XLOC_026678 (cyp3c1)


Basic Information

Item Value
gene id XLOC_026678
gene name cyp3c1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 40969242 ~ 40976582 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051958
CATGTATATACTCTGAAATTACAATGAGGGACTTGTTTTTGAGCAACAGTACAGCAGGTTTGTTTAGTGAAGACACAGAAGTAGAACTCCGTGTTGAGCAGCGGTGGTGAGCATTAGTGTACATGAGCATTTGTTGTACACTAAAGAATACATTGATTTACAATGTTTGATCTCTCGTCTCTGTCTGTGACCTGGACCCTGGTGGTTCTGGTCATAACCCTCCTTTTAATTTACGGTGTTTGGCCACATGGATTTTTCAAAAAACTGGGAATTCCAGGACCAAGACCTTTGCCATTTGTTGGCACGGCTTTATCATACTCTAAAGGCATCTGTAATTTTGACATAGAATGTTCTAAGAAGTATGGAAAAGTATGGGGGATCTATGATGGAAGGCTTCCATTGCTACTTGTTACTGATCTGGAAATGATCAAAACGATTTTGGTGAAAGACTGTTATTCTACCTTCACTAACAGACGGaatatgAATCCAGATTTGGTTGGCCCTTTTGCTGATGGAATAACATTGGTTAAAGATGAGAGGTGGAGGCGAATCCGAAGTTCACTCTCTCCATATTTCACTAGTGGACGACTGAAGGAGatatttcccaTTGCTATGACACATGCTGATCGTTTTATTGAAAATATGGAAAAGAAAGACCCCAATCTACCACTTAAAATAAAAGATGTTGTGGCTCCATACAGTTTAGATGTTGTCGCCAGCTCCTCCTTCAGCGTTGACTTCGACTCCATAAACAACCCTGATGATCCGTTTGTTACCAGTATCAAAAGTTTTTTCAACATCAATCCACTCAGTCCTCTCTTTCTGCTTTTAGctttTTGTCCCTCTGCTGCAAATCTTTTGGCAAAAATGGGCATAAGTTTGTTTTCAAGATCAACTACAGATTTTTACTACAAGGCCCTGAGAAAGATTAAGGATGAGCACAATGAATCAAATggtCGAGTAGACTTCCTCAAGCTCATGATCCAGAATCAAATACCTGATGATCAAGTGAAGGACACTGCAAGTGAACAACCAGTAAAAGgaTTAACAGACCATGAGATTCTCTCCCAATCCTTCATTTTCATCTTGGGTGGTTATGAGACTACAAGCACGACTCTCTCTTACCTCCTCTATAATCTTGCTACTAATCCGGACTGCCTGGAAAAGCTGGTTGAGGAGATCGACAAAAACTTCCCTCTTGATATTCCCATCACATACGATGCATTGATGAGAATGGATTACTTGGAAATGGCCATACATGAATCAATGCGTGTCTTTCCTGCTGGTCCTCGCTTAGAAAGGGTCTGTAAAAAGACCGTAGAGATCAACGGCATTACCATACCAAAAAACACACTGGTTGGAATTCCTTTGTATGTTTTAAGTCGTGATCCAGACCTCTGGGAGTCTCCTAATGAGTTCAAGCCTGAGAGATTCAGTCCAGAGAGCAAGACAGAGATCAACCAGTGTGCCTTCATGCCTTTTGGACTCGGGCCTCGAAACTGCATTGGAATGAGGTTTGCTCTAATGATGATGAAGCTTCTTGTTGTGAAGCTGCTACAGAAATACACTGTGGAAACATGTAAAGAGACGCAGATCCCTGTAcagctgaactttttttttcagccGAAGGTTCCCATCACACTGAAGTTAATACCAAGGTCTCACAAGGAAAAACAATAATGGAAATGTGGAGCATTATAATAGCATacacaatttaattttagtaATGGATAATTAACAAAATTACCTGTATTAAGGTTTAATTTTAGGTGTCTATATACTGTATGCTGTCTTTTTATATTCACCATTTACTAATTACATTGAAATTATTGCTCGTTGTTTCGTGGTtcattaatgttttgtttattttatactgATTGATGATGTTTGATgtttaaaaatactacattattaAAAAGCATAATTTTAAA
>TCONS_00051959
GCATTAGTGTACATGAGCATTTGTTGTACACTAAAGAATACATTGATTTACAATGTTTGATCTCTCGTCTCTGTCTGTGACCTGGACCCTGGTGGTTCTGGTCATAACCCTCCTTTTAATTTACGGTGTTTGGCCACATGGATTTTTCAAAAAACTGGGAATTCCAGGACCAAGACCTTTGCCATTTGTTGGCACGGCTTTATCATACTCTAAAGGCATCTGTAATTTTGACATAGAATGTTCTAAGAAGTATGGAAAAGTATGGGGGATCTATGATGGAAGGCTTCCATTGCTACTTGTTACTGATCTGGAAATGATCAAAACGATTTTGGTGAAAGACTGTTATTCTACCTTCACTAACAGACGGaatatgAATCCAGATTTGGTTGGCCCTTTTGCTGATGGAATAACATTGGTTAAAGATGAGAGGTGGAGGCGAATCCGAAGTTCACTCTCTCCATATTTCACTAGTGGACGACTGAAGGAGatatttcccaTTGCTATGACACATGCTGATCGTTTTATTGAAAATATGGAAAAGAAAGACCCCAATCTACCACTTAAAATAAAAGATGTTGTGGCTCCATACAGTTTAGATGTTGTCGCCAGCTCCTCCTTCAGCGTTGACTTCGACTCCATAAACAACCCTGATGATCCGTTTGTTACCAGTATCAAAAGTTTTTTCAACATCAATCCACTCAGTCCTCTCTTTCTGCTTTTAGctttTTGTCCCTCTGCTGCAAATCTTTTGGCAAAAATGGGCATAAGTTTGTTTTCAAGATCAACTACAGATTTTTACTACAAGGCCCTGAGAAAGATTAAGGATGAGCACAATGAATCAAATggtCGAGTAGACTTCCTCAAGCTCATGATCCAGAATCAAATACCTGATGATCAAGTGAAGGACACTGCAAGTGAACAACCAGTAAAAGgaTTAACAGACCATGAGATTCTCTCCCAATCCTTCATTTTCATCTTGGGTGGTTATGAGACTACAAGCACGACTCTCTCTTACCTCCTCTATAATCTTGCTACTAATCCGGACTGCCTGGAAAAGCTGGTTGAGGAGATCGACAAAAACTTCCCTCTTGATATTCCCATCACATACGATGCATTGATGAGAATGGATTACTTGGAAATGGCCATACATGAATCAATGCGTGTCTTTCCTGCTGGTCCTCGCTTAGAAAGGGTCTGTAAAAAGACCGTAGAGATCAACGGCATTACCATACCAAAAAACACACTGGTTGGAATTCCTTTGTATGTTTTAAGTCGTGATCCAGACCTCTGGGAGTCTCCTAATGAGTTCAAGCCTGAGAGATTCAGTCCAGAGAGCAAGACAGAGATCAACCAGTGTGCCTTCATGCCTTTTGGACTCGGGCCTCGAAACTGCATTGGAATGAGGTTTGCTCTAATGATGATGAAGCTTCTTGTTGTGAAGCTGCTACAGAAATACACTGTGGAAACATGTAAAGAGACGCAGATCCCTGTAcagctgaactttttttttcagccGAAGGTTCCCATCACACTGAAGTTAATACCAAGGTCTCACAAGGAAAAACAATAATGGAAATGTGGAGCATTATAATAGCATacacaatttaattttagtaATGGATAATTAACAAAATTACCTGTATTAAGGTTTAATTTTAGGTGTCTATATACTGTATGCTGTCTTTTTATATTCACCATTTACTAATTACATTGAAATTATTGCTCGTTGTTTCGTGGTtca
>TCONS_00051960
ctttTTGTCCCTCTGCTGCAAATCTTTTGGCAAAAATGGGCATAAGTTTGTTTTCAAGATCAACTACAGATTTTTACTACAAGGCCCTGAGAAAGATTAAGGATGAGCACAATGAATCAAATGTTTGTTTGCCACTTTTTCACTCTTCAGATTTCTTCCATAACAGATTGCTCAGAAATGTTGGTGCAGCAgtagattatgattattattatgttgtgttttttttaatcagggtCGAGTAGACTTCCTCAAGCTCATGATCCAGAATCAAATACCTGATGATCAAGTGAAGGACACTGCAAGTGAACAACCAGTAAAAGgaTTAACAGACCATGAGATTCTCTCCCAATCCTTCATTTTCATCTTGGGTGGTTATGAGACTACAAGCACGACTCTCTCTTACCTCCTCTATAATCTTGCTACTAATCCGGACTGCCTGGAAAAGCTGGTTGAGGAGATCGACAAAAACTTCCCTCTTGATATTCCCATCACATACGATGCATTGATGAGAATGGATTACTTGGAAATGG
>TCONS_00051961
AATCGTCGTACTTTACACGATAAAAACTAACTGTTTCGCTTTATGTATGCTTCTTAACAAGAAACCCCGTTAATAAGAAATATGCGTCAAAGGTGTAAAAcgattaatgtttgtttttttctttcatatgaCCCTACTTCCGGATCACTCTCGGTGTGAACGCGAATAAACCACAGCATTAGTGTACATGAGCATTTGTTGTACACTAAAGAATACATTGATTTACAATGTTTGATCTCTCGTCTCTGTCTGTGACCTGGACCCTGGTGGTTCTGGTCATAACCCTCCTTTTAATTTACGGTGTTTGGCCACATGGATTTTTCAAAAAACTGGGAATTCCAGGACCAAGACCTTTGCCATTTGTTGGCACGGCTTTATCATACTCTAAAGGCATCTGTAATTTTGACATAGAATGTTCTAAGAAGTATGGAAAAGTATGGGGGATCTATGATGGAAGGCTTCCATTGCTACTTGTTACTGATCTGGAAATGATCAAAACGATTTTGGTGAAAGACTGTTATTCTACCTTCACTAACAGACGGaatatgAATCCAGATTTGGTTGGCCCTTTTGCTGATGGAATAACATTGGTTAAAGATGAGAGGTGGAGGCGAATC

Function

symbol description
cyp3c1 Enables heme binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including digestive system; heart; integument; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in familial Mediterranean fever. Orthologous to human CYP3A4 (cytochrome P450 family 3 subfamily A member 4).

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008395 steroid hydroxylase activity molecular_function
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3060 Enables heme binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including digestive system; heart; integument; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in familial Mediterranean fever. Orthologous to human CYP3A4 (cytochrome P450 family 3 subfamily A member 4).

Ensembl:

ensembl_id ENSDARG00000015575

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051958 False 1931 mRNA 0.39 14 40969242 40976582
TCONS_00051959 False 1741 mRNA 0.40 13 40969322 40976288
TCONS_00051960 False 530 mRNA 0.39 3 40970110 40973791
TCONS_00051961 True 617 mRNA 0.39 5 40975202 40976463

Neighbor

gene id symbol gene type direction distance location
XLOC_026677 cyp3c3 coding downstream 3646 40958870 ~ 40965596 (-)
XLOC_026676 cyp3c3 coding downstream 13462 40947961 ~ 40955780 (-)
XLOC_026675 cyp3c4 coding downstream 23518 40936094 ~ 40945724 (-)
XLOC_026674 foxk1 coding downstream 35827 40901743 ~ 40933415 (-)
XLOC_026673 ap5z1 coding downstream 72315 40876553 ~ 40896927 (-)
XLOC_026679 sdk1a coding upstream 2415 40978997 ~ 41292569 (-)
XLOC_026680 CR769786.1 coding upstream 335440 41312022 ~ 41312143 (-)
XLOC_026681 BX537310.2 coding upstream 419541 41396123 ~ 41512210 (-)
XLOC_026682 si:ch211-222n22.1 coding upstream 554697 41531279 ~ 41535761 (-)
XLOC_026683 BX324110.1 coding upstream 653023 41629605 ~ 41715690 (-)
XLOC_026671 NA non-coding downstream 191519 40774418 ~ 40777723 (-)
XLOC_026666 NA non-coding downstream 563856 40396063 ~ 40405386 (-)
XLOC_026659 NA non-coding downstream 787588 40180136 ~ 40181654 (-)
XLOC_026657 BX649547.1 non-coding downstream 880441 40088685 ~ 40088801 (-)
XLOC_026654 BX649356.3 non-coding downstream 1011768 39957358 ~ 39957474 (-)
XLOC_026687 NA non-coding upstream 1206771 42183353 ~ 42205112 (-)
XLOC_026688 BX005183.3 non-coding upstream 1236128 42212710 ~ 42216013 (-)
XLOC_026689 NA non-coding upstream 1395202 42371784 ~ 42373599 (-)

Expression


Co-expression Network