LOC118966032 (LOC106571870)


Basic Information

Item Value
gene id LOC118966032
gene name LOC106571870
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 35492026 ~ 35521884 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053231.1
GGAGAGGGATCCTGAGGCTTCCTGTGAATAGGCAGAGACCAATAGAGTGATGGGAAAAAATATGTGCTTCTGTAAAGTAGGTTTCTTGGCATTCATAGCCATGGTTGTCAATTGTACTGCAGAAATGGATGGAAAGTTACAGAAAATGAAAGGTTGTGGTAGCAGCGGCAGAGAAATACTTGAGTGCAAGGTTTTACTTCAGAACAGTTGCAGTGGGTGTTGAATGGTAATGTTCTGTCCTCCCAGACAGTTGGTCTGAAATAGGATTAGATAGGGTAAATGGTGGTggtattatttttttaataaaaatatatatatttgagaggGCTATTAGTTGGCAGAGTAATTTTTCATTTTCCTCGATTTTATAGTACCGTATCACAAAGAATTCAATGTGGGTAGGCTGTGAATGGCCTCAcattccagtacagtaggtggcagtgTATGCACCTTAAATTGGATACGATCGCTCCAACACattcccaaagaagaagaatggGCGGCATGGTGCATTCTGGGCGATTCTTGGACTATGTGTGTTTGAGTGGTAAGCCTAAAGGAAGCCGACTGTAGGCGAAAGTTGTTGACAGACGTCTTTGGCTTCGCTCCAGACAGGCTCAGCTAGTAGAACTTACATCACCATGACAACCGACGTGGAGATGCTTGCTCAGCAGATAGTGGTCCATGAGCAGGTGGCAGagCGAGGCCCTGCAAGCGGAGGCTCTAGCCAGGATGGAGGCTGCTAACCCAGCCAAGTTTGGGCCTGAGAAGTACTGTCTGAAAGGAGGTCCCCTGCGACCAGCACCACCCAAAGAGATGACAGGGAAAGACCACGCTCAGGTGCTAGCTGCACAGGACTAAGGTTGGAAGGAATCATGGACTGAACTGTTATTTAGTAGTATATCATGTTTCACTGGAAATATTGTGGATGTTTCTGTACATTAAAAACCAGA
>TU908458
CCTAAAGGAAGCCGACTGTAGGCGAAAGTTGCGAGGCCCTGCAAGCGGAGGCTCTAGCCAGGATGGAGGCTGCTAACCCAGCCAAGTTTGGGCCTGAGAAGTACTGTCTGAAAGGAGGTCCCCTGCGACCAGCACCACCCAAAGAGATGACAGGGAAAGACCACGCTCAGGTGCTAGCTGCACAGGACTAAGGTTGGAAGGAATCATGGACTGAACTGTTATTTAGTAGTATATCATGTTTCACTGGAAATATTGTGGATGTTTCTGTACATTAAAAACCAGACAGGATTTAGTTTCATTGTCAGCTGTTGTAAACAATGATGATTTGGAGATCGGTGAACTAGAATCTGCTCCTTAGATTCGTGAGGTTGAAAGTATATAATCTTTGCAACACACTATCACATCGTGTCGATGGAGTGGGTGAATGAAAAGGCCACATCCTATTGTTCACATAGGTCATGTCTTTAATTAGTGTTGTGTGACGGAACCTTCTACGATAACAAAAGGCAAACTGGCAACATTATCAAAGCTACTCGACAAGTCATTCACATTTGCCACAAATACATTATTCATGTATGAAAATGTTTGGTTTAGATGCAACACAGCTGAGAGTTAGTGGTGCATGATCGATTACAGCGAACACAATACTGCTTTAGTTCAAAATGACAAGTACTATTGTATACTTTGCAAGGAAAGCGAACCAGTACTTGGATACATCAAAGTACTTATTCAACAGGTGACACAGGAGTTTGCCAACAGTATAAATTATACTTGGTAGCGTGGAATAGGTTTAGTGTTAATCTATTGTCATAGGTAAATTATCTTTAAGAGATTAATCAAGATAGTCTTTTATCCTAAAGTTGCCACAACCTTATGGATACAGAGCAGGCTGATATAGGTGCCAAGCAGAGCACTCTGTGTGCCTCAGACCTAAACAGCTCAACTGTTGGTGTTCTGAGTTAATGGTAAGTGATGCCAAGAAAGACTTTGCTGAATCAGTTGCATAAATACACTAAATACAGACTGAAGTTACAAGACTAGACAGCTATTGAATAAGGATGACAAAGGCCAATATTCTGAACCAGGCTTGGCATAAGAGAAAGTAAAtgggatgtttttttttaccctgtAAAGAGCTTTAGATTTGTTCAGAGCAGGACAGATTCTGACCCTCAGTGCACTAAGAGAGAACAGTAGGAGAAACAGCATGAGAGACTAGGACAATATCAGCTTTGAAAGCCTACTTTGGACCACTGCTGAAGTGCCTCCTAGTGATGTACACACACTGAAAGCTAATGCATCTATCCTGCAACAGACACAAACCAGCTTACAGAAACTGAAGGAGGCAAAGTAGGATTTCAAAAACAGTTTGTTGGTTTCGCTCATGTTTTGTTCAACATTTTCTTCTAGTGGTCACGACCCCCAGGGATGACAGAAGACCGAGATAAAAGATTATGTGCGAACGGCAATGAGTTTCCACTCCCCTACAAACATGTATGTGAAGATCTGACAGACAAATGTAGCGGTTACAGGTTAGACATGCTTAGTATTCAGGGCTGCATTTGTGTGCAGACAACACGTTTTCATGGCACTCACAGCTGCCATTTTAAACTATTCAGAGTAAACCAAGGTTGGGCCGATGTGATTAAATACAATATAAGGACAAAAATGGCATAGTCTGGAATTATCTGGTCATTAACGTGCAAATCAATTATATCAGCTATCGCAGTATTTGGAGTAGCATATCGTAGGTCTCATATCGCCCAACCCTTGAGTGAATGTTTTCAAAACCATGTGATCTTGAATGCAACCCTGATTCTACATGAGATATCTATTGTGTAGCAGGACTACAGATCGATGTCTGGCCTCAAATAACCTCCCTTATGACCCCTTGAATCCTCTCTCCAGTGGCCGAATACAGACATCTGTCTGTAAGTGATGATACTCTGCCCTTGTGCTTCTTACCATACAAATATAATAAAAACCAACCTGGGCTCCTAaaagacacctttatagagtgagAGTGTTATTAGTAAGTACGAGAGTGAGAAAATCAAAACACAACCTAAATGCATCTCGTGGTCGGCATCCTTCTAGTGGCTTGGCTGTCAAAACCTGAGAAAGCCTCAAGTCTGTAGATGCTTCCTCTCCTTGACCTGCACTTGGTAGGGCAATCAGGAtcggcaaagaagaaatgctattattattagcagtttattcacatcagtgcagatgaaggaaaggagtATAGGCTATTGGAGTATAGACTGAGATGCACCCTCTGGACCCTGGCTCTGGAGGGCTACTCACCAAGGGTGGCGCTGGGTGATTCCGTCACCTAACACAACCTAGTATCAACGAGATCATTGGTCATTTAAAGGGAACTACCGTCGTCTCAGGAGTAGCCTTCTAGCCCTGGGTGGGCAGCCCTGTTGTAAGCGTcaggtaatggtatgggggtatgagagaaagagacagggaggaggtgtctgtcagtgtgtcttgCTCTTCTGTTCCTGTAGCGTGCGCTGCAGCTCTCTCAGGTTCTCCGACAGCAGTTCTACCTCGTCTAGCCTCCCGTTGAGCTTGGCATCAAATATGTACGCCCGTATATTATCGATCTGCTGCAGCAGCAAATCCTCCTCAATCACGTCAACATCCGGCATcgcctcctcatcctccccctcgAAGGGATTGGTCGAGGCTCCCGGCGGGGTACACCCAGAAGCCTCTTTAAAAGGGTTACCTTCATTGTTTTCCTCCTTCACTTCGAAAGGGTTGCCAGTGGCGCCCTCGGCCTGCCCCTGCTCTTCCTCCCCACCCTCTTCCTGCTCAAACGGGTTGTACTCCTTCTTCCCGTTAGCCACCTCCTTGTGCTCCTTTTGGATCTCCTCGAAGAACGGATTGGAAGGATCCTCCACAGGGGTGGAGTCTTCCTCCTCAAAGGGGTTGAGGGAGGAGCTGTTCTGTCCCTCGCCACCAGGAGGTGTCACATCTCCCCCCAGCCTCCTCAGCCGGGGGGGTGACTCCTCATCCTGGTCGGTCAGGGCAGGGAAGGCCCTCATGGACAGGGGGCTGCTCTCTGCTTTAGGTGtcacctcttcctccccctcttcctccccatggAGGCTCCCTGTATCGGTTAGGTTCAGTGAGCCCTGCCAGGTGTATGTGGCCTGGGATCCTGGGGCTTGGCTCTGGGCCCTgtgctccctctcccccctctctctgtcctccaggcGTTGCAGCTCGTCCTGCTGTAGACTCTCCTCCTGCGCCAGCCTCTGGGACAGAGCGATGGCCAAGCTGGTCTGTTGCTGG

Function

NR:

description
rabenosyn-5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053231.1 False 953 mRNA 0.45 3 35495064 35521884
TU908458 True 3321 TUCP 0.47 2 35492026 35521332

Neighbor

gene id symbol gene type direction distance location
LOC110531966 LOC106571884 coding downstream 95506 35381661 ~ 35400349 (-)
LOC110531965 pphln coding downstream 122605 35364052 ~ 35372459 (-)
LOC110531962 LOC106571888 coding downstream 692230 34729334 ~ 34802834 (-)
LOC110533011 LOC106571887 coding downstream 773748 34715740 ~ 34721316 (-)
eif2d eif2d coding downstream 858770 34617500 ~ 34636294 (-)
LOC110531156 wdr46 coding upstream 34983 35556867 ~ 35562538 (-)
LOC118936388 LOC106571889 coding upstream 42377 35564261 ~ 35566271 (-)
LOC110531974 LOC100136369 coding upstream 334224 35856108 ~ 35859824 (-)
LOC118936413 NA coding upstream 338761 35860645 ~ 35869013 (-)
LOC118966034 NA coding upstream 352270 35874154 ~ 35879299 (-)
G798248 NA non-coding downstream 48132 35440281 ~ 35446932 (-)
G798223 NA non-coding downstream 87500 35406845 ~ 35407564 (-)
G797846 NA non-coding downstream 286168 35208631 ~ 35208896 (-)
G797809 NA non-coding downstream 309760 35184859 ~ 35185304 (-)
G798325 NA non-coding upstream 61675 35583559 ~ 35583881 (-)
G798340 NA non-coding upstream 78919 35600803 ~ 35601047 (-)
G798344 NA non-coding upstream 81549 35603433 ~ 35603650 (-)
G798744 NA non-coding upstream 148027 35669911 ~ 35712373 (-)
G798836 NA non-coding upstream 291508 35813392 ~ 35813652 (-)
G798195 NA other downstream 140389 35354219 ~ 35354675 (-)
G797605 NA other downstream 619185 34869955 ~ 34875879 (-)
G796733 rl32 other downstream 1437515 34051059 ~ 34057549 (-)
G794311 LOC106577443 other downstream 3466796 32026071 ~ 32028445 (-)
LOC110531979 brpf1 other upstream 455538 35948544 ~ 35979307 (-)
G798993 NA other upstream 628454 36150338 ~ 36150637 (-)
LOC110531982 LOC106571893 other upstream 1306012 36827882 ~ 36907700 (-)
G800318 NA other upstream 1822511 37344395 ~ 37345147 (-)
LOC110532015 LOC106566767 other upstream 3319325 38839265 ~ 38841685 (-)

Expression


Co-expression Network