LOC110531966 (LOC106571884)


Basic Information

Item Value
gene id LOC110531966
gene name LOC106571884
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 35381661 ~ 35400349 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615514.2
TAGCGAATAGTATGGAAGGCTTGTTTGAGGAGCTAGTGAGGCTGAAGGTCCACAGTGTCCCAGTATCGGATGAAGGAGTTCCTGGAGTCCCTGTCCAACAAGAGCTCAGAGGCACTGCAGGAGTTCAACCAGCAAGCAGGTGTTatcactacaaccaccaccatgGTTTACCAGCAGGGGGTCAACTGCATCTACACAGACAGCAACGAGGTGGCTGGGTCACTGCTGGAACTGTCTGTCTGCAACAGCAGGTACAGGTGTCCCAGCAGAAGGTGATGTCATGACAGCAGCAGCTCTCGCCCCATATGACCACAGCCGCAAGGGCAAGACATAATACAGACAAATGACCTAGGAAGAGCTCACAGTGACAAGAAGCAGAGGTCCTCGGGGGACAGGATCGTCCTTCCGTCCAGTCTAAAGGATGAGGGTGGACAGGCATCACACATGAAAGTGTGTGAAGAGGTGCAGGAAGAAAATGCAGAGGCTGTGAAAACCCCATCTGTCTGTGAACCACTGGATATTGAGGACTTGGAGGAGTCTACTGTAAAGGAAAGTCCAGTTCCTCCAAAGGACACTGAAGATACAGATAAGGCTTCAACCGAGGGCCAACAACTGGTAGAGGAACACAACCCTGACATCCTCCTACCTCACCCTGTTGATGCCCTGGAGAATGCCTATGTGAACACCCCCCCTGTTTGTGAACCACTGATTATTGAGGACTTGGAGGACTCTCCTGACAAGGAATATCCAGCTCCCCGAAAGACTGAGGATGTAGAATGTGCTTCAGCACAGGGCCAAGAACAGATCCAGGTAGATAAGGACCGAGATAAGGACAAAGACCATGATATGCCCCTCCCTTGCTGCTTAGATAACCTGAAGAAGCGCTTCTACCAGAGCAGGGACCGCCAGATCAGGGAAAGACACTGGGCCCAGTTCAGAGCAGAGACCCTGAGGGTGGCCCACCAAGGGATAGTTGTCCTGCAACGTGAcctggagctggagctggagcGGGTTAGAGAGGGCCTAGAGGATAGACGGCAGCGCAGAGAGAGGGACCATTACACTCTGGCccaagtgaagagagagagacagaaaaagagagaagagcaGATAAAAGGATGGATGGAAAAGTGGATGatagggagggaagaggagagccaGGGGGAAGAAGGTGcggaagagggggagacagaggaagaggagaaagagggagaggaggaaagtgaAAAGGAAGAGGAGAGTGAGGATGAAGAGGGTGATACAGAGGGAgcggaagagaaggagaaagaggagaaggtggaggagggagacagggaggggagtgAAGAGGAGAGTGAGGCGGATgaagagagcgaggaggaggatGGCATAGAGACTATCTGCAAGGAGGTGAAGATGCAGATGCACTTGATCAAGGGCGACATTGAGCATGATATGAAGAATGACTATGAGCAGAACAAGAATAGGGAAGTCCAGGACCGGAAGATGTTGACCACCCTGCTGCAGTGCTTGGAGTCAGTCTACCAGACACGCACTGAGGAGATACTGGGCAAGATAGGCATGCTGTGGGACATCATGATCAACAACATGCTCCAGGACCTCCATGGAAGGAGAGCAGCCCAGAAGTCAGTGTCTGCCCAGACTGCGCAGTATCTCCACTTCTGCCACAGTCCCCGTCTGGCCCCCATTACCCCTCTGACTGAAGCGGGCAGGAGGCTCCTCAAGGGATGGGCAAGAGGCCAACAGGATGACGAGGCAAAGAAGACTGGCAAAGGGAAagggaagaagaaaaagaagaagacacagagagaacaagtGAAGGATGAGGAGAAAGACAGTCAGTTGCTGCAGAAGGAGGAAATGGTGGAAAGTAAGCCAGAAGAGAATAAAAAGTCAGGGTTTCTCCAATTGCTGCTGCTCAAACTGACATGCATTCAATGATGACAAAATATTTAGAAAAAATAAAGTTTGAAACCAGCTTGATTTTGTTTTTGATTTTGATAATCTTTGGTTTATCCATCTGGGTTTCACCCAATGATTGCATATAAACTCTGGATTACTGATactatgtattggccaatgagaggctttaAAGCCACCGGTCAGCCATATTGGTGCTCCCCAGAAGAAGCAGTCCTCCATATGAATGAATGGAAttatacagtatttcaattaaatgttctAAAGACACATTTGTTGATGTAGTGGGAACAGTAACagaacttaaaaaaatatatacttaaaGGAAAATGTTAATATAGTTTTCAATTTTATGTTCAGTTTATATAATACAATTTTAAAGTGTGCATTAATGTGTCTGTACTAGAATAAAActggcaaaaacaaatgtagatgttaataaattgatttttatagcttccaaaataaaaaaaaacacagtggAGGAGTGCCAAATAGGAGGCTGGCTTCAACACAGCGCCTCCTGTTAGGTATCTAGTAGTAGTGCATTCTGAGAGTATTGAGACCCctccactttttccacattttgttacgttaccgccttattttaaaatggatttaaaa
>XM_021615511.2
ATATCTTGCATGTGCATTTCCCTGTGGATATATTTTTTACATCGACTCTTTTTTGAATTAGCACAGTAAACATCTACTTGGAATCATTTGTTATATTAGCTTTGCTGCAAGGACTTTTGTTTAAACGTTCCCTCCTTTGCAAcagaccggctaatgaatacacccctggccGTACAGTACCGTTTCGGTTTAATTCAACGTTGCACACTGTTCTGTCATACTGAAAGCAACACTTGCTGAACAGGAATCTAGATCCTACTATCGTCAGTGAGTGGACGGCCACAATAGTTAACATTTTCCTCAGCAAATATTATTGATCTAAAACTTTATTTTCCATCCAAAACTCAGGCATGTTTCTTGTGAACCGACCAAATCTGACTAGCTGTGTACCACAACCCCATTGATGTACAGCCATTGTAACGTATGCCTTCATGACAGTAAGTCATTAACAGCAGGGTTATGGTACAATACTAATTGACATGCATCGTGTTTGTCACCTTAGAGTAGCGAATAGTATGGAAGGCTTGTTTGAGGAGCTAGTGAGGCTGAAGGTCCACAGTGTCCCAGTATCGGATGAAGGAGTTCCTGGAGTCCCTGTCCAACAAGAGCTCAGAGGCACTGCAGGAGTTCAACCAGCAAGCAGGTGTTatcactacaaccaccaccatgGTTTACCAGCAGGGGGTCAACTGCATCTACACAGACAGCAACGAGGTGGCTGGGTCACTGCTGGAACTGTCTGTCTGCAACAGCAGGTACAGGTGTCCCAGCAGAAGGTGATGTCATGACAGCAGCAGCTCTCGCCCCATATGACCACAGCCGCAAGGGCAAGACATAATACAGACAAATGACCTAGGAAGAGCTCACAGTGACAAGAAGCAGAGGTCCTCGGGGGACAGGATCGTCCTTCCGTCCAGTCTAAAGGATGAGGGTGGACAGGCATCACACATGAAAGTGTGTGAAGAGGTGCAGGAAGAAAATGCAGAGGCTGTGAAAACCCCATCTGTCTGTGAACCACTGATTCTTCAGGATATTGAGGACTTGGAGGAGTCTACTGTAAAGGAAAGTCCAGTTCCTCCAAAGGACACTGAAGATACAGATAAGGCTTCAACCGAGGGCCAACAACTGGTAGAGGAACACAACCCTGACATCCTCCTACCTCACCCTGTTGATGCCCTGGAGAATGCCTATGTGAACACCCCCCCTGTTTGTGAACCACTGATTATTGAGGACTTGGAGGACTCTCCTGACAAGGAATATCCAGCTCCCCGAAAGACTGAGGATGTAGAATGTGCTTCAGCACAGGGCCAAGAACAGATCCAGGTAGATAAGGACCGAGATAAGGACAAAGACCATGATATGCCCCTCCCTTGCTGCTTAGATAACCTGAAGAAGCGCTTCTACCAGAGCAGGGACCGCCAGATCAGGGAAAGACACTGGGCCCAGTTCAGAGCAGAGACCCTGAGGGTGGCCCACCAAGGGATAGTTGTCCTGCAACGTGAcctggagctggagctggagcGGGTTAGAGAGGGCCTAGAGGATAGACGGCAGCGCAGAGAGAGGGACCATTACACTCTGGCccaagtgaagagagagagacagaaaaagagagaagagcaGATAAAAGGATGGATGGAAAAGTGGATGatagggagggaagaggagagccaGGGGGAAGAAGGTGcggaagagggggagacagaggaagaggagaaagagggagaggaggaaagtgaAAAGGAAGAGGAGAGTGAGGATGAAGAGGGTGATACAGAGGGAgcggaagagaaggagaaagaggagaaggtggaggagggagacagggaggggagtgAAGAGGAGAGTGAGGCGGATgaagagagcgaggaggaggatGGCATAGAGACTATCTGCAAGGAGGTGAAGATGCAGATGCACTTGATCAAGGGCGACATTGAGCATGATATGAAGAATGACTATGAGCAGAACAAGAATAGGGAAGTCCAGGACCGGAAGATGTTGACCACCCTGCTGCAGTGCTTGGAGTCAGTCTACCAGACACGCACTGAGGAGATACTGGGCAAGATAGGCATGCTGTGGGACATCATGATCAACAACATGCTCCAGGACCTCCATGGAAGGAGAGCAGCCCAGAAGTCAGTGTCTGCCCAGACTGCGCAGTATCTCCACTTCTGCCACAGTCCCCGTCTGGCCCCCATTACCCCTCTGACTGAAGCGGGCAGGAGGCTCCTCAAGGGATGGGCAAGAGGCCAACAGGATGACGAGGCAAAGAAGACTGGCAAAGGGAAagggaagaagaaaaagaagaagacacagagagaacaagtGAAGGATGAGGAGAAAGACAGTCAGTTGCTGCAGAAGGAGGAAATGGTGGAAAGTAAGCCAGAAGAGAATAAAAAGTCAGGGTTTCTCCAATTGCTGCTGCTCAAACTGACATGCATTCAATGATGACAAAATATTTAGAAAAAATAAAGTTTGAAACCAGCTTGATTTTGTTTTTGATTTTGATAATCTTTGGTTTATCCATCTGGGTTTCACCCAATGATTGCATATAAACTCTGGATTACTGATactatgtattggccaatgagaggctttaAAGCCACCGGTCAGCCATATTGGTGCTCCCCAGAAGAAGCAGTCCTCCATATGAATGAATGGAAttatacagtatttcaattaaatgttctAAAGACACATTTGTTGATGTAGTGGGAACAGTAACagaacttaaaaaaatatatacttaaaGGAAAATGTTAATATAGTTTTCAATTTTATGTTCAGTTTATATAATACAATTTTAAAGTGTGCATTAATGTGTCTGTACTAGAATAAAActggcaaaaacaaatgtagatgttaataaattgatttttatagcttccaaaataaaaaaaaacacagtggAGGAGTGCCAAATAGGAGGCTGGCTTCAACACAGCGCCTCCTGTTAGGTATCTAGTAGTAGTGCATTCTGAGAGTATTGAGACCCctccactttttccacattttgttacgttaccgccttattttaaaatggatttaaa
>TU908411
TCCAGTCTTACTTCCAAATGACTGGAAAGTCAACTAGATAGGTTCAACAGTGCCAACATGTCGAAGGAACATACTGACTAATAACCAAATGAATAACCATTTATTAAACATGGCTTTGCATCATTAGACAAATGACCTAGGAAGAGCTCACAGTGACAAGAAGCAGAGGTCCTCGGGGGACAGGATCGTCCTTCCGTCCAGTCTAAAGGATGAGGGTGGACAGGCATCACACATGAAAGTGTGTGAAGAGGTGCAGGAAGAAAATGCAGAGGCTGTGAAAACCCCATCTGTCTGTGAACCACTGATTCTTCAGGATATTGAGGACTTGGAGGAGTCTACTGTAAAGGAAAGTCCAGTTCCTCCAAAGGACACTGAAGATACAGATAAGGCTTCAACCGAGGGCCAACAACTGGTAGAGGAACACAACCCTGACATCCTCCTACCTCACCCTGTTGATGCCCTGGAGAATGCCTATGTGAACACCCCCCCTGTTTGTGAACCACTGATTATTGAGGACTTGGAGGACTCTCCTGACAAGGAATATCCAGCTCCCCGAAAGACTGAGGATGTAGAATGTGCTTCAGCACAGGGCCAAGAACAGATCCAGGTAGATAAGGACCGAGATAAGGACAAAGACCATGATATGCCCCTCCCTTGCTGCTTAGATAACCTGAAGAAGCGCTTCTACCAGAGCAGGGACCGCCAGATCAGGGAAAGACACTGGGCCCAGTTCAGAGCAGAGACCCTGAGGGTGGCCCACCAAGGGATAGTTGTCCTGCAACGTGAcctggagctggagctggagcGGGTTAGAGAGGGCCTAGAGGATAGACGGCAGCGCAGAGAGAGGGACCATTACACTCTGGCccaagtgaagagagagagacagaaaaagagagaagagca
>TU908413
AACACTGCGACTGGAGTGTAACTGTAAAATGGCGCTCAGTGAAATCAGAGACAATTTGTGGCTCCAATGCACAAGAATACGCTCTTACGGGCGTGTCCATCCAAACAGTCAAGTTGGATGGAAGAAGAGTAGCGAATAGTATGGAAGGCTTGTTTGAGGAGCTAGTGAGGCTGAAGGTCCACAGTGTCCCAGTATCGGATGAAGGAGTTCCTGGAGTCCCTGTCCAACAAGAGCTCAGAGGCACTGCAGGAGTTCAACCAGCAAGCAGGTGTTatcactacaaccaccaccatgGTTTACCAGCAGGGGGTCAACTGCATCTACACAGACAGCAACGAGGTGGCTGGGTCACTGCTGGAACTGTCTGTCTGCAACAGCAGGTACAGGTGTCCCAGCAGAAGGTGATGTCATGACAGCAGCAGCTCTCGCCCCATATGACCACAGCCGCAAGGGCAAGACATAATACAGGTCAGGACTTTTTCCTcgttctcctttctctcccttctttctccctcatcattctgtctctgtctgtctcactgccaCTATCCTAAAAATGAGTGGCAATTAttaaagtgcattcagaaagtattcagacaccc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615514.2 False 2544 mRNA 0.47 9 35381661 35399054
XM_021615511.2 False 3056 mRNA 0.46 9 35381662 35399558
TU908411 False 906 TUCP 0.50 5 35385853 35387132
TU908413 True 602 lncRNA 0.50 3 35398481 35400349

Neighbor

gene id symbol gene type direction distance location
LOC110531965 pphln coding downstream 9202 35364052 ~ 35372459 (-)
LOC110531962 LOC106571888 coding downstream 578827 34729334 ~ 34802834 (-)
LOC110533011 LOC106571887 coding downstream 660345 34715740 ~ 34721316 (-)
eif2d eif2d coding downstream 745367 34617500 ~ 34636294 (-)
LOC118966030 NA coding downstream 774528 34596540 ~ 34607133 (-)
LOC118966032 LOC106571870 coding upstream 95506 35492026 ~ 35521884 (-)
LOC110531156 wdr46 coding upstream 157309 35556867 ~ 35562538 (-)
LOC118936388 LOC106571889 coding upstream 164703 35564261 ~ 35566271 (-)
LOC110531974 LOC100136369 coding upstream 456550 35856108 ~ 35859824 (-)
LOC118936413 NA coding upstream 461087 35860645 ~ 35869013 (-)
G797846 NA non-coding downstream 172765 35208631 ~ 35208896 (-)
G797809 NA non-coding downstream 196357 35184859 ~ 35185304 (-)
G797792 NA non-coding downstream 210358 35171097 ~ 35171303 (-)
G797764 NA non-coding downstream 227918 35153526 ~ 35153743 (-)
G797755 NA non-coding downstream 234029 35147423 ~ 35147632 (-)
G798223 NA non-coding upstream 7287 35406845 ~ 35407564 (-)
G798248 NA non-coding upstream 40723 35440281 ~ 35446932 (-)
G798325 NA non-coding upstream 184001 35583559 ~ 35583881 (-)
G798340 NA non-coding upstream 201245 35600803 ~ 35601047 (-)
G798344 NA non-coding upstream 203875 35603433 ~ 35603650 (-)
G798195 NA other downstream 26986 35354219 ~ 35354675 (-)
G797605 NA other downstream 505782 34869955 ~ 34875879 (-)
G796733 rl32 other downstream 1324112 34051059 ~ 34057549 (-)
G794311 LOC106577443 other downstream 3353393 32026071 ~ 32028445 (-)
G793842 NA other downstream 3719463 31661239 ~ 31662198 (-)
LOC110531979 brpf1 other upstream 577864 35948544 ~ 35979307 (-)
G798993 NA other upstream 750780 36150338 ~ 36150637 (-)
LOC110531982 LOC106571893 other upstream 1428338 36827882 ~ 36907700 (-)
G800318 NA other upstream 1944837 37344395 ~ 37345147 (-)
LOC110531966 LOC106571884 other downstream 11349 35381661 ~ 35400349 (-)

Expression


Co-expression Network