XLOC_026673 (ap5z1)


Basic Information

Item Value
gene id XLOC_026673
gene name ap5z1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 40876553 ~ 40896927 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051950
ATGTATGCAGCCGCGACGGAGAGTTTAATAAAGCAGGCAAGAGAAATAAAGGAGGAAGAGCTGCAGAGGTTTTGCGGGCGCGTTTATAAGCTGCTTCACAGTAAAGATGTTATTGGAGAGGCTGTGGATTCTCTTCAGAGGCTCCATTTGATTGTTTCTGCTACTAAATATGCCAGAGAGCTTCCCTCAGATCTGCTGATGAAGCTGCAGACACTTCTTCGATCTTCATCATGCCCAGAGCAGCTTCAATTTCTGTCGTCCTCCATCATCCGAGAGAGTTTTCCTCCCAGCGTGCACAGCCTCAGCTCAGACCTCAGTCAGGACAGCCGGATCTTCAGCTGTGTGGCCGCTGTTGTTCTCGCTCAGGCTGGAGGTAAAGAGGATGTGATGCCACTTTTCCATCACTTGATGAAAAGTTTTGAGTCTAGGCTGTCTGACGGCCAGATACCCAAACATGCACTTCCCATTCTCTCCAGTATGATTACTACCTATTCAGAGATTCTCACAGACGATCAGGTGAATCTGGTCAGCCGTAAGTTGGTGGATTGGTTGCGTTATGCCAGTATGCAGCAGGGAGCCTCCATGTCTTCAGGGGGATTTTTCAGTGCACCAAGAACCCGTCAGCCAGCTCCACTCACAGAGGTGGACGGAGTGGTGACGGGGGATTTCTTCACTGTGCTGTGTGTGGGTCAGAGCTACACTGAAGACCAGTGGATGAACATGTACGCGTTCTCCATGATCAAGAGCTGGCTGCTCACTTACGACACAGAGGGGACGACAAACACAGAATCAGATGATCGCTCTGAGGTGGACAGTTCGGTGATGTCCATGGTGTCGGCCACATCTTCCTCCAGCAGACTCCTTCCTCCCAAAGAGAGACTCAGAGAGAAGGCTTTCGAGTACTGTCAGCGTCTCATTGAACAGAGTGACCGCAAAGCTCTAAAGCGGACGGATACTGAGCTACAGAAAGCTTGTATTGTTGAGTCTGTATCAATAATGGATATCATCTGTGGTGAGGATCCTTCATATGTGTACCGTGCCTTTCCCTGCATCAAAGCGCTGTATGGCAGGCTGAATGGAGACTTTGCCTATGCTCGAACCCTGCTACCTATCGCTCAGTTCTACCTCAACCACAGTGAGACGGCCGCGGTGGACTCTGAAGCTGTTTTCTGCCAACTCTTCGGCCACTGTCCCGCTGAGCAGTTCAACGAGCCCATGCTCGCATTTGAGTTTGTCCAGTTCTGCCTTCTCAATTCCAGCGTTCTGCAGGACAGAGTGGCCAACTACCGCCAGAGCTTTCCAAACCTCCTAAAGTTCTTGGCGTGGAACAGCTCAGGACTGATTGCAGAGTTTGTGGAGCTGCTACCATCACTGGTAGCTCCAGATACAGCCATCGAGTTACTGCACACCATCCTGGATCTGCCCTGTTTAGCAGCGGCTCTGGACCTCCAGCAGAGATCGTCGTGCTATCAGGCTTCAGACCGTACAACATGGGACCAGCAGGGGGCGAAAGTGGCAGCTTGTTTGGAGGCTTTCCGCCAGCCGTCCTATAGGGGGCTCTTCCTCTACATCCTCAGGCCTGAGGCTGGCACTGGAGACACAATAGACAGGCTAAAAGAGCTTCATCAGATTCTGGCTGATATGGCAGAGTGTCCGCGGGTGGTTCAGTGTGCTCAGATTGTTCCTGTGCTTCTGCATGTCTACTTCAACACAGTAACAGAGAAagctgatgagaagatgatgaacCAGCTGCTTCTGGTGTTACTGGAGAGATGCAGCCTGCTCTACAACATCAAAACATTTCATGTAGAGGTCCAAAGGGCGTTCAGCACTCACCTGCAGGCCCTGTGCAAACACCACCCGCCACTGATTGTAGATCAGTCCAGGGAGATCCTAGAATTTGCAGGTTCCCCGACCAACATTTACAGTAAAGAAGACTTCTACACACATGTGGTGTGGGTTATTGGCGAGTATCTGTCAGTGTCTTATGACCCGCGCTGCAGGGTGGAACTGATCACCTCTTTCTTTGAGTGTTTGGAGGCTGTGCTATTCGAGATCACGCAGGTCCGACAGTCTGCCAGTCCACCCAGTTTCTCTCCACGCCTCATCACTGTGCTCATGACCACACTCGCTAAACTGGCCACACGCAGTCAGGATCTTATTCCCAGAGCCTCACTCTTCCTGTCTAAGATGCGGACGTTTGCGCGCAGTGCTCCAGTAACGGCCTGCTACAGCGAGGAGGACACTGAGGAGATCATCACACGAGCACATGAACTTATCAACCTGCTCAAGTTGCCCAATGTGGCTCAGTTTGTCCTGGCCCCTTCAGCCGGAGCCGACGGCCCTCGCTGGCACAGAGACACCAACGCCTCACTTCCACAGGCCATGAGGACAGTCAGCGGCCTCCTCCATAAACACTCCAGCTTCCTACCCGCATAA

Function

symbol description
ap5z1 Predicted to be part of AP-5 adaptor complex. Is expressed in female organism. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia and hereditary spastic paraplegia 48. Orthologous to human AP5Z1 (adaptor related protein complex 5 subunit zeta 1).

GO:

id name namespace
GO:0044599 AP-5 adaptor complex cellular_component

KEGG:

id description
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-120508-2 Predicted to be part of AP-5 adaptor complex. Is expressed in female organism. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia and hereditary spastic paraplegia 48. Orthologous to human AP5Z1 (adaptor related protein complex 5 subunit zeta 1).

Ensembl:

ensembl_id ENSDARG00000078111

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051950 True 2439 mRNA 0.52 17 40876553 40896927

Neighbor

gene id symbol gene type direction distance location
XLOC_026672 wipi2 coding downstream 39335 40821657 ~ 40837218 (-)
XLOC_026671 NA coding downstream 98830 40774418 ~ 40777723 (-)
XLOC_026670 smurf1 coding downstream 108005 40690212 ~ 40768548 (-)
XLOC_026669 uts2r5 coding downstream 195552 40679931 ~ 40681001 (-)
XLOC_026668 rnf216 coding downstream 211640 40600770 ~ 40664913 (-)
XLOC_026674 foxk1 coding upstream 4816 40901743 ~ 40933415 (-)
XLOC_026675 cyp3c4 coding upstream 39167 40936094 ~ 40945724 (-)
XLOC_026676 cyp3c3 coding upstream 51034 40947961 ~ 40955780 (-)
XLOC_026677 cyp3c3 coding upstream 61943 40958870 ~ 40965596 (-)
XLOC_026678 cyp3c1 coding upstream 72315 40969242 ~ 40976582 (-)
XLOC_026666 NA non-coding downstream 471167 40396063 ~ 40405386 (-)
XLOC_026659 NA non-coding downstream 694899 40180136 ~ 40181654 (-)
XLOC_026657 BX649547.1 non-coding downstream 787752 40088685 ~ 40088801 (-)
XLOC_026654 BX649356.3 non-coding downstream 919079 39957358 ~ 39957474 (-)
XLOC_026680 CR769786.1 non-coding upstream 415095 41312022 ~ 41312143 (-)
XLOC_026681 BX537310.2 non-coding upstream 499196 41396123 ~ 41512210 (-)
XLOC_026687 NA non-coding upstream 1286426 42183353 ~ 42205112 (-)
XLOC_026688 BX005183.3 non-coding upstream 1315783 42212710 ~ 42216013 (-)
XLOC_026689 NA non-coding upstream 1474857 42371784 ~ 42373599 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_03596032_03605678 AP5Z1 coding CI01000046 null 3595468 ~ 3605846 (+)