Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110531156 |
| gene name | wdr46 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048573.1 |
| NCBI id | CM023227.2 |
| chromosome length | 79455637 |
| location | 35556867 ~ 35562538 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| wdr46 | Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in nucleus. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; midbrain; and segmental plate. Orthologous to human WDR46 (WD repeat domain 46). |
| description |
|---|
| WD repeat-containing protein 46 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC110531156 | True | 1331 | mRNA | 0.50 | 9 | 35556867 | 35562538 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118966032 | LOC106571870 | coding | downstream | 34983 | 35492026 ~ 35521884 (-) |
| LOC110531966 | LOC106571884 | coding | downstream | 157309 | 35381661 ~ 35400349 (-) |
| LOC110531965 | pphln | coding | downstream | 184408 | 35364052 ~ 35372459 (-) |
| LOC110531962 | LOC106571888 | coding | downstream | 754033 | 34729334 ~ 34802834 (-) |
| LOC110533011 | LOC106571887 | coding | downstream | 835551 | 34715740 ~ 34721316 (-) |
| LOC118936388 | LOC106571889 | coding | upstream | 1723 | 35564261 ~ 35566271 (-) |
| LOC110531974 | LOC100136369 | coding | upstream | 293570 | 35856108 ~ 35859824 (-) |
| LOC118936413 | NA | coding | upstream | 298107 | 35860645 ~ 35869013 (-) |
| LOC118966034 | NA | coding | upstream | 311616 | 35874154 ~ 35879299 (-) |
| LOC110531976 | NA | coding | upstream | 316759 | 35879297 ~ 35886033 (-) |
| G798248 | NA | non-coding | downstream | 109935 | 35440281 ~ 35446932 (-) |
| G798223 | NA | non-coding | downstream | 149303 | 35406845 ~ 35407564 (-) |
| G797846 | NA | non-coding | downstream | 347971 | 35208631 ~ 35208896 (-) |
| G797809 | NA | non-coding | downstream | 371563 | 35184859 ~ 35185304 (-) |
| G798325 | NA | non-coding | upstream | 21021 | 35583559 ~ 35583881 (-) |
| G798340 | NA | non-coding | upstream | 38265 | 35600803 ~ 35601047 (-) |
| G798344 | NA | non-coding | upstream | 40895 | 35603433 ~ 35603650 (-) |
| G798744 | NA | non-coding | upstream | 107373 | 35669911 ~ 35712373 (-) |
| G798836 | NA | non-coding | upstream | 250854 | 35813392 ~ 35813652 (-) |
| G798195 | NA | other | downstream | 202192 | 35354219 ~ 35354675 (-) |
| G797605 | NA | other | downstream | 680988 | 34869955 ~ 34875879 (-) |
| G796733 | rl32 | other | downstream | 1499318 | 34051059 ~ 34057549 (-) |
| LOC110531979 | brpf1 | other | upstream | 414884 | 35948544 ~ 35979307 (-) |
| G798993 | NA | other | upstream | 587800 | 36150338 ~ 36150637 (-) |
| LOC110531982 | LOC106571893 | other | upstream | 1265358 | 36827882 ~ 36907700 (-) |
| G800318 | NA | other | upstream | 1781857 | 37344395 ~ 37345147 (-) |
| LOC110532015 | LOC106566767 | other | upstream | 3278671 | 38839265 ~ 38841685 (-) |
