LOC110531971 (LOC106571873)


Basic Information

Item Value
gene id LOC110531971
gene name LOC106571873
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 35544777 ~ 35551977 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615518.2
gatacccggatgttTGATGTACtcgaacaagactggttactcgcatcaatgcctcggtctcgtcatttaacattcaaGCAAATTGTTTCTGCTCAGCGGGAATGAATTTGAAACCGTACAATATTGCGGACCAAAACGGAACCATGGACAGAATGTGTTGACACTGTCGTCTTCAAGTTTTACCGGTCTGCAGAGTGAAAGCATCACACAACACCCACCAACAACCTGGATAGTTATCCGCTAGCAGATCAACTGAGGTTCAAGCAAGAGATGCAAGAGACAACGAGGAAGTAAAACATGAGAAAAGCAAACAATTCAGAGTTATAAAGCTGGACTGAGAGAAGAccagaggataaagagagagagaaggggtgagttTTTGCGCTGCAGTGTGGAGGTTGGAGGGAGGTCATGGTGTGGCAGGGGCTGTGGGTGTTTAAGCCCCGCTTTGGGAAGCGTGGGGGCCGGTTCGGAGTGGtgcctgctctctgtctgctgaTAGTCAGTGCTGCCCTGCTAGCTCTACTCTTCATTGACTCCATTGAGTCATGGGCCACATACATGAATATGAACACAATGGTAGAGGCACAGGGGGGGATCATACCCCCTCAGAGTGTCCCCCCAACCAGACCCGAGGAGTACCTCCTTATGCCCAGCCCTCATGTCTGCCAGCATGCCAAGCCCTACCTCATCACCATGGTGACCTCCGCCCCAGCCAATCAGAGGGCCCGCCAGGCCATCCGGGACACGTGGGGTGGGGAGGTGGAGGTCAGGGGTCATAGGGTCATGACCTTGTTCATGCTCGGGGTGGCCTCTGACCCCGGGCTAGCCAAACTGCTGATAGATGAGTCCTGGGAAAGAGGGGACCTGATTCAAGGGCGTTTCTGGGAGTCCTACTCCAACCTGACTCTGAAGACGCTATCGATGCTGAGCTGGGCCCAACGCTTCTGCCCCCAGGCCCACTTCCTGGCCAAGGTGGACGATGACGTCCTGTTCAACCCTGGAGCCCTTCTGCTCTACCTGAACAGCACCTACGAGCACGGGGACCTGTACCTGGGCCGGCTCCACCAAAACGTGGCTCCAGACCGAGACCCAGGCAGTAAGCACTACCTCCCTAGAGGGGcgtaccctgcctctgtcttccCCGACTACTGCAGCGGCACTGCCTACATCCTGTCCCGCTCCGCCTTGCTCAAGATCTCCCTGATGGCCGCTGCCTCGCCTCCGTCCACTCCTCTGCCCCCCGAGGACGTGTTTGTGGGACTGTGTGCCCGTGAGGCTGGAATGCTGCCCTCCCACTGCCCACTGTTCTCTGGTGGGCCTGTGGTGCCTTACGGGCGCTGCTGCTACCAGGCCATGGTGTCCATCCATCACATCTCCCCCAGCGAGATGCTCCGGTTCTGGGCTGACGtccactcccctccctcctgcTCCTGGTTGGGTATGCGTGCCTCCCTGGGGGTCTGTAAAGTCCGGGCCATGCTGGGGACCTTTCTGGGGGTGGAGCAGGGGCTATGAGAGTGTTATTGCCATTGTGGATAGAAAATACTATTGCGTTATGGGGGGCTGTTTCTCTGCCAGTATTTCAATACTGTGAATAGCACAAGTGGCAAGCACTCTATTTCATTAGCTATGATGAGGAATCACTGTGCAGTGTGAAAATGTACTTTTATTTTTATAGACTTTTAGGAacactttaaatgtattttatggtGATGATTATTACGCTAGCATTTTGTAAAAGCTGAAGCTATATGAATCCGTTGATTTATTAGTGTGAATATATTTTTAAGACTGTtaaaacacacactacacagacattAACTGTAGATATGAAAATATTACTGACCAGGAAACATAACATACAGGATATCCTAATGTCAGTGTTTCACCTATATTAATTCCGCAGTGTTTGATATTTCCTTTACATTGTACTATCCAGTACAACAATGAAACATTTAAAAATCAAATGTAAATGCTTAAATGACAAATAATTTCTCACGTTTGTCATTTCATTTGCTTGTTGTGATAGCATGAATTGTGACAAATTACATCAATTGGCAATTGACAATGCTTTTCCATACTCCCTCCAGCATGTGGCATTTTTTCATTGTTTCGCCCAACAAGCAAGGAGTTTTTCTATGGAGGTCAATGAGGGGGTGTCGAATTTGgttaacaaaaaaatgtatggattatttgctgcatgaggtttatttgatcgaatagaagtttcgtaatgatTATGTTGATACGAGtctactgatataagtaggacacatgacatcccggcaactttgagaaaaaacatgTTAAATCGGAGTTGTCTCTagatggctatgcatattcatggcaTGAGGCTAGTACCATAGCTTCTCTCCACTGAATATAGGCGGTTGCGGGCGGTTGTCAACATCCCTCATCGGATATTCAAAAAAGGATTACAATAATGAgctgtatccaccaatccaaagaaaggataggcgGGAGCTAGACAGCCCGCCATGCCGCTTTGTGggcaacgactcccattgttagggtggaaagacatgtacagtgccttgcgaagtattaacttaagggggctgataaattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatctggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtatcttgtcAGTATACGGTATCTATAATATTTGGTATTGCTAGCATGCCCAGGCAACCTCTTCCGCCTCACATTACCAAAACACCGCCAACCGTGTTTGATTGACAGGTCTAACACATTGAAAAGGCAAAGGAGCAATGAGGAAACTATATAACATTTGAATTTTGACAGTCTTAAACCACAGAGTTTTGGAAAATAATTGTCAATTGTAACTGAGAAAGCATGAATTGTGACAAAAAGAAAATGCAGTCACAACAAGCAAAAACATGAGAAATAGTTTGTCATTTAAGCATTTAAATGTTGTTTTTAAATATGTCAGTGTTGTACTGGATAGTACCATGGAATTTAAATATGTGACTAGTTTCAGGaaactacttcacaggagaggcatttcaatataataaaaaataaaaaaaataaaaaaacattttttgggcagaaatgccttctggaacatgtgaactttcata
>XM_021615519.2
gatacccggatgttTGATGTACtcgaacaagactggttactcgcatcaatgcctcggtctcgtcatttaacattcaaGCAAATTGTTTCTGCTCAGCGGGAATGAATTTGAAACCGTACAATATTGCGGACCAAAACGGAACCATGGACAGAATGTGTTGACACTGTCGTCTTCAAGAGTGAAAGCATCACACAACACCCACCAACAACCTGGATAGTTATCCGCTAGCAGATCAACTGAGGTTCAAGCAAGAGATGCAAGAGACAACGAGGAAGTAAAACATGAGAAAAGCAAACAATTCAGAGTTATAAAGCTGGACTGAGAGAAGAccagaggataaagagagagagaaggggtgagttTTTGCGCTGCAGTGTGGAGGTTGGAGGGAGGTCATGGTGTGGCAGGGGCTGTGGGTGTTTAAGCCCCGCTTTGGGAAGCGTGGGGGCCGGTTCGGAGTGGtgcctgctctctgtctgctgaTAGTCAGTGCTGCCCTGCTAGCTCTACTCTTCATTGACTCCATTGAGTCATGGGCCACATACATGAATATGAACACAATGGTAGAGGCACAGGGGGGGATCATACCCCCTCAGAGTGTCCCCCCAACCAGACCCGAGGAGTACCTCCTTATGCCCAGCCCTCATGTCTGCCAGCATGCCAAGCCCTACCTCATCACCATGGTGACCTCCGCCCCAGCCAATCAGAGGGCCCGCCAGGCCATCCGGGACACGTGGGGTGGGGAGGTGGAGGTCAGGGGTCATAGGGTCATGACCTTGTTCATGCTCGGGGTGGCCTCTGACCCCGGGCTAGCCAAACTGCTGATAGATGAGTCCTGGGAAAGAGGGGACCTGATTCAAGGGCGTTTCTGGGAGTCCTACTCCAACCTGACTCTGAAGACGCTATCGATGCTGAGCTGGGCCCAACGCTTCTGCCCCCAGGCCCACTTCCTGGCCAAGGTGGACGATGACGTCCTGTTCAACCCTGGAGCCCTTCTGCTCTACCTGAACAGCACCTACGAGCACGGGGACCTGTACCTGGGCCGGCTCCACCAAAACGTGGCTCCAGACCGAGACCCAGGCAGTAAGCACTACCTCCCTAGAGGGGcgtaccctgcctctgtcttccCCGACTACTGCAGCGGCACTGCCTACATCCTGTCCCGCTCCGCCTTGCTCAAGATCTCCCTGATGGCCGCTGCCTCGCCTCCGTCCACTCCTCTGCCCCCCGAGGACGTGTTTGTGGGACTGTGTGCCCGTGAGGCTGGAATGCTGCCCTCCCACTGCCCACTGTTCTCTGGTGGGCCTGTGGTGCCTTACGGGCGCTGCTGCTACCAGGCCATGGTGTCCATCCATCACATCTCCCCCAGCGAGATGCTCCGGTTCTGGGCTGACGtccactcccctccctcctgcTCCTGGTTGGGTATGCGTGCCTCCCTGGGGGTCTGTAAAGTCCGGGCCATGCTGGGGACCTTTCTGGGGGTGGAGCAGGGGCTATGAGAGTGTTATTGCCATTGTGGATAGAAAATACTATTGCGTTATGGGGGGCTGTTTCTCTGCCAGTATTTCAATACTGTGAATAGCACAAGTGGCAAGCACTCTATTTCATTAGCTATGATGAGGAATCACTGTGCAGTGTGAAAATGTACTTTTATTTTTATAGACTTTTAGGAacactttaaatgtattttatggtGATGATTATTACGCTAGCATTTTGTAAAAGCTGAAGCTATATGAATCCGTTGATTTATTAGTGTGAATATATTTTTAAGACTGTtaaaacacacactacacagacattAACTGTAGATATGAAAATATTACTGACCAGGAAACATAACATACAGGATATCCTAATGTCAGTGTTTCACCTATATTAATTCCGCAGTGTTTGATATTTCCTTTACATTGTACTATCCAGTACAACAATGAAACATTTAAAAATCAAATGTAAATGCTTAAATGACAAATAATTTCTCACGTTTGTCATTTCATTTGCTTGTTGTGATAGCATGAATTGTGACAAATTACATCAATTGGCAATTGACAATGCTTTTCCATACTCCCTCCAGCATGTGGCATTTTTTCATTGTTTCGCCCAACAAGCAAGGAGTTTTTCTATGGAGGTCAATGAGGGGGTGTCGAATTTGgttaacaaaaaaatgtatggattatttgctgcatgaggtttatttgatcgaatagaagtttcgtaatgatTATGTTGATACGAGtctactgatataagtaggacacatgacatcccggcaactttgagaaaaaacatgTTAAATCGGAGTTGTCTCTagatggctatgcatattcatggcaTGAGGCTAGTACCATAGCTTCTCTCCACTGAATATAGGCGGTTGCGGGCGGTTGTCAACATCCCTCATCGGATATTCAAAAAAGGATTACAATAATGAgctgtatccaccaatccaaagaaaggataggcgGGAGCTAGACAGCCCGCCATGCCGCTTTGTGggcaacgactcccattgttagggtggaaagacatgtacagtgccttgcgaagtattaacttaagggggctgataaattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatctggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtatcttgtcAGTATACGGTATCTATAATATTTGGTATTGCTAGCATGCCCAGGCAACCTCTTCCGCCTCACATTACCAAAACACCGCCAACCGTGTTTGATTGACAGGTCTAACACATTGAAAAGGCAAAGGAGCAATGAGGAAACTATATAACATTTGAATTTTGACAGTCTTAAACCACAGAGTTTTGGAAAATAATTGTCAATTGTAACTGAGAAAGCATGAATTGTGACAAAAAGAAAATGCAGTCACAACAAGCAAAAACATGAGAAATAGTTTGTCATTTAAGCATTTAAATGTTGTTTTTAAATATGTCAGTGTTGTACTGGATAGTACCATGGAATTTAAATATGTGACTAGTTTCAGGaaactacttcacaggagaggcatttcaatataataaaaaataaaaaaaataaaaaaacattttttgggcagaaatgccttctggaacatgtgaactttcata
>TU908272
ctcgtcatttaacattcaaGCAAATTGTTTCTGCTCAGCGGGAATGAATTTGAAACCGTACAATATTGCGGACCAAAACGGAACCATGGACAGAATGTGTTGACACTGTCGTCTTCAAGAGTGAAAGCATCACACAACACCCACCAACAACCTGGATAGTTATCCGCTAGCAGATCAACTGAGGTTCAAGCAAGAGATGCAAGAGACAACGAGGAAGTAAAACATGAGAAAAGCAAACAATTCAGAGTTATAAAGCTGGACTGAGAGAAGAccagaggataaagagagagagaaggggtgagttTTTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615518.2 False 3260 mRNA 0.46 2 35544777 35551977
XM_021615519.2 False 3244 mRNA 0.46 2 35544777 35551977
TU908272 True 309 lncRNA 0.43 2 35544835 35549100

Neighbor

gene id symbol gene type direction distance location
LOC110531969 LOC106571870 coding upstream 48639 35487368 ~ 35496138 (+)
LOC110531968 LOC106571869 coding upstream 75281 35421565 ~ 35469496 (+)
LOC110531967 NA coding upstream 141228 35399679 ~ 35403549 (+)
LOC110531964 LOC106571867 coding upstream 184099 35215871 ~ 35360678 (+)
LOC110531155 LOC106571865 coding upstream 440395 34946140 ~ 35104382 (+)
LOC110531972 LOC106566626 coding downstream 114445 35666422 ~ 35744420 (+)
LOC110531973 LOC106571875 coding downstream 200035 35752012 ~ 35856104 (+)
LOC110531975 LOC106571876 coding downstream 333956 35885933 ~ 35893410 (+)
LOC110531941 LOC106580207 coding downstream 697367 36249344 ~ 36262924 (+)
si:dkey-7l6.3 LOC106580210 coding downstream 834941 36386918 ~ 36396094 (+)
G798006 NA non-coding upstream 57597 35456469 ~ 35487180 (+)
G798001 NA non-coding upstream 92208 35446049 ~ 35452569 (+)
G798000 NA non-coding upstream 95744 35442592 ~ 35449033 (+)
G797844 NA non-coding upstream 336374 35208116 ~ 35208403 (+)
G798100 NA non-coding downstream 43184 35595161 ~ 35595478 (+)
G798101 NA non-coding downstream 43548 35595525 ~ 35596107 (+)
G798107 NA non-coding downstream 51612 35603589 ~ 35603874 (+)
G798382 NA non-coding downstream 80205 35632182 ~ 35632413 (+)
G798383 NA non-coding downstream 80556 35632533 ~ 35632745 (+)
G797932 pphln other upstream 172629 35364988 ~ 35372148 (+)
G797056 NA other upstream 988155 34555931 ~ 34556622 (+)
G796495 LOC106613263 other upstream 1423037 34121422 ~ 34121740 (+)
G794886 LOC106577459 other upstream 2957389 32583606 ~ 32587388 (+)
G794893 NA other upstream 3042028 32502396 ~ 32502749 (+)
G799053 NA other downstream 761152 36313129 ~ 36316805 (+)
G799578 LOC106571900 other downstream 1482441 37034418 ~ 37035918 (+)
G799858 LOC106571908 other downstream 2015268 37567245 ~ 37570411 (+)
G800834 NA other downstream 2518239 38070216 ~ 38071433 (+)
G801778 NA other downstream 3236084 38788061 ~ 38788354 (+)

Expression


Co-expression Network