LOC118936413


Basic Information

Item Value
gene id LOC118936413
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 35860645 ~ 35869013 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053232.1
tgttatagcagcaaaggggggaccaactccatatcaatgcccatgattttggagatgttcgatgagcaggtgtccacatacttttggtcatctaGTGTATGTCTGATTATAAGCACCCTGTCCCTTTTAGGCTGGTATGCAGTGGCTTAACTATCCCTGGCCTGTGtcagtgtgctctctctctctctctctttgtttttacAGTACTCTACCCTGGTCACACCCCTGAAATAAGGAACCCCTGTGATTGAATCCAGAGCAGGAACCTTATAGATCTCACTTTAACTCTCCCGGCCAAAGGGCTTTGATGAGCCATCAAACACTGCGGGAGCTAGCTGGCGCTACACACTAATAAACACACCCTGCCTCTTAACCTAGCCCATGTGAGCAAAGTGCTCTGTGCTGTGAAGGGAGGATGTGGCGCAGCTCAGGCTATTCTTTATCTTCAGACTAGTGTTTAAGGcaagagagcgaggaagagaaaAGAAGTGGAgggcaagggagggagagaggagcaaaAGGGGCAGAGACGGAGTCGTGGTGCCTCTGTGTCCTTACAGAGATGCCCAAAGATGTGTGTATCTGATGGATGTTGTGtgccttctgtctctctctgccccctttcCCTGCCGCCCATccttacattttagtcatttagcagatgctcctaTCCCGAGCAATTTACAGTtattgcattcatcttaagaaagctaggtgggacaaccacataatAAGTCCAcctttcctcaataaagtagctatcagcaaagtcagagctagaaggggggggggtcaagtgcAAATGTGAGGAGGGGAATTATTtaaaatactctttgaagaggtagggtttcaggtgCTTTCGTGAGATGGAAGCTTCAGATGGAAGCTGGCTCTACCATTGGGGTGCCAGAAAAGAGATTGCACTGGGCTGAGCAGGAGCTGCCCTCCcttaggggtgggagggccaagagaccagaggtggcagaacggagtgctcggtTTGGGTTGTAGGGTTTgtgcatagcctgaaggtagggcggggcagttcctcttgctgctctgtaggtaagcatcatggtcttgtagtggaagtgctcttcgactggaagccagtggaggagcgggatgacatgggagaacttgaaAAGGTTGAAAACCAAGCGGGCTGCAGCactctggataagttgcaggggtttgatggggCGAGTTGCAGTACTCCAGACGGGACATGataagtgcctggattaggaactgcgccgcttcctgtgtgaggtagggtcgtactctacggatatTGTAGAGCATGACCTGCAGgagtgagtcactgctttgatgtttgcagagaacgattagggtgttgtccagggtcacgccaaggttctttgcactctagGAGGGAAACACTGTGGACTTTTCAATCATGATGGAGATGTCTTCCCCTGGAGGAAGAGTAGCTCCGTCTTGTCGAGCTTCCTGCTTCCTTTCCCGCCCTctatttccctcctctctcccttctcctctctccaggatGAACCCTTCAGCTCTCATATACCTGAGACGCTCTTTAACATCTCCAGGTACTTCCTGCACAACCTCACCAAGGATGTACCACTGGGCATTACTAAAGTTAACACTCTGTATGCGTTGGCTAAGCAGAGCAGAACCCCGGGAGAGTTTGAGCTGGCCAGACCCTCTCGCTTCCAGGAGACCATGGACCTGGGTAGCCTTACCGTCTGCTCCAAACCACTtcaaccagGTGTGTAACCCAGGACCTGATCTCCATGTGCGCTGCTCCACCAACAACCCCCTGCTGGACAGCCAGGGCAGTGTGTGTATCAACTGCAAACAGCCCTTGATCTACACGGCATCGTCATACGGTCCTACCTCTGTCGCAGTTCTACCTGGACGAGGGTATTGGTGATGAGGAGGCTGTGTCTGTCATTGCCCCGGAGGTCCCTCGCATCGACAGGAATGCCGCAGTAGGGGTATCCATTACCTTATGCAGTGTACACCACTAAAATCAACACATTTCTCATGACCACTTTTAGCTAATGGGAATAATCTGTATGTTAAGGTTGTGTGCTCGTACACGTttccatacatacacacattacatacagtatgtgtatgtgtcaGTGCTGAGGTGTGTGTTCTGAGAAGGTAGTAATCCAAGTATTTCTTGGCACTGATTTAATTTCTGCCGAGCAGCATAAGCTGTCAGGCCTAAGTCATCTTAGCGGTGAGAGTTAATAGGGTTAGAGGGAATCTTCTCTCTCAGTTTAATGACACTAACACCTCAGAGACCTCTCTGTCTGGGATTAACCTGCATTAGCCTGCCTGCCACAAGGGCACGGTGGCCACGGCTTTTCCTAGAAACTACATGCtgactaactcactgactgacctTTAGTAGTCTACTCTCTCCGTCACTCTTACTGGCTGAGCTCTGAGGGTGAAATGTTGTGCATTTCAGtgtctttgtttttctttggTGTTAAAATGCTCAAAGTGGTGGCATGGGTCTGTTAATGGTGTATGACTTAAATGTGTGTAAGAAAGCAGGGAGCAGAAGTATTGTGCACGTCTACGAGTGAGTCCTTAACGGTGTCAGAATCCCAGTCCCTGAAGCTGGATGATGGCACGGAAGACACAAAGGAGGACATCTTCATGGCCAAACTCAGTTTTGAGttgaggagggagggacagaaagagggaaggaTATGGAAAGTGAGGAGTGAGAGGGTGGTTAGaaaggtggaagagagggaggagggaaactAACAGGAGAGTATGAATGGAAAGACTCAGTTTCCCTTTACAGAAGGGTGGGTCTGACTATGTCCCAGTGGTGGTGAGTCGCTCTGTGCTGAGGTCTATGAGCAGCAGGGATGTCCTGCTCAAGCCCTGGCCTAAACCCCTTCAGTGAGAGTACTACCGCTCCTTACTGCCTGCTGTCAGCATCAATATGTGCCGCTTTTATGTTTAACTTATTTTTGTGTTTCGTGTTTTTTTTACCAGAAGTGTCTTTTACCAAATGTTGCTAGCGGTAGTGCTAGATGTTGTGTTGCTATCTATGGGAATCCCTCCTCTGCCTGGTGCTGTGTTCTCTGACCCATTCATCCTGTCTTCTCTGCTGTGTTTCCTCTAATCTAGATGTTCCACAGTGAAGACTATAAGCTGCCAGAGAGCTTCAGCTTAACTGCTCTCTCTACTGCTGACTGCCGATCGATGAACCCAACTGACCTCCGCAAACTGGTTTAGAATCACTTAATCCATCTCCCagtttattaatatattttatcaACATTTCTACTTGGTTATAATCCAGCCAGTAAATATTTATGTTCGATTGTATGCTGATCTGGAATCAGTTACATGGCTTTCATCGAAAGTCCAGTCTGATTGAAAAAGGagtttctctcttgctcttctgAGGAATATTCCGCCCATATGCTCACACccgatcagaaatacagtgtagacattgttaatgttgtaaatgactattgtacctggaaactgcagattttttaatggaatatctacataggcgtacagaggccgattatcagcaa

Function

NR:

description
intraflagellar transport protein 122 homolog isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053232.1 True 3575 mRNA 0.48 4 35860645 35869013

Neighbor

gene id symbol gene type direction distance location
LOC110531974 LOC100136369 coding downstream 821 35856108 ~ 35859824 (-)
LOC118936388 LOC106571889 coding downstream 294374 35564261 ~ 35566271 (-)
LOC110531156 wdr46 coding downstream 298107 35556867 ~ 35562538 (-)
LOC118966032 LOC106571870 coding downstream 338761 35492026 ~ 35521884 (-)
LOC110531966 LOC106571884 coding downstream 461087 35381661 ~ 35400349 (-)
LOC118966034 NA coding upstream 5141 35874154 ~ 35879299 (-)
LOC110531976 NA coding upstream 10284 35879297 ~ 35886033 (-)
LOC110531977 LOC106571877 coding upstream 27416 35896429 ~ 35904384 (-)
LOC118966036 NA coding upstream 42512 35911525 ~ 35913838 (-)
LOC118966037 NA coding upstream 46932 35915945 ~ 35918726 (-)
G798844 LOC106571875 non-coding downstream 34913 35821519 ~ 35825732 (-)
G798836 NA non-coding downstream 46993 35813392 ~ 35813652 (-)
G798744 NA non-coding downstream 148272 35669911 ~ 35712373 (-)
G798344 NA non-coding downstream 256995 35603433 ~ 35603650 (-)
G798340 NA non-coding downstream 259598 35600803 ~ 35601047 (-)
G798883 NA non-coding upstream 45184 35914197 ~ 35914434 (-)
G798890 NA non-coding upstream 62251 35931264 ~ 35932005 (-)
G798901 NA non-coding upstream 90071 35959084 ~ 35961739 (-)
G798902 NA non-coding upstream 90865 35959878 ~ 35967217 (-)
G798906 NA non-coding upstream 99074 35968087 ~ 35969282 (-)
G798195 NA other downstream 505970 35354219 ~ 35354675 (-)
G797605 NA other downstream 984766 34869955 ~ 34875879 (-)
G796733 rl32 other downstream 1803096 34051059 ~ 34057549 (-)
LOC110531979 brpf1 other upstream 108409 35948544 ~ 35979307 (-)
G798993 NA other upstream 281325 36150338 ~ 36150637 (-)
LOC110531982 LOC106571893 other upstream 958883 36827882 ~ 36907700 (-)
G800318 NA other upstream 1475382 37344395 ~ 37345147 (-)
LOC110532015 LOC106566767 other upstream 2972196 38839265 ~ 38841685 (-)

Expression


Co-expression Network