Fish Transcriptome and Expression Database

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model fish

XLOC_026680 (CR769786.1)

Basic Information

Item	Value
gene id	XLOC_026680
gene name	CR769786.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007114.7
NCBI id	CM002887.2
chromosome length	62628489
location	41312022 ~ 41312143 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051964
GCTAATAGCCAGCAGCTTggtctctgcaactctcacatatctgctcactgaagctaaacagggctgcacctggtcagtacctggaaaGGAGACCACatagaaaagctaggttgctaaCGGAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000100059

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00051964	True	122	rRNA	0.49	1	41312022	41312143

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_026679	sdk1a	coding	downstream	19453	40978997 ~ 41292569 (-)
XLOC_026678	cyp3c1	coding	downstream	335440	40969242 ~ 40976582 (-)
XLOC_026677	cyp3c3	coding	downstream	346426	40958870 ~ 40965596 (-)
XLOC_026676	cyp3c3	coding	downstream	356242	40947961 ~ 40955780 (-)
XLOC_026675	cyp3c4	coding	downstream	366298	40936094 ~ 40945724 (-)
XLOC_026681	BX537310.2	coding	upstream	83980	41396123 ~ 41512210 (-)
XLOC_026682	si:ch211-222n22.1	coding	upstream	219136	41531279 ~ 41535761 (-)
XLOC_026683	BX324110.1	coding	upstream	317462	41629605 ~ 41715690 (-)
XLOC_026684	grifin	coding	upstream	472399	41784542 ~ 41795917 (-)
XLOC_026685	ttyh3a	coding	upstream	643215	41955358 ~ 42086648 (-)
XLOC_026671	NA	non-coding	downstream	534299	40774418 ~ 40777723 (-)
XLOC_026666	NA	non-coding	downstream	906636	40396063 ~ 40405386 (-)
XLOC_026659	NA	non-coding	downstream	1130368	40180136 ~ 40181654 (-)
XLOC_026657	BX649547.1	non-coding	downstream	1223221	40088685 ~ 40088801 (-)
XLOC_026654	BX649356.3	non-coding	downstream	1354548	39957358 ~ 39957474 (-)
XLOC_026687	NA	non-coding	upstream	871210	42183353 ~ 42205112 (-)
XLOC_026688	BX005183.3	non-coding	upstream	900567	42212710 ~ 42216013 (-)
XLOC_026689	NA	non-coding	upstream	1059641	42371784 ~ 42373599 (-)
XLOC_026690	NA	non-coding	upstream	1236801	42548944 ~ 42746784 (-)

Expression

Co-expression Network