LOC110531978 (LOC106571879)


Basic Information

Item Value
gene id LOC110531978
gene name LOC106571879
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 35918737 ~ 35927713 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615531.2
GGCTGGAGAGGTGGAACTGTATGTTGTAAACTAGTCAGCGATTACGCACTCTCCCAAGACACAATTGAACTCGTAGGGAACTATTTGATCAGTTCTTAGGAACATACAAGAACAACATGGCACTGGAACATAACATGTTGGCCTATCTACTTTTCAGTTGTATTGAATTACATTTAATTTGTTTTGAAATGCACTCTGTAGTGTGAACATGTATGTGGACTATCGGCCCACTGGATTTTGCGTTAGTTGGCTGCCTGAGCGTTGTTCTAGCAACTTCGGATACAATGTGACTTTTCCAAGTGTCTCTGGTGTCAGTACTGATCAATGTTCATGATGAGTTGCGGAAATGAACCAGCACGTGCTGTGCTCCTGTTGTGTTTGCTGCTGCTCCTGCACGCGGCGGAGGAGAAACCACGCGCTAAACTAACTGTCACTGAGATTCAACACCATAATGGTTCCACCTGGAACTTGGAGAGTCTTCCCCAGCTGAGTCTGTCCACCTTCCGGTTCTCTCCATCACAAGGCTCCTGTTCTGCTTGTGTCCATGTCCGTGTCAGAATGAAAGCTGCAGACTTTACTGGGACACTGACTATTACCTACCTGGAGCTGTCAACTAGTACTCACAGAATCATCTCcatagaaaatgtaaaaaatcgCACTTTACAGTGGAGAGGCCCGCTTCCATTCAACGGAGGAAAGACCAAAATCAAACGTTTACGTCTTCATAATATTGGCCATCAAATTTTGTGGGAGTTGGTGTATGACTGTTTCCCGGCCGATGCAGGGCGACAAGTGTATGTGTCTTTGTCCTCCAAACCAAAGAGAGAAGACAGGTACATCGTACAAGACATCTGTCCAGATCCAGTGCCGGAGTTTGACCTGTTTGTTGATGAGCTGGCtcgatccctcactgtaactgtaGCCACTGGGGACCACATGTACCAGCCGGCTCTCTCACCTGAAGTGTACACCAGGCtgtgctacagacagacagactcagaatGCTCCAACCTTTCTCCTCTTACCACTATTGACACCAATCAGGCATTGTCAGTGACTCTCAGGTTCCCCTACCTGCTTCGCTGTGTCTGTGTACAGgtatattacacacacctggatgCAAGGCGAACCACAGTTTGCCCATTTGTGAACAGCTCATTAGGTGAGGGCAGAGATGTGTGGCGCTCCAGTTTTGTGACTCTGTATGGTGAGTTGGGTTCCGACCTGGCATGGAGTTCCCCGTGTCCTGCTGCTTACCTGaagctctctgcctccctctgctgGCAACACCAGAGAAACACATCCCACTGCATTCCCATCTTCAACTCCACACTGGAGGACATAGTGGAGAAGAGAGATCTGAAATATAATGTTTCTGCTGTGGATAAACACCCTCAGATGTGTGTGCAGttgTCCTTCAGAAGCAGTTTTGATGTCCACTGTCCATTCCTGCCAGgTATGTCTAAGTGGGAGGCATATGTTGGTCCTGGTTCACAGAGTCTCCGTGTCTATCTCACTTCCACTATCCCAGCATCCTTTGCTGCTCAACTCTGTGTATGGCAGGACAAGGGATGTGTGTCCAGAGGAGCTATCTACTTAGTAAACATGGGTGGGGGCACCAGAGAGACACAGCTAAACCTGCCCTTATCCTTCCTAACTGAGAGACTATGTGTGCAGGTGTGGCGGTCAGATCCTCCACAGTATGGGAGGAGAATACTCTGTCCTGActATTCCCACAGGAGATGGGGTCTCTATGCTGTTGCAGCCTTGACACTTCTGGTTATTGTGGCAATGCTGGGACGCCTCATATACTATGTGACCAAGAATGGAGTCACAGGTTGGCTGTTCATCCAGAGGCCTGTGTTGTTGGTGTGTTCCTCAGAGCTGTCAACCCATGTGTCTCCCGTGTGTGCTTTGGCCTCCATTCTACAGGGAGAGCTGTGTGCTGACGTGCGCATGGCTCTGTGGGCCCAGATCTCCAATGGGGATGGTCCTGGGGCTATGGAGAGGTCTGGGGCTGGTGTGGCTGAGCTGGGCCCTGTGCCCTGGATGTATGGACAGTGGGAGGCAGTCAGAGAGGCAGGAGGCCGGGTGCTGATCATATGGAGCCCAGAGGCTAAGGAGTCCTACAAGAGCTGGAGAGAAGAGCGAGATGGAGGGAATAGGAGAGATGAGAAAAAGATAGGagggagtaaaggagaggagatgcGACaaggggagagtggaggagaggagctgaAAGGACTTGAGTTAACAAGAGATATACAGGAGCAAGCAGGAATGGAGAAAGGAGTGGAATGGAAAGAGGAAGGTaggagcggagaggaggagagggagcccTCCTCAGTGACGGGGCCGGTGTTCAGGgctgccctgtcctgtctgcaGGGGGCACTACAGGGGACAGGCAAGAGCCACGGCTTTGCCCTTGTCTACTTCCAGGACCTCTGTCACAGCCGAGACATCCCCAAAGACCTCAGAGGTGTCCCGCGCTACTGCCTGCCTCGGGATTTTGGGGGACTGATACGAGAGCTGGGCGGGATGGCTAGAGGAAGGAACAATGTGATTGGCAGCTGGCACTGCTGGCTCAGACTCCTCTCCAAAACATTGTCGCTTTGGTTGGCACGACAACTAACTCACAAGGTGAGTTGCCACGGACGCACCCACAGGAAGAAGAGGGTCCAAAACTGAAATTGTCGCAGAAAGTGAGGTCAGAGAGGACACTAAGCAGGCATGTGTCGCCACTGTCAACCAATTAAGAGAGGACAGAGCCAAGCACTTTGCAGGAGGAGTCACTCAGCGGGCCACCGTGGTGATGAGGCAGGGCATCTCAGGTTTGACCTTTTATACAggcttttttttaat

Function

NR:

description
uncharacterized protein LOC110531978

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615531.2 True 2865 mRNA 0.51 17 35918737 35927713

Neighbor

gene id symbol gene type direction distance location
LOC118966037 NA coding downstream 11 35915945 ~ 35918726 (-)
LOC118966036 NA coding downstream 4899 35911525 ~ 35913838 (-)
LOC110531977 LOC106571877 coding downstream 14353 35896429 ~ 35904384 (-)
LOC110531976 NA coding downstream 32704 35879297 ~ 35886033 (-)
LOC118966034 NA coding downstream 39438 35874154 ~ 35879299 (-)
LOC110531979 brpf1 coding upstream 20831 35948544 ~ 35979307 (-)
LOC110531157 LOC106571792 coding upstream 53085 35980798 ~ 36110044 (-)
snap29 snap29 coding upstream 366725 36294438 ~ 36318652 (-)
LOC110531936 LOC106580204 coding upstream 407671 36335384 ~ 36369350 (-)
trnag-ucc-139 NA coding upstream 533093 36460806 ~ 36460877 (-)
G798883 NA non-coding downstream 4303 35914197 ~ 35914434 (-)
G798844 LOC106571875 non-coding downstream 93005 35821519 ~ 35825732 (-)
G798836 NA non-coding downstream 105085 35813392 ~ 35813652 (-)
G798744 NA non-coding downstream 206364 35669911 ~ 35712373 (-)
G798344 NA non-coding downstream 315087 35603433 ~ 35603650 (-)
G798890 NA non-coding upstream 3551 35931264 ~ 35932005 (-)
G798901 NA non-coding upstream 31371 35959084 ~ 35961739 (-)
G798902 NA non-coding upstream 32165 35959878 ~ 35967217 (-)
G798906 NA non-coding upstream 40374 35968087 ~ 35969282 (-)
G798976 NA non-coding upstream 191210 36118923 ~ 36145645 (-)
LOC118966032 LOC106571870 other downstream 397405 35492026 ~ 35521884 (-)
LOC110531966 LOC106571884 other downstream 531605 35381661 ~ 35400349 (-)
G798195 NA other downstream 564062 35354219 ~ 35354675 (-)
G797605 NA other downstream 1042858 34869955 ~ 34875879 (-)
G796733 rl32 other downstream 1861188 34051059 ~ 34057549 (-)
G798993 NA other upstream 222625 36150338 ~ 36150637 (-)
LOC110531982 LOC106571893 other upstream 900183 36827882 ~ 36907700 (-)
G800318 NA other upstream 1416682 37344395 ~ 37345147 (-)
LOC110532015 LOC106566767 other upstream 2913496 38839265 ~ 38841685 (-)

Expression


Co-expression Network