LOC110531974 (LOC100136369)


Basic Information

Item Value
gene id LOC110531974
gene name LOC100136369
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 35856108 ~ 35859824 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615523.2
ACGAGGTTATGACGATCATTATAGTCCGTAACAAAAGTGCGTCTTTAGCCGATCAACCCAATAGGATTAACAGGATCAGATTACACAGAGCCTCTCACACAGATTTACACCAACAGGGAATGTAGACCGTCCATGAAATAACTGTCTGGAACATGATATATagaaaaatgtttgacatgtcgGTCTGCACTAGCAGACTGGTACAGTAGCCTCTTGACATCTAGGATAATGTAAATCTCTGATGACACCATGtttcctagtgcactactttttgccAGAGTCATATGTGCTATTTGAGAAGAAGTCTATAAATTGCATTGGTCTTCGTCAGCCTCCTGTAGTAACACTCTCTCCTTAGCAAACTTGTTTATGACACACTTGTGATGATGAAATCATCATAGGATAACCCtcgagtatacagtatatgtccTAGATGTTTTTCTCAtgaattactgtgtgtgtgtgtgtgtgtcctaaatCTGCCTATGCTGACACCATGCTGAGTTCCATGCACGTCCCTAATCCTAAGAGAGAAGCTCTTAAAAGGGTCTGTGCCCGCCTCGGGGGGGGGGCAGAGCACACCACTTCTCATCACTAGGATCTAtttcctccatctatctatccaacCTTCCAGCTAGAAATAGCTCCTCTCGTAGAAGGCATAGtgctttctctttcctctctccaaataccagagaggatagagaaagaCACAAACTCCTGTAGAGACACAtagacaaacagaaacacacacacacaccccaacagcCGTCGCCATGAATGGCACAGAGGGCCCAAACTTCTACGTGCCCATGTCTAACAAGACAGGGGTGGTGAGGAGCCCCTTTGAGCACCCTCAGTACTACCTAGCTCCACCCTGGAAGTACTCGCTCCTCGCTGCCTACATGATCTTTCTCATCATAACAGCCTTCCCCGTCAACTTCCTTACGCTCTATGTCACGGTGCAGCACAAGAAGCTACGGACCCCCTTGAACTACATCCTGTTGAATCTGGCTGTGGCTGACCTCTTCATGGTGGTGGGAGGCTTCACTGTGACTCTGGCAACAGCCCTACAGGGATACTTCTTCCTGGGGGTCACCGGCTGTAACATTGAAGGATTCTTTGCCACTATGGGAGGGGAGATCGCCCTTTGGTCTCTGGTGGTATTGGCCATCGAGCGCTATATCGTGGTGTGTAAACCAATGACCAACTTCCGCTTCAATGAGAGGCACGCCATTGTGGGCGTGGCCTTCACCTGGATCATGTCTCTCACCTGTGCTCTACCTCCATTGTGTGGCTGGTCCAGGTACATCCCAGAGGGCATGCAGTGTTCCTGTGGGATTGACTACTACACCCCGACGCCTGAGCTGGGAAACACCTCCTTTGTCATCTACATGTTCACCCtccacttctccatccctctggTCATCATCGGCTTCTGCTACGGCCGTCTGCTCTGCACCGTCCGCGCGGCGGCAGCCCTGCAGCAGGAGTCAGAGACCACTCAGAGGGCAGAGAAAGAAGTGACCCGTATGGTGATCGTCATGGTCATCTCGTATCTGGTGTGCTGGATGCCCTATGCCACTGTGGCCTGGTACATCTTTGCCAATCAGGGCACCAACTTTGGCCCTGTCATGATGACCATCCCAGCCTTCTTTGCCAAGAGTGCTGCCCTCTACAACCCAATAATCTACATTCtactcaacagacagttCAGGAACTGCATGTTGACCATAGTGTGTTGCGGGAAGAACCCATTCGGTGAGGAGGAGACCTCCACCGCCTCCTCCAAAACACAGGCCTCCTCCATCTCCGCCAGCCAGGTGGCTCCTGCCTGACCTACGACCCATAAAGCCTGACTCCTTACCTGTCCCAGCCCATCTGTGGACCCACCGCCAAGCAGCAGCCTCCGATAGGCCAATTTTCTCGATTTACCTCTGTCTGCACTGCATGGGTGTGCCTGTTGTACCTGTACATATATCCCTCAATGTGACCAAAGCATAACAAACCAAGAAACAGTGCTTAGTTGGCTTCATCAATCGTTTACTGGAGTTGGTAGAAGTTGCCTCAAACCACTGATAAAGAGTCAGATTATTTTACTCCCCTTATGGTTAGGAATAGGGGTTGCATTGTCTGATATCAGGTCTGTGGTTAGTGCATCTTGACTTCTACCTCAAGCACTTTAAGCAGCACCTTTGGGTGTCATTTTGGTGGCTGTCCAACTAAACACGTTCCATGGGCTCCCCTCCCATTAAAACACATACAATAATTTAGTGTTGAAGTGAAACCTTCAAATGccacaatataaaaaaaaacgTATGGCAACTTTTGTTTACATAATTGTTCAGCTTATGCCCCTTAAATACACTTTAAAGTatccattttttaaattaatactTAGGGTAAAATACGTTTTAAATTGGTTTAGATTGTGCCTACCATAAAGCATTGAGGAGAGCTCTCCCCTGGTTTCGGTGTCTTTCCCATGATGAGGCTGAACGGGTTAGTTCTTAACACTTGGCTCGGAAAAGGTCCTGAATGTAAACAAATGGACCTGCATAGAACCTCTGCAGAAAGAAGACACCtcctgagagtgtgtgtgttagtgtgcgtgtgtgtatgcgtgtatgtTTAAAAGCTCTGGAGACAGGACTAGTGTTAATAATGTAAAGATTAGGATGTTGTACGTGACGTGGAAATAAAGTTGTTAAATGTCCTGGAATTAAAATGACGATAAAAATATGA

Function

NR:

description
rhodopsin-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04250 RHO, OPN2; rhodopsin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615523.2 True 2745 mRNA 0.47 5 35856108 35859824

Neighbor

gene id symbol gene type direction distance location
LOC118936388 LOC106571889 coding downstream 289837 35564261 ~ 35566271 (-)
LOC110531156 wdr46 coding downstream 293570 35556867 ~ 35562538 (-)
LOC118966032 LOC106571870 coding downstream 334224 35492026 ~ 35521884 (-)
LOC110531966 LOC106571884 coding downstream 456550 35381661 ~ 35400349 (-)
LOC110531965 pphln coding downstream 483649 35364052 ~ 35372459 (-)
LOC118936413 NA coding upstream 821 35860645 ~ 35869013 (-)
LOC118966034 NA coding upstream 14330 35874154 ~ 35879299 (-)
LOC110531976 NA coding upstream 19473 35879297 ~ 35886033 (-)
LOC110531977 LOC106571877 coding upstream 36605 35896429 ~ 35904384 (-)
LOC118966036 NA coding upstream 51701 35911525 ~ 35913838 (-)
G798844 LOC106571875 non-coding downstream 30376 35821519 ~ 35825732 (-)
G798836 NA non-coding downstream 42456 35813392 ~ 35813652 (-)
G798744 NA non-coding downstream 143735 35669911 ~ 35712373 (-)
G798344 NA non-coding downstream 252458 35603433 ~ 35603650 (-)
G798340 NA non-coding downstream 255061 35600803 ~ 35601047 (-)
G798883 NA non-coding upstream 54373 35914197 ~ 35914434 (-)
G798890 NA non-coding upstream 71440 35931264 ~ 35932005 (-)
G798901 NA non-coding upstream 99260 35959084 ~ 35961739 (-)
G798902 NA non-coding upstream 100054 35959878 ~ 35967217 (-)
G798906 NA non-coding upstream 108263 35968087 ~ 35969282 (-)
G798195 NA other downstream 501433 35354219 ~ 35354675 (-)
G797605 NA other downstream 980229 34869955 ~ 34875879 (-)
G796733 rl32 other downstream 1798559 34051059 ~ 34057549 (-)
LOC110531979 brpf1 other upstream 117598 35948544 ~ 35979307 (-)
G798993 NA other upstream 290514 36150338 ~ 36150637 (-)
LOC110531982 LOC106571893 other upstream 968072 36827882 ~ 36907700 (-)
G800318 NA other upstream 1484571 37344395 ~ 37345147 (-)
LOC110532015 LOC106566767 other upstream 2981385 38839265 ~ 38841685 (-)

Expression


Co-expression Network