XLOC_026675 (cyp3c4)


Basic Information

Item Value
gene id XLOC_026675
gene name cyp3c4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 40936094 ~ 40945724 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051952
GTGTGCGTGAGGACTTATACTGAAGCTGAAGAATACAGTGATTTGCAATGATTGATCTTTCATCTCTGTCTGTGACCTGGACCCTGGTGGTTCTGGTCATAACCCTCCTGTTTATCTATGGAGTTTGGCCGCATCGTTTTTTCATCAAACTGGGAATACCAGGACCAAGACCTTGGCCTTTTGTTGGCACACTTCTCTCATATGCTAAAGGTTTGTGCAATTTTGATATGGAGTGTGCTAAGAAGTATGGAAAAGTTTGGGGGATCTATGATGGAAGGTTACCAATACTAATGGTCACTGACCTGGAAGTGATCAAAGTGGTTTTGGTGAAAGAATGTTACTCTAACTTCATTAACAGAAGGAAGAGGACGACAGGACTGGCTGGCCCCTTTTCCGATGGCATAATTATGGTTAAAGATGAAAGATGGAAGCGAATGCGCAGTACACTTTCTCCATATTTTACAAGTGGGCGGCTGAAGGAGATATTTCCCATAGCTATGACACATGCCGatcgttttattaaaaatatgcaaaagaAAGACCCCGAGCAGCCAGTTAAAATCAAAGAAGTTGTGGCTCCGTACAGTTTAGATGTCATCACCAGCTCATCTTTTAGCGTTGACATTGACTCCATAAACAACCCTGAAGATCCTTTCGTTATCAACGTCAAGAAGTTCATACAGTTCAATATGTTCAACCCTCTCCTATTGCTAATACTTTTGTTTCCTTCTCTTGCAATCCCTTTGAAGAAAATGGGGGTAACTCTTTTTTCAAAATCAGCCATGGATTTCTTCTACAGTGTTCTGAAAAAGATTAAGGATGATCACAACAAGGAATCAGAAGTAGACTTTCTCAAACTCATGCTGCAGAATCAAATACCTGATGATCAAATTCAGGACAGTGACACAAGTGAACAACCAGCGAAAGGACTAACAGACCATGAGATTCTCTCCCAGTCGCTCGTGTTTATCCTGGGTGGTTATGAGACTACAAGCACAACTCTAACTTTCCTTCTCTATAATCTTGCTACTAATCCAGACTGCCTGGAAAAGCTGGTGGAGGAGATCGACAAAAACTTCCCTCTTGATACTCCCATTACATACGATGCATTGATGAGAATGGATTACTTGGAAATGGCCATCAATGAATCAATGCGTCTCCTTCCTACGGCCCCACGTTTAGAAAGGTCCGCTAAGAAAACGGTGGTGATCAATGGCTTGACCATACCAGAAGGGACTCTTGTTGGAATTCCTACATATGTTTTAAGTCATGACCCGGATATCTGGGAGTCTCCTGGAGAGTTCAGGCCGGAGAGGTTCAGCCCGGAGAATAAGTCTGAGTTTCTCCAGTACGCTTTCATACCTTTTGGACTCGGGCCTCGAAACTGCATTGGAATGAGATATGCTGTTATGATCATGAAACTTTTTGTCGTGAAGCTGCTTCAGAACTTCAGTGTGGAAACATGTAAAGAGACACAGatccCTTTAGAAATTAATGTTACATTTCAACCGAAGGTTCCCATCACACTCAAGTTAATACCAAGATCTTGCAATAAAAAGCAATAATTCTGGTCAAAAACAGATATGTATAATAATGTTGTCATAACTGTGTTTGTCCacaagatgccactgtagttcgccagcaaccccagcggactacagtggctttagaactacatttccatacattctttcgcacacacacctggtctctcatctacactgatttacaaccacagctgtctccgttctctgtgattacctggactatatattcagtcattcatcctctgtttgtcagttgGTCGTTGTCATTGTTGGTATGTTGTTTCTGATCTTGATCTTGCTATTGTATCTTGTCTTAGTGTTAAAGTTTAGTCCAAGTTTAATCTGTttgagttgtttgtttgtttgtttattttgttaatttgttactttgatttttggattttgtCACTGTTGCTGCACTTTCACATTAAAgatctgcacttggattctacacccgtttttgttcctgtttcaatccTGAAACGTGACAAATGTATTATGTGTTATTTACATGATTATAATTGCATTTTAACATCTTTTATGTTCTTTTACGCCACTCATTTCACACACAATAATATACTTTATACTGTTTTAGaatcaaagaaatcagttatagATACAGACTACATCATGAATGTTTATAATTGTATCGTATTAAAGATGTTGAGTTTTTGTAATGAATCAAAAGACATGTTAGCATGCCATCAgattaatgcaaataaaatattccAATGTGTGAAATACA
>TCONS_00051953
aatgtaaCAGCGCGGTGTGCGTGAGGACTTATACTGAAGCTGAAGAATACAGTGATTTGCAATGATTGATCTTTCATCTCTGTCTGTGACCTGGACCCTGGTGGTTCTGGTCATAACCCTCCTGTTTATCTATGGAGTTTGGCCGCATCGTTTTTTCATCAAACTGGGAATACCAGGACCAAGACCTTGGCCTTTTGTTGGCACACTTCTCTCATATGCTAAAGGTTTGTGCAATTTTGATATGGAGTGTGCTAAGAAGTATGGAAAAGTTTGGGGGATCTATGATGGAAGGTTACCAATACTAATGGTCACTGACCTGGAAGTGATCAAAGTGGTTTTGGTGAAAGAATGTTACTCTAACTTCATTAACAGAAGGAAGAGGACGACAGGACTGGCTGGCCCCTTTTCCGATGGCATAATTATGGTTAAAGATGAAAGATGGAAGCGAATGCGCAGTACACTTTCTCCATATTTTACAAGTGGGCGGCTGAAGGAGATATTTCCCATAGCTATGACACATGCCGatcgttttattaaaaatatgcaaaagaAAGACCCCGAGCAGCCAGTTAAAATCAAAGAAGTTGTGGCTCCGTACAGTTTAGATGTCATCACCAGCTCATCTTTTAGCGTTGACATTGACTCCATAAACAACCCTGAAGATCCTTTCGTTATCAACGTCAAGAAGTTCATACAGTTCAATATGTTCAACCCTCTCCTATTGCTAATACTTTTGTTTCCTTCTCTTGCAATCCCTTTGAAGAAAATGGGGGTAACTCTTTTTTCAAAATCAGCCATGGATTTCTTCTACAGTGTTCTGAAAAAGATTAAGGATGATCACAACAAGGAATCAGAAGGTCGGGTAGACTTTCTCAAACTCATGCTGCAGAATCAAATACCTGATGATCAAATTCAGGACAGTGACACAAGTGAACAACCAGCGAAAGGACTAACAGACCATGAGATTCTCTCCCAGTCGCTCGTGTTTATCCTGGGTGGTTATGAGACTACAAGCACAACTCTAACTTTCCTTCTCTATAATCTTGCTACTAATCCAGACTGCCTGGAAAAGCTGGTGGAGGAGATCGACAAAAACTTCCCTCTTGATACTCCCATTACATACGATGCATTGATGAGAATGGATTACTTGGAAATGGCCATCAATGAATCAATGCGTCTCCTTCCTACGGCCCCACGTTTAGAAAGGTCCGCTAAGAAAACGGTGGTGATCAATGGCTTGACCATACCAGAAGGGACTCTTGTTGGAATTCCTACATATGTTTTAAGTCATGACCCGGATATCTGGGAGTCTCCTGGAGAGTTCAGGCCGGAGAGGTTCAGCCCGGAGAATAAGTCTGAGTTTCTCCAGTACGCTTTCATACCTTTTGGACTCGGGCCTCGAAACTGCATTGGAATGAGATATGCTGTTATGATCATGAAACTTTTTGTCGTGAAGCTGCTTCAGAACTTCAGTGTGGAAACATGTAAAGAGACACAGatccCTTTAGAAATTAATGTTACATTTCAACCGAAGGTTCCCATCACACTCAAGTTAATACCAAGATCTTGCAATAAAAAGCAATAATTCTGGTCAAAAACAGATATGTATAATAATGTTGTCATAACTGTGTTTGTCCacaagatgccactgtagttcgccagcaaccccagcggactacagtggctttagaactacatttccatacattctttcgcacacacacctggtctctcatctacactgatttacaaccacagctgtctccgttctctgtgattacctggactatatattcagtcattcatcctctgtttgtcagttgGTCGTTGTCATTGTTGGTATGTTGTTTCTGATCTTGATCTTGCTATTGTATCTTGTCTTAGTGTTAAAGTTTAGTCCAAGTTTAATCTGTttgagttgtttgtttgtttgtttattttgttaatttgttactttgatttttggattttgtCACTGTTGCTGCACTTTCACATTAAAgatctgcacttggattctacacccgtttttgttcctgtttcaatccTGAAACGTGACAAATGTATTATGTGTTATTTACATGATTATAATTGCATTTTAACATCTTTTATGTTCTTTTACGCCACTCATTTCACACACAATAATATACTTTATACTGTTTTAGaatcaaagaaatcagttatagATACAGACTACATCATGAATGTTTATAATTGTATCGTATTAAAGATGTTGAGTTTTTGTAATGAATCAAAAGACATGTTAGCATGCCATCAgattaatgcaaataaaatattccAATGTGTGAAAT

Function

symbol description
cyp3c4 Predicted to enable steroid hydroxylase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in gill; heart; liver; nervous system; and pleuroperitoneal region.

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008395 steroid hydroxylase activity molecular_function
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-96 Predicted to enable steroid hydroxylase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in gill; heart; liver; nervous system; and pleuroperitoneal region.

Ensembl:

ensembl_id ENSDARG00000070021

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051952 False 2292 mRNA 0.39 13 40936094 40945710
TCONS_00051953 True 2309 mRNA 0.39 13 40936097 40945724

Neighbor

gene id symbol gene type direction distance location
XLOC_026674 foxk1 coding downstream 2679 40901743 ~ 40933415 (-)
XLOC_026673 ap5z1 coding downstream 39167 40876553 ~ 40896927 (-)
XLOC_026672 wipi2 coding downstream 98876 40821657 ~ 40837218 (-)
XLOC_026671 NA coding downstream 158371 40774418 ~ 40777723 (-)
XLOC_026670 smurf1 coding downstream 167546 40690212 ~ 40768548 (-)
XLOC_026676 cyp3c3 coding upstream 2237 40947961 ~ 40955780 (-)
XLOC_026677 cyp3c3 coding upstream 13146 40958870 ~ 40965596 (-)
XLOC_026678 cyp3c1 coding upstream 23518 40969242 ~ 40976582 (-)
XLOC_026679 sdk1a coding upstream 33273 40978997 ~ 41292569 (-)
XLOC_026680 CR769786.1 coding upstream 366298 41312022 ~ 41312143 (-)
XLOC_026666 NA non-coding downstream 530708 40396063 ~ 40405386 (-)
XLOC_026659 NA non-coding downstream 754440 40180136 ~ 40181654 (-)
XLOC_026657 BX649547.1 non-coding downstream 847293 40088685 ~ 40088801 (-)
XLOC_026654 BX649356.3 non-coding downstream 978620 39957358 ~ 39957474 (-)
XLOC_026681 BX537310.2 non-coding upstream 450399 41396123 ~ 41512210 (-)
XLOC_026687 NA non-coding upstream 1237629 42183353 ~ 42205112 (-)
XLOC_026688 BX005183.3 non-coding upstream 1266986 42212710 ~ 42216013 (-)
XLOC_026689 NA non-coding upstream 1426060 42371784 ~ 42373599 (-)

Expression


Co-expression Network