LOC110531155 (LOC106571865)


Basic Information

Item Value
gene id LOC110531155
gene name LOC106571865
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 34946140 ~ 35104382 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986939.1
ACTGGCTTCGGCTCTCCACATCCAGGTACGACACGCCCCCCTCGAGACGGTGAGGTCCCTGGGGTTGATTACAACTTTATGTCCATAGAGGACTTCCTAAATCTTGAGCAGTGTGGAACACTACTGGAAATAGGAACGTATGAAGGTAACTATTATGGGACCCCCAAGCCGCCGAGGCAGCCCGTGGTTGGGACAGTGATTTTCAGTAATGCTGTGCTCCTCAACGGCCCCCCAGGCTCCCAGCAGTCAACTCCCAAGCACACCAAGTCCTACAATGACATGCAAAACACCCGAGTAGTGCCTGCTGACTACGAGGATGACGACCAGACCACGGAAATGAACAACAGTTTTACAGGTAACTCTAGCGACCAGGACGAGAGCCGCGGCGGTGTTCTTCGGCCATATCCCGCGCGCGAGAATGCTCCGTCCTATGGTCTGAACAACGTGGCCGCCTCCACCTCGGACAACGGGCAGCAGACGCATGCCCAACCCCAGGCCTCTCCTGAAGACCCCCTGGGACCCCTGCCAGACAACTGGGAGATGGCCTACACAGAGAATGGAGAAGTCTACTTTATAGACCACAACACAAAGACCACATCGTGGATCGACCCCCGGTGTCTTGAGAAACCTCTGAAACCTCTGGAAGAGTGTGAGGATGATGAAGGGGTACATACTGAGGAACCAGACAATGAACTAGAGCTGCCTGCAGGATGGGAGAAGATAGATGACCCAGTGTATGGGGTGTACTACGTAGAtcACATCAACAGGAAGACCCAGTATGAGAACCCCATAGTGGAGGCTAGGCGCAGGATGcagctggagcagcagcagccgcaGCCTCCTGAAGagtGGATAGAGGAGCACTCCTCAGCTGGTGCTCCCCTGGCCAACTATGCCAATAACCACCTAGAGACGTACCGCGACCCGCAGGTCCCGCCCCCGCTGCCCCCTGCTCTGGGAGGGGCCAAACGAGAGAAGCCATTCTTCACACGGAACCCAGCAGAGCTGAAGGGAACTTTCATCAACACCAAACTGAAGAAGAGCCGCCGCGGATTCGGCTTCACCGTAGTTGGGGGCGATGAGCCGGATGAGTTCCTGCAGATCAAGAGTTTAGTCCTGGATGGTCCTGCTGCTGTGGATGGGAAGATGGAGACAGGTGACGTGATAGTGAGTGTGAACGACACCATCGTTCTGGGCTACACCCACGCCCAGGTGGTGAAGATTTTCCAGTCCATCCCGATCGGCTCCATGGTGGACCTGGCCCTGTGCCGCGGCTACCCCCTGCCATTTGACCCTGACGACCCCAACACCAGCTTGGTGACCTCCGTGGCCATCCTGGACAAGGAGCCCATCATCGTCAATGGCCAGGAGAGCTACGACTCTCCGTCCAGCCACGGCAGTCAGACCGGAGGGCCTGTTAACGGGATGAGGGAGCCGCGGGCCCACAGTCCCTCGGCAGAGGTGGTGTCCAACGGCTCTCACGGCTACTCCTCCAGCGACGTGGTCACCCTGGCATCATCCATCGCTGGGCAGCCAGAGCTGATCACAGTGCACATGGAGAAAGGCGATAAGGGCTTTGGGTTCACCATCGCTGACAGCCTGACGGGAGGGGGTCAGAGGGTGAAGCAGATCGTGGATTACCCCCGCTGCAGGGGCCTGAAGGAGTCAGATATTCTGATGGAGGTGAACAAGAGGAATGTCCAGAACATGAGCCACAACCAGGTGGTGGACCTGCTCAGCAAGTGTCCCAGAGGGAGCGAGGTCACCATGCTGGTGCAGAGAGGAGTGGTGGCGGCCAAGAGGAGCCCCAAGCTGGTGCAGCAGCTGGAGAGGAAGGACAGTCAGAGCAGCTCCCAGCACAGTGTGTGCAGCCATCGCAGCACCCACACAGACTCCCCCAGCCACCCCCCCTCCAACATGCCCAGTGAGGCCATGGCCCCCCCTCCGGCCGCACCCACTCAGCCACTGCCTGGCTTGCCTCCGCTGCCCACCCAGGACCCTGTAGATGGCACCATGACCCTCCAGAAGAAGCCAGACCCCTTCAAGATCTGGGCCCAGTCCAGGAGCATGTATGAGAGCAGACAGCCAGATTGCCAGGAGCAGGAGATTTTCCTGTGGCGGAAGGATACAGGATTTGGGTTCCGCATCCTTGGAGGAAATGAGCCTGGGGAGCCGATCTACATTGGACACATAGTGAAGTACGGTGCAGCAGATGAGGACGGACGCCTGCGTTCTGGGGACGAGCTCATCTGTGTGGACGGCACGGCGGTGGTGGGGAAGTCTCACCAGCTGGTGGTGCAGCTGATGCAGCAGGCCGCCAAGCAGGGCCACGTCAACCTCACAGTCCGACGCAAGAGCTCTGGATACGGAGTTTCGAAAGGGGAGGGTGACGTGCCCCCGTCCCCTGCCTCGTCCCACCACAGCAGCACCCAGGCCCCCTCCCTGACGGAGGGAAAGCGGACCCCGCAGGGCAGCCAGAACTCCCTCAACACGGTCAGCTCTGGCAGTGGCTCCACCAGTGGCATCGGCAGTGGGGGAGGAGGTGGCTCCGGCAGTGCTGTGGTCACCGCAGCCCTGCAGCCCTATGACGTGGAGATCCAACGTGGAGAGAATGAGGGCTTCGGATTCGTCATTGTGTCATCTGTCTCTAGGCCTGATGCTGGGACTACATTCGCTGGCAATGCATGTGTGGCCATGCCCCACAAAATAGGGCGCATCATCGAGGGGAGCCCTGCGGACCGCTGTGGGAAGCTGAAGGTGGGCGACCGCATCTTGTCCGTCAACGGCTGCTCCATTACCAACAAGTCCCACTCGGACATCGTCAACCTGATCAAGGAGGCCGGGAACACAGTCTCTCTGAGGATCATTCCTGGTGATGAGTCCTCCAACGCGTCTCTGTTGACCAACGCTGAGAAGAttgccaccatcaccaccacgcACACACCCCAAACTGCCACGGAGCCTCGGAACAACTCAAAGTCGAAACaggctcctcctccacctcctccaacaCAAGCTCAGCCCTCACAGgaTGCCGAGTTCTACTCTGTGGATCTGGAGCGGGACAGTAAAGGCTTTGGGTTCAGCCTGAGAGGAGGACGGGAGTACAACATGGACCTATATGTGTTGAGGCTGGCTGAGGACGGGGCGGCTGGCAGGAATGGCAAGATGAGGGTGGGAGATGAGATCCTGGAGATCAACGGCGAGAGCACAAAGAACATGAAGCACGCACGGGCCATCGAGCTGATCAAGAATGGTGGCCGGAGGGCACACCTGGTCCTCAAGAGGGGCGATGGATCTGTACCTGAATATGACTCCAGCCATGACGGGCACTCTCCCACACCCGGGGCACAAAACTCTCCGGAAGTGAGAACCCTGCCACCAAACAGCCGATATCACACCTCATCGGAGTCAAGTTATCCACAAGACCTTCACAAACCATCACGCCACAAGGATGCTGCGCAGGGCCGAGACAGGGACAGGATGGAGCACCAGGGCCAGCACTTTAacccccaccaccatcacacctggaacaacaaccacagccatACCACCCCCAGCCAACACTACCCTGAAAACAGTGGCGGCAACAATAAGAAGAGCCGGGGACGCAAAGTCAACAAGTCAGAGTCAGAGAGCGGCATCTCAAAACTATTAAAGACTCTGCGTaaggacagctctaggaagaaggCTGCAGCTGCAGTGGCAGCTACAGAACGAGAGCGGGAGCTCTCCGCTAGTAGCAGTACTCTAGACCCGAGGTACAGTCGACCACGCCGCGGCTCCCTCGACCGTTCGCCCACCCGTAAACATAAAGCCTCCCCTGACCGACGGCGGGCCAAGTCCATGGACCGCAGGGTTGAGCGAGCACACCGAGGCCGCACACCCGAAAAGGAGAGCGAGGACGGAGGTTTCATCAGTCATGCGGCTACTCCTGAACAACCACTCTACGACCGCAGGCTCCTGAGGGAACCACAGACCCTGGGCCGAGCCTACTTAGAGGCCACCACCCCAGAGCGCCTGAACAAAAGggcttcctccctgtctctttccaGGGGGTGGACTCCTGACAGAGGCAGCCTGAAGAACGGCAACCTCCTGAGGGACTCGCCGGTTGAGACGAGGGAGGAGAGGTATGGGATGAACGGAACGCCAGAGAGACGGTACAGGTCAGAGAGAGATTCATCTCCAGACAGCAGCTATAGCAGGGAGGAGCTGAACTACTGCAGTACACTGAAGAACAATGCCTCCACTCACAACCACACAGGCTACAACGCAGCAGGACACTGCAACAACGCAGCAGGACACAACAACACAGCAGGACACAACAACACAGCAGGACACAACAAAGCAGCAGGACACAACAACGGAGTAGGTCGCGCCCAGAACCAGTTCCCCGTGCCTATGAGAAGGCTTTACAAAGAGATCCCGAAGGACCTCAGCATCTGAGTGGACAGAGCCTGGACCCTGGCCTCTCACCCCTCAACCTGTGTAGGCCACAGCACATACACTGGACTTGGACTTCTAAGGAGATTAACTCGTGATTTATCCAATCGCCTGgttgattgattcattgatttGACTACTTGTGATCCGGGACAGAGATTCATACCACAGCAGGAGTACaatcttttttttgtttgtaCTGTATGTTTTGCTTCTGTTCACATTATTTTGAGCATTACGGCAGTTGTTAATACTGTAGTGAAGGTATGTGTATGTGCCTATCACATCACAAATGGCGATTTAGCTTTTTTTGGGCATCTCTGTTTGGAACCTCAGAGGGAACACATACAGTCGCTAGTGAAAGACTACACACCacttgcacagtcttcacattttgctgcctcgAAATGCAATCCAAACATTTATTAAATTAGATTGGTAGAACAATTATCTACaaaacctactccacattttcgaagtgaaagaaaaat

Function

NR:

description
membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1-like

GO: NA

KEGG:

id description
K05631 AIP3, WWP3, BAIAP1; atrophin-1 interacting protein 3 (BAI1-associated protein 1)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986939.1 True 4937 mRNA 0.57 22 34946140 35104382

Neighbor

gene id symbol gene type direction distance location
LOC110531961 LOC106571864 coding upstream 263356 34642919 ~ 34682784 (+)
LOC110531960 NA coding upstream 333649 34610290 ~ 34612491 (+)
LOC118966029 NA coding upstream 553178 34385884 ~ 34392962 (+)
LOC110531955 143b2 coding upstream 596843 34344355 ~ 34349297 (+)
LOC110531954 LOC106566658 coding upstream 647875 34281341 ~ 34298265 (+)
LOC110531964 LOC106571867 coding downstream 111489 35215871 ~ 35360678 (+)
LOC110531967 NA coding downstream 295297 35399679 ~ 35403549 (+)
LOC110531968 LOC106571869 coding downstream 317183 35421565 ~ 35469496 (+)
LOC110531969 LOC106571870 coding downstream 382986 35487368 ~ 35496138 (+)
LOC110531971 LOC106571873 coding downstream 440395 35544777 ~ 35551977 (+)
G797326 NA non-coding upstream 8293 34933988 ~ 34937847 (+)
G797312 NA non-coding upstream 23744 34882000 ~ 34922396 (+)
G797319 NA non-coding upstream 30155 34913655 ~ 34915985 (+)
G797309 NA non-coding upstream 70258 34868307 ~ 34875882 (+)
G797225 NA non-coding upstream 78573 34770063 ~ 34867567 (+)
G797224 NA non-coding downstream 116 35104498 ~ 35108733 (+)
G797708 NA non-coding downstream 10572 35114954 ~ 35115290 (+)
G797730 NA non-coding downstream 23937 35128319 ~ 35128622 (+)
G797739 NA non-coding downstream 28580 35132962 ~ 35133250 (+)
G797775 NA non-coding downstream 57211 35161593 ~ 35161831 (+)
G797056 NA other upstream 389518 34555931 ~ 34556622 (+)
G796495 LOC106613263 other upstream 824400 34121422 ~ 34121740 (+)
G794886 LOC106577459 other upstream 2358752 32583606 ~ 32587388 (+)
G794893 NA other upstream 2443391 32502396 ~ 32502749 (+)
G794892 NA other upstream 2443785 32501847 ~ 32502355 (+)
G797932 pphln other downstream 260606 35364988 ~ 35372148 (+)
G799053 NA other downstream 1208747 36313129 ~ 36316805 (+)
G799578 LOC106571900 other downstream 1930036 37034418 ~ 37035918 (+)
G799858 LOC106571908 other downstream 2462863 37567245 ~ 37570411 (+)
G800834 NA other downstream 2965834 38070216 ~ 38071433 (+)

Expression


Co-expression Network