LOC110531964 (LOC106571867)


Basic Information

Item Value
gene id LOC110531964
gene name LOC106571867
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 35215871 ~ 35360678 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987863.1
tctcattacacacacacatgccatttATGTAGAGGATGCCAACCCAACTTGAAGGTACTGGTCTGTTGTGGTGCTCCCGTGCTACCTTTGCCTCTGAGCAGCCTTGATGAGAGACACAGAGCCTGGAGGGaaatgaaagagagaggtagagagaaggagagagaataacagagtgagggagagagagctttCAGCCTCCAGTCTTGCCTCTCCTCtgtgtgctgctgctcctgctgctgctgcttcattTCAGCCAGAGCCAGAGGCTGAGCTGGTGTTTCTCAGTTAACTACAGATAGACAGAGCAGTGAGTTGTGAACAGTACAGTACTTCTGTCACACCACTGCCATGACTCTACTGACGTGAGTCAGAAGAGAGAGTTCCCCCTGTCCACCACCTCTCTACGGCTACAGCTACAGAGAAGACTGGTGTCCACTCTAAGAGTCCCAGTGAGGAGCATGTGGTGAGGGCCATGTCTCTGGAGATGGAGAAGAGTGTCACTAAGTTGATGTACGACTTCCAGAGGAACTCTACTTCTGACGACGACTCAGGCTGCGCGCTGGAGGAATACGCCTGGGTGCCCCCTGGCCTCAGCCCTGAACAGGTGCATCAGTACTACAGTTCTCTACCTGAGGACAGGGTGCCGTATGTGAACAGCCCAGGAGAGAAGCACCGCATCAAACAGCTGATTCACCAGCTGCCCCCGCACGACAACGAGGTCCGTTACTGTAACGCGCTGGACGACGAGGAGAAGAGGGAGCTCAAGCTCTTCAGTAACCAGAGGAAAAGGGACAACCTGGGCCGAGGCAATGTCCGCCCTTTCCCACTGTCCGTCAGTGGGGCCATCTGTGAACAGtgtggGGGCCAGATAAATGGAGGGGACATTGTGGTGTTTGCGTCACGGGCAGGCCACGGCCTGGTGTGGCACCCTCACTGCTTTGTGTGCAGCATGTGTGAGGAGCTCCTGGTGGACCTCATCTACTTTCACCAGGAAGGGAAGATCTACTGCGGCCGGCACCATTCAGAGATGCTCAAACCCCGCTGCTGTGCCTGCGATGAGATTATTTTTGCTGATGAGTGCACAGAGGCAGAGGGCAGGCACTGGCACATGAAGCACTTCTGCTGCTATGAGTGTGAGGCTCCGCTGGGCGGCCAGCGCTACATCATGAAGGATGGACGTCCACACTGCTGCCACTGCTTCGAGTCCCTGTATGCAGAGTACTGTGACGCCTGCGGTGAACACATAGGCATTGACCAGGGCCAGATGACATATGACGGGCAGCATTGGCACGCCACAGAGGAGTGTTTCTGCTGTGCCCGCTGTAAGCGTTCCCTCCTGGGGCGCCCCTTCCTGCCCAAACAGGGACAGATCTACTGCTCACGCTCCTGCAGCGCCGGACAGGACCCAGACGAGTCAGACTCATCTGACTCGGCCTTCCAGAGTGCCCGCTCCCGTGAGTCTCACCACAGCATCAAGATTCTAAAACCGGAGCGCCGAAATGCAGAGCAGGAGCGTCGCCAGCCAGCGCCCATGACTGATCGTCTATCTGTTGAGGTGGACCCCCTGTCTATCCAGATGGACCATCTGAGCCTTGGCTCTAGCCAGACACCCAGTCGAACACCCAGCCGCACACCCAGTCACGCCCCCAGCCGCACCCCTAGTCTCAACCAAGTGTGGATGAGCCGGGATGAACCTTACCCCCCAGCCTATGAGACAGCCAACGAGGGCTCCCAGCAGGATGCCTCTCCAACCCCCAATTCCCTGCTCCTGGGCCTGTGTAACCCCAGGAAAGGCTACAGCCCCAGCTCCCACAACCCCCTGCCCCCAGCCCAGAGCCCTGTCAACCCAGGAAAAAGGCCTGAGTCCAGAGCTAAAGTGCAGGGCAACACGAAGCGAACGCCCATGGCGGCACTGAGGGGTCAATCCTTCCAGGACAACTGGATCCACCACAGCCAAGACGAGTTCCGCCCACCCAAGCTGAGGACCCAGATGAGCTTCAACGAGGTGTCCAGCCAAGGCCAGGGCTTCTCGAACAAGAGGAACATCAGCATGCATGGCTTCCAGAGGGACAGCAGGCCCCCCCTGACCAGGACCAGGAAAGCAATGAGCAATGGTATGAGCTTCACAGAGCCCCTCACCCCTCTGGAACAGACCCCCCGAGGATCTATGGAGTCTCTGGCCCTGTCCAATGCTACAGGTAACTCACTGGATGGGGTAAGTAAGCGTCAAGAGCACCTGTCCCGATACTCCATGCCAGACCTTAGTAAGGACTCTGGGATGAATGTGTCTGAGAAGAGTAACATTGGCACACTGGGTTCCTCTGTCCAGTTCCGCAGCTCTGAGTCCCTGACCTCTCGGCCCTACGGGTACCTGAATGCTCCTGTGCAGGTGGGGTACCCCCTGGGGTACTGGGATTCCCCCCAGCCCCTGGCCTTTAAGGGTACAGGTCGCGTGGGCCTAATAGGGAGTAGTGGTAACCTCCGCATGACCCCCATGAGTGAGAGGATCCCTCGTCGTCGGCCGAATGGGCCAGAGCCCATACAGCAACAACAACCAACACAATCACGGCGACGCAAACACCGTGGCAATGGTAATGATGGAAACGGCAACCACCGCAGCAGCGGTCGCCACTACCGGCGTTCTCGGCGCTCACGCTCTGACAATGCCCTCCACCTGACGGCCGACCGGGGAAGTCATATGATGGAACCCCCGCACCGTCGTGTTCAGGAGGACTATGACCGTTTCCCCGCCGGCCGTACCGCCCGGGACCTGTTTGTGGTGGAGGGCATAGGCGGGTACAGACAGCAGCCTTACAGACCCTGCCCCCGCACCACCTCAGACCTCACCCTGCACAATGCAGCGGGGGGTGGGGGGATGCAGTCGCTGGGCCTTGGGGGACCACACTTGGGTGGGGAGGGATACGGGGAGGGGGCGGACCCCTGGTGCTCCAGCTGCTCCTCATCCTCTGAGTCTGAAGAAGACGAGGGTTACTTCCTGGGGGAGCCCATCCCCAGACCTGTCCAGCTACGCTACCTCCACAATGAGGAGCTGCGCCACAGATACAGCCCTACAGggatgggagggatggggggCCACCATGGACCCATACATGGACCCCTACATGGAGGAAACCAAGGGCAGCTGCACGGACAGCTCCACATGCGCCAGAGGAGGAAGAGCAAGAACTGCATCATCTCATAGAGAGAGTTAGGGATggtgagaatggagagagagggagtgggagggtgacagagaaaaagaaagtgagaaaggaaggaaggagagggagtgggagggggagagagaaaggggggagagagagtataTGAAAGAGTGATCGTGTGTGTGTCAAAGAGAGGCCTATATATATTTGATGTGTGTGAGTTACAC

Function

NR:

description
prickle-like protein 2

GO: NA

KEGG:

id description
K04511 PRICKLE; prickle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987863.1 True 3391 mRNA 0.58 9 35215871 35360678

Neighbor

gene id symbol gene type direction distance location
LOC110531155 LOC106571865 coding upstream 111489 34946140 ~ 35104382 (+)
LOC110531961 LOC106571864 coding upstream 533087 34642919 ~ 34682784 (+)
LOC110531960 NA coding upstream 603380 34610290 ~ 34612491 (+)
LOC118966029 NA coding upstream 822909 34385884 ~ 34392962 (+)
LOC110531955 143b2 coding upstream 866574 34344355 ~ 34349297 (+)
LOC110531967 NA coding downstream 39001 35399679 ~ 35403549 (+)
LOC110531968 LOC106571869 coding downstream 60887 35421565 ~ 35469496 (+)
LOC110531969 LOC106571870 coding downstream 126690 35487368 ~ 35496138 (+)
LOC110531971 LOC106571873 coding downstream 184099 35544777 ~ 35551977 (+)
LOC110531972 LOC106566626 coding downstream 305744 35666422 ~ 35744420 (+)
G797844 NA non-coding upstream 7468 35208116 ~ 35208403 (+)
G797842 NA non-coding upstream 8678 35206886 ~ 35207193 (+)
G797808 NA non-coding upstream 30566 35184859 ~ 35185305 (+)
G797804 NA non-coding upstream 34430 35181177 ~ 35181441 (+)
G797795 NA non-coding upstream 43332 35172320 ~ 35172539 (+)
G798000 NA non-coding downstream 81914 35442592 ~ 35449033 (+)
G798001 NA non-coding downstream 85371 35446049 ~ 35452569 (+)
G798006 NA non-coding downstream 95791 35456469 ~ 35487180 (+)
G797056 NA other upstream 659249 34555931 ~ 34556622 (+)
G796495 LOC106613263 other upstream 1094131 34121422 ~ 34121740 (+)
G794886 LOC106577459 other upstream 2628483 32583606 ~ 32587388 (+)
G794893 NA other upstream 2713122 32502396 ~ 32502749 (+)
G794892 NA other upstream 2713516 32501847 ~ 32502355 (+)
G797932 pphln other downstream 4310 35364988 ~ 35372148 (+)
G799053 NA other downstream 952451 36313129 ~ 36316805 (+)
G799578 LOC106571900 other downstream 1673740 37034418 ~ 37035918 (+)
G799858 LOC106571908 other downstream 2206567 37567245 ~ 37570411 (+)
G800834 NA other downstream 2709538 38070216 ~ 38071433 (+)

Expression


Co-expression Network