XLOC_026671


Basic Information

Item Value
gene id XLOC_026671
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 40774418 ~ 40777723 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053084
tcacaAGCCAGGAGTATGAAACCAAAGGAAGTGCAATATTTGCTTCCTCTGCTTTGAAGAGCTGAGCCAAAAGAGGCATGGATGACTGCAACAGGCCCACCACTGTTTCACTCAGTGGATCTTTGTTTTTGTATAGCCATCCTGCAACGCTCTATCCCACCTGGCATGTGTTGATATAATCAACATGTGACTTTCTTTGGCTGAGGATCCAGCAGTTCCAACATCATCAAGCACCAGTTCAAAATGGACTTCTACATCTTTGAAAATGCCTAAATTACATGTTACAACAAATGTCTTTTACTGATCTTGAAATCTTCCcaatcactagctatgtttccatccaatgatGAAAATTAAACattgaatattgcataaaaaatttgtaaataaagaaGGGATTGCCAAATTTGTAGACACGACTAGCAAAacacaatgccagtgactcacgatcCCCACATTTCTTGGAGGTgcttataaatatacaaatgttgcacacacaaaaataggCCTTTATAAacacgagcatattgacaacacaaaagagtgcaacagtctaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053084 True 557 lncRNA 0.39 2 40774418 40777723

Neighbor

gene id symbol gene type direction distance location
XLOC_026670 smurf1 coding downstream 5870 40690212 ~ 40768548 (-)
XLOC_026669 uts2r5 coding downstream 93417 40679931 ~ 40681001 (-)
XLOC_026668 rnf216 coding downstream 109505 40600770 ~ 40664913 (-)
XLOC_026667 actb2 coding downstream 244614 40526107 ~ 40529804 (-)
XLOC_026666 NA coding downstream 369032 40396063 ~ 40405386 (-)
XLOC_026672 wipi2 coding upstream 43934 40821657 ~ 40837218 (-)
XLOC_026673 ap5z1 coding upstream 98830 40876553 ~ 40896927 (-)
XLOC_026674 foxk1 coding upstream 124020 40901743 ~ 40933415 (-)
XLOC_026675 cyp3c4 coding upstream 158371 40936094 ~ 40945724 (-)
XLOC_026676 cyp3c3 coding upstream 170238 40947961 ~ 40955780 (-)
XLOC_026659 NA non-coding downstream 592764 40180136 ~ 40181654 (-)
XLOC_026657 BX649547.1 non-coding downstream 685617 40088685 ~ 40088801 (-)
XLOC_026654 BX649356.3 non-coding downstream 816944 39957358 ~ 39957474 (-)
XLOC_026653 BX649356.2 non-coding downstream 822891 39945865 ~ 39951527 (-)
XLOC_026680 CR769786.1 non-coding upstream 534299 41312022 ~ 41312143 (-)
XLOC_026681 BX537310.2 non-coding upstream 618400 41396123 ~ 41512210 (-)
XLOC_026687 NA non-coding upstream 1405630 42183353 ~ 42205112 (-)
XLOC_026688 BX005183.3 non-coding upstream 1434987 42212710 ~ 42216013 (-)
XLOC_026689 NA non-coding upstream 1594061 42371784 ~ 42373599 (-)

Expression


Co-expression Network