagaaagagagagaggggccaatCTTTCAGACGATTGGATATACAACCAGCTGGTGTGCCCGGAGGAACGATACTAGGATAACTTGACTAGGATAACTTGTGCGTCTTCTCAGGGCCCGTACACTCCTTCGCTCTTCAGAGTCTCCATGGCCATGCTGATGCATTGCTGGGTGTGTGTGATTGCTCTGTCACTGACGATGACCACAATCAATGCCTTACAAAGGATCAGTCTGAAGAAGATGCCCTCCATAAGAGAGACTCTGCATGAGATAGGCGTGTCCCCTGCCCAGTTCTTTGCTGAATTGGCCCAGAAAAGCAAAGATGACCCCTCCACCAGCAACGgcaccacccccacccccctcaccaACTACCTGGATgCCCAGTATTATGGGGAGATCAGTATTGGTTCTCCTGCTCAGATGTTCAATGTGGTGTTTGATACAGGCTCAGCCAACCTGTGGGTGCCCTCTTACAACTGTTCCCCTCTCTATACTGCCTGctTTACCCACAACAGATATGATGCCTCCAAATCCCGAACACACATAGAGAACGGGACAGGTTTCTCCATCCAGTATGCCTCTGGAAACGTCAGAGGGTTCCTGAGTGAGGATGTGGTTGTGGTGGGTGGCATCCCAGTGGTCCAAGTATTTGCTGAGGTTACAGCCCTGCCTGCCATCCCCTTCATCTTTGCCAAGTTTGATGGGGTCCTGGGGATGGGCTACCCCATCGTGGCCATCGACGGCATCACCCCCGTGTTCGACCGCATTATGTCCCAGCACGTCCTCAAGGAGGACGTCTTCTCTGTCTATTACAGCAAAGACCCAATGCACAAACCAGGTGGAGAGCTAGTGCTGGGAGGGACAGACCCAGACTACTACACTGGTACCTTCAACTACATGGGCACCCGTGAGGCAGGAAAATGGGAGGTCAACATGAAAGGGGTGTCTGTGGGGGAGGAGATGCTGTTCTGTAAGGAGGGCTGCATGGCTGTGATTGACACAGGCTCCTCCTACATTACAGGCCCTGCCTCTTCTGTGGCTGTACTGATGAAGACCATTGGAGCCACAGAGCTGGCAGAGGGAGGGTACACTGTGAACTGTGACCTGGTAAAGTCCTTACCCAGTGTCACCTTCCACCTGGGAGGCCATGAGTACTCACTCACTGAAGGAGACTACATCTTATGGCAATCTCAGTTTGGAGAGGACATATGTAGCGTGACTTTTAGGGGTTTGGATGTGCCGCCCCCTACTGGCCCTATCTGGATCCTGGGAGCCAACTTCATCGCCCGCTACTACACAGAGTTTGACCGTCGCAACAACCGCATAGGCTTCGCCACAGCAGTCTGACAGGATTCGTAGCCACCAAGctttcactctctcttgctcttacTCTTTTTTTTACTCGCTTTGTCTTTGTTACTGTCTTTTTCTATCAGCCTCTATTTCTCCCTTACACTCTAACTATATCATTcagtttttctttctctctttttctgtgaCTCTTTGTCACAGAGCCTGCCCTCTTGTCCATATATTTTTTACAGTTCTTGCATTCTGCCATGTCAAGTAATAATTTTGATTTCAATCTGTGTTTTGCACTCTTCTACATAATTGTTTTTAGTTGACGATAATTGACGTGCTGATACCAACACTGGacttatgttgtgttatatactgtatcacatgGCATGCTGACTTCACACAGTATCACATTGCAGCACAAATCCTCACTTAATAACACCATGTCCGACCTCATATCTGCATTGTCATGACGTAACACGAATAAAGCTTGTTTaatgggaaa
>XM_036987861.1
CAGCATACACAACGTCGCTACATACTGATGCATAATTCAAACTAGTGTATAATATCTATCTGTGGATATTTCAAAGAGTTTCGTCAAGAAAGTGTGCAACATACTTTGCACTGAAAACAATGATTTTCTATTAGATTGTGGATTTGGGGGATTGTTGCGAGACACATAACAAGATCAGTCTGAAGAAGATGCCCTCCATAAGAGAGACTCTGCATGAGATAGGCGTGTCCCCTGCCCAGTTCTTTGCTGAATTGGCCCAGAAAAGCAAAGATGACCCCTCCACCAGCAACGgcaccacccccacccccctcaccaACTACCTGGATgCCCAGTATTATGGGGAGATCAGTATTGGTTCTCCTGCTCAGATGTTCAATGTGGTGTTTGATACAGGCTCAGCCAACCTGTGGGTGCCCTCTTACAACTGTTCCCCTCTCTATACTGCCTGctTTACCCACAACAGATATGATGCCTCCAAATCCCGAACACACATAGAGAACGGGACAGGTTTCTCCATCCAGTATGCCTCTGGAAACGTCAGAGGGTTCCTGAGTGAGGATGTGGTTGTGGTGGGTGGCATCCCAGTGGTCCAAGTATTTGCTGAGGTTACAGCCCTGCCTGCCATCCCCTTCATCTTTGCCAAGTTTGATGGGGTCCTGGGGATGGGCTACCCCATCGTGGCCATCGACGGCATCACCCCCGTGTTCGACCGCATTATGTCCCAGCACGTCCTCAAGGAGGACGTCTTCTCTGTCTATTACAGCAAAGACCCAATGCACAAACCAGGTGGAGAGCTAGTGCTGGGAGGGACAGACCCAGACTACTACACTGGTACCTTCAACTACATGGGCACCCGTGAGGCAGGAAAATGGGAGGTCAACATGAAAGGGGTGTCTGTGGGGGAGGAGATGCTGTTCTGTAAGGAGGGCTGCATGGCTGTGATTGACACAGGCTCCTCCTACATTACAGGCCCTGCCTCTTCTGTGGCTGTACTGATGAAGACCATTGGAGCCACAGAGCTGGCAGAGGGAGGGTACACTGTGAACTGTGACCTGGTAAAGTCCTTACCCAGTGTCACCTTCCACCTGGGAGGCCATGAGTACTCACTCACTGAAGGAGACTACATCTTATGGCAATCTCAGTTTGGAGAGGACATATGTAGCGTGACTTTTAGGGGTTTGGATGTGCCGCCCCCTACTGGCCCTATCTGGATCCTGGGAGCCAACTTCATCGCCCGCTACTACACAGAGTTTGACCGTCGCAACAACCGCATAGGCTTCGCCACAGCAGTCTGACAGGATTCGTAGCCACCAAGctttcactctctcttgctcttacTCTTTTTTTTACTCGCTTTGTCTTTGTTACTGTCTTTTTCTATCAGCCTCTATTTCTCCCTTACACTCTAACTATATCATTcagtttttctttctctctttttctgtgaCTCTTTGTCACAGAGCCTGCCCTCTTGTCCATATATTTTTTACAGTTCTTGCATTCTGCCATGTCAAGTAATAATTTTGATTTCAATCTGTGTTTTGCACTCTTCTACATAATTGTTTTTAGTTGACGATAATTGACGTGCTGATACCAACACTGGacttatgttgtgttatatactgtatcacatgGCATGCTGACTTCACACAGTATCACATTGCAGCACAAATCCTCACTTAATAACACCATGTCCGACCTCATATCTGCATTGTCATGACGTAACACGAATAAAGCTTGTTTaatgggaaa
>XM_036987860.1
GGTGCCGCTTCTCATTCGAATGCTGTAATTTTATCTAAACCGCCGATCCCAGCTAAGTAACTCATGCAAAGAGTTAAAGCGCAATTATGTGTTTTATCTCCAGTACTCTGCCATGATTGTCAGTTATGTGGCTGCTCTACTGATAATCTCAGTGCGTCCTTGCTGGGATGACACAATCAGTCTACTACCGGAGAATATCAACACCAAACACATTGGTTCACCGTTCCACGGGAGCGGACAGTACACAGCATACCATAATGTTCTGAATAATGGCCAAGTCTACCTCGCTCCTTATTCTACTGAACCGCTTAGGCGTAACAAACACAAGTCCAACATTTATCGGAAACTGTTAAactacctgttcactaccctcctgCTCTCCGGGGATGTACAACTCAATCCTGGGCCCAATATCACCGAGCCAGTGATACGCACCGGAGTGGAGAGCGGTGGATGGCCTCGTCCACTGGTCGTCGCCGCTGTGGAGGTGGGATCAGTCTGAAGAAGATGCCCTCCATAAGAGAGACTCTGCATGAGATAGGCGTGTCCCCTGCCCAGTTCTTTGCTGAATTGGCCCAGAAAAGCAAAGATGACCCCTCCACCAGCAACGgcaccacccccacccccctcaccaACTACCTGGATgCCCAGTATTATGGGGAGATCAGTATTGGTTCTCCTGCTCAGATGTTCAATGTGGTGTTTGATACAGGCTCAGCCAACCTGTGGGTGCCCTCTTACAACTGTTCCCCTCTCTATACTGCCTGctTTACCCACAACAGATATGATGCCTCCAAATCCCGAACACACATAGAGAACGGGACAGGTTTCTCCATCCAGTATGCCTCTGGAAACGTCAGAGGGTTCCTGAGTGAGGATGTGGTTGTGGTGGGTGGCATCCCAGTGGTCCAAGTATTTGCTGAGGTTACAGCCCTGCCTGCCATCCCCTTCATCTTTGCCAAGTTTGATGGGGTCCTGGGGATGGGCTACCCCATCGTGGCCATCGACGGCATCACCCCCGTGTTCGACCGCATTATGTCCCAGCACGTCCTCAAGGAGGACGTCTTCTCTGTCTATTACAGCAAAGACCCAATGCACAAACCAGGTGGAGAGCTAGTGCTGGGAGGGACAGACCCAGACTACTACACTGGTACCTTCAACTACATGGGCACCCGTGAGGCAGGAAAATGGGAGGTCAACATGAAAGGGGTGTCTGTGGGGGAGGAGATGCTGTTCTGTAAGGAGGGCTGCATGGCTGTGATTGACACAGGCTCCTCCTACATTACAGGCCCTGCCTCTTCTGTGGCTGTACTGATGAAGACCATTGGAGCCACAGAGCTGGCAGAGGGAGGGTACACTGTGAACTGTGACCTGGTAAAGTCCTTACCCAGTGTCACCTTCCACCTGGGAGGCCATGAGTACTCACTCACTGAAGGAGACTACATCTTATGGCAATCTCAGTTTGGAGAGGACATATGTAGCGTGACTTTTAGGGGTTTGGATGTGCCGCCCCCTACTGGCCCTATCTGGATCCTGGGAGCCAACTTCATCGCCCGCTACTACACAGAGTTTGACCGTCGCAACAACCGCATAGGCTTCGCCACAGCAGTCTGACAGGATTCGTAGCCACCAAGctttcactctctcttgctcttacTCTTTTTTTTACTCGCTTTGTCTTTGTTACTGTCTTTTTCTATCAGCCTCTATTTCTCCCTTACACTCTAACTATATCATTcagtttttctttctctctttttctgtgaCTCTTTGTCACAGAGCCTGCCCTCTTGTCCATATATTTTTTACAGTTCTTGCATTCTGCCATGTCAAGTAATAATTTTGATTTCAATCTGTGTTTTGCACTCTTCTACATAATTGTTTTTAGTTGACGATAATTGACGTGCTGATACCAACACTGGacttatgttgtgttatatactgtatcacatgGCATGCTGACTTCACACAGTATCACATTGCAGCACAAATCCTCACTTAATAACACCATGTCCGACCTCATATCTGCATTGTCATGACGTAACACGAATAAAGCTTGTTTaatgggaaa

Function

NR:

description
renin-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004190 aspartic-type endopeptidase activity molecular_function

KEGG:

id description
K01380 REN; renin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615508.2 False 1931 mRNA 0.49 9 34729334 34737284
XM_036987861.1 False 1752 mRNA 0.48 9 34729334 34795831
XM_036987860.1 True 2071 mRNA 0.49 9 34729334 34802834

Neighbor

gene id symbol gene type direction distance location
LOC110533011 LOC106571887 coding downstream 8018 34715740 ~ 34721316 (-)
eif2d eif2d coding downstream 93040 34617500 ~ 34636294 (-)
LOC118966030 NA coding downstream 122201 34596540 ~ 34607133 (-)
LOC110531958 LOC106571859 coding downstream 197906 34429068 ~ 34531428 (-)
LOC110531957 LOC106571860 coding downstream 343461 34362170 ~ 34385873 (-)
LOC110531965 pphln coding upstream 561218 35364052 ~ 35372459 (-)
LOC110531966 LOC106571884 coding upstream 578827 35381661 ~ 35400349 (-)
LOC118966032 LOC106571870 coding upstream 692230 35492026 ~ 35521884 (-)
LOC110531156 wdr46 coding upstream 754033 35556867 ~ 35562538 (-)
LOC118936388 LOC106571889 coding upstream 761427 35564261 ~ 35566271 (-)
G797480 LOC106571864 non-coding downstream 53190 34666508 ~ 34676144 (-)
G797444 NA non-coding downstream 104235 34624645 ~ 34625099 (-)
G797443 NA non-coding downstream 116820 34612174 ~ 34612514 (-)
G797439 NA non-coding downstream 119768 34609361 ~ 34609566 (-)
G797122 NA non-coding downstream 124876 34599131 ~ 34604458 (-)
G797607 NA non-coding upstream 79156 34881990 ~ 34885845 (-)
G797608 NA non-coding upstream 99599 34902433 ~ 34939456 (-)
G797611 NA non-coding upstream 102653 34905487 ~ 34907574 (-)
G797612 NA non-coding upstream 111066 34913900 ~ 34918197 (-)
G797609 NA non-coding upstream 111957 34914791 ~ 34937813 (-)
G796733 rl32 other downstream 671785 34051059 ~ 34057549 (-)
G794311 LOC106577443 other downstream 2701066 32026071 ~ 32028445 (-)
G793842 NA other downstream 3067136 31661239 ~ 31662198 (-)
G793489 NA other downstream 3310361 31418455 ~ 31418973 (-)
G793472 NA other downstream 3325465 31403482 ~ 31403869 (-)
G797605 NA other upstream 67121 34869955 ~ 34875879 (-)
G798195 NA other upstream 551385 35354219 ~ 35354675 (-)
LOC110531979 brpf1 other upstream 1174588 35948544 ~ 35979307 (-)

Expression


Co-expression Network