XLOC_026684 (grifin)


Basic Information

Item Value
gene id XLOC_026684
gene name grifin
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 41784542 ~ 41795917 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051970
GGCCAAACCAGGACACTAAGATTTCAACAGCATAATCATCTGTCTACCTTGGTGACCTGCTCTTTTCCCTCTCACAAGATTCCATCTCAAAGACTATTTGGAGAAGCTCCTCAAGCTATGCAACCTGGTTAAGTGGAATGAAGATACTCATCCTTCCATTTTCTAAACTGGAAGCTGATCAATACACAACGCTGAAGACGAGATGACATTACGGTTTGAGGCTTCCTGTCCTGATGGCCTATGTCCAGGATGGAGTGTCATCCTAAAAGGAGAAACCCCACCTGAGGCCAGCAAGTTTGAGATCAATTTCCTGTGTGACCGCGATGACAGAGTAGCATTCCATTTCAACCCGCGCTTCACCGAGTCTGATATCatctgcaactcttacatggcCAACCGTTGGGGTCAGGAGGAGAGATGCAACCACTTCCCCCTCGGCGTAGAGGAGCCTTTCCAGATTGAGATTTACTCCGACAACGACCACTTCCACGTTTACATCGACAAAGCCAAAGTGATGCAGTATAAGCACCGTGTGGAAGACCTGAAGACCATCACTAAACTGCAAGTGGTGAATGACGTCAAGATCTCCTCTCTGGAGATCActaaaaaacttttttactgAGTCTGGGCGGTGCATTCAATTGGAGCTCGCTTTATGTTTGTTGACAGTGCATCAATGTATTTTCGCATTCCTGTTGAAAACCTTTTATTGGTCAAGAGGATCTTCTTGGGTTGATCTGCTAGTAAAGGTGTGATTATCTGTATTGGCATGCCGTATAACTGAACTCTATATTCATTTGAATCTCTGAATAAATGAGAGGTCAATGACAGACTCGTTTTTGATTTGATGAGTGTGTTTGGTGACTCAgtatgtttaaaattaaatacaaataaataggcTTCCAGCTGACCTCCTGTTTTTTCAGAAAATCGATTCAAAATTATGCAGAGAAGTCAATTCTGAGGAAAATTATTCCAAGAAATCAATACTTATATGCTCATACAAATAGAGTGCTGAAGTTGTGGGGTCAAAAACTGGAAGACTATTGTTCCTGGTTAATTCAACATTTTTGGGgtacatttataattttctttattattattattattaatattatttgtatataaacaaataatgaacaatgatCTGTCACGGGAATTAGAGTCATGCTTTTTCACTAACAAAGTTCTTATTCTTATAAAGATCTTGTTctcgttttgtttgatttttactgTCTTATAGTTAATACAAACTAATTTTTCTAGTTTTcatgaattatttttaattacctGAACTTAATTTTTCACAAATCATTTTTAATTACCTCAACTTAATTTTACTAGTTTTcatgaattatttttaattaccttaacttaatttttctagttttcatgaattatttttaattacctcaacttaatttttctagtttTATGGCTAAATTTTTGTAGTTAGTGCAACATATTCTAGTTGCCCTAACAAATTTTTTTCTAGTGAAAACAGCTTAATTTTTCTAAATCCCGCAACGTAATTTTACTACTAacaacaacttaatttttaattaactttaaaaattaattattaattaattattttaatttttttttaattaacttatttttttttagctcttagatttttttttttttttttttagatctagTAACTTAGTATTGATAGTTGCCTTGATTACATTTTTCTGGTTATAGCAACTAATTTTTCTAAtttttctaattacatttttctgGTTATAGCAACTAATTTTTCTAATTTTTCTTCTGGTAAATTTTTTTTCTAGTTAGACAAACTTaatttgcttaattaccctaacttattTTTTCTAGTTAGTGCAacaacatttttgcagtttttgtactTTAATCTTATCACTGTTTTACTCTTTAGCCtgaatttaaaatgataattcgCCCACAAAtttacactcaagtggttctaaatgcTTATGAATTTATCTTTTAAAAGCCTctactgactttcatagtaagaaaacaaaaacaaacaaaaaaacatgaaagtcaattgctttttttttttttttttttttcaacaatccAACGTATATGTACCTTTGTGTTGCACAGAAGAAACTCAATCAggtgtgaattttcatttttgtgtgaacaacTG
>TCONS_00051971
AGCTGGAAGCTGATCAATACACAACGCTGAAGACGAGATGACATTACGGTTTGAGGCTTCCTGTCCTGATGGCCTATGTCCAGGATGGAGTGTCATCCTAAAAGGAGAAACCCCACCTGAGGCCAGCAAGTTTGAGATCAATTTCCTGTGTGACCGCGATGACAGAGTAGCATTCCATTTCAACCCGCGCTTCACCGAGTCTGATATCatctgcaactcttacatggcCAACCGTTGGGGTCAGGAGGAGAGATGCAACCACTTCCCCCTCGGCGTAGAGGAGCCTTTCCAGATTGAGATTTACTCCGACAACGACCACTTCCACGTTTACATCGACAAAGCCAAAGTGATGCAGTATAAGCACCGTGTGGAAGACCTGAAGACCATCACTAAACTGCAAGTGGTGAATGACGTCAAGATCTCCTCTCTGGAGATCActaaaaaacttttttactgAGTCTGGGCGGTGCATTCAATTGGAGCTCGCTTTATGTTTGTTGACAGTGCATCAATGTATTTTCGCATTCCTGTTGAAAACCTTTTATTGGTCAAGAGGATCTTCTTGGGTTGATCTGCTAGTAAAGGTGTGATTATCTGTATTGGCATGCCGTATAACTGAACTCTATATTCATTTGAATCTCTGAATAAATGAGAGGTCAATGACA

Function

symbol description
grifin Enables lactose binding activity. Acts upstream of or within camera-type eye development. Predicted to be active in cytoplasm. Is expressed in brain; eye; pleuroperitoneal region; and solid lens vesicle. Orthologous to human GRIFIN (galectin-related inter-fiber protein).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005737 cytoplasm cellular_component
GO:0030395 lactose binding molecular_function
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-163 Enables lactose binding activity. Acts upstream of or within camera-type eye development. Predicted to be active in cytoplasm. Is expressed in brain; eye; pleuroperitoneal region; and solid lens vesicle. Orthologous to human GRIFIN (galectin-related inter-fiber protein).

Ensembl:

ensembl_id ENSDARG00000033382

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051970 False 2149 mRNA 0.32 5 41784542 41795917
TCONS_00051971 True 665 mRNA 0.45 4 41785861 41791178

Neighbor

gene id symbol gene type direction distance location
XLOC_026683 BX324110.1 coding downstream 68852 41629605 ~ 41715690 (-)
XLOC_026682 si:ch211-222n22.1 coding downstream 248781 41531279 ~ 41535761 (-)
XLOC_026681 BX537310.2 coding downstream 272332 41396123 ~ 41512210 (-)
XLOC_026680 CR769786.1 coding downstream 472399 41312022 ~ 41312143 (-)
XLOC_026679 sdk1a coding downstream 491973 40978997 ~ 41292569 (-)
XLOC_026685 ttyh3a coding upstream 159441 41955358 ~ 42086648 (-)
XLOC_026686 nudt1 coding upstream 325249 42121166 ~ 42125655 (-)
XLOC_026687 NA coding upstream 387436 42183353 ~ 42205112 (-)
XLOC_026688 BX005183.3 coding upstream 416793 42212710 ~ 42216013 (-)
XLOC_026689 NA coding upstream 575867 42371784 ~ 42373599 (-)
XLOC_026671 NA non-coding downstream 1006819 40774418 ~ 40777723 (-)
XLOC_026666 NA non-coding downstream 1379156 40396063 ~ 40405386 (-)
XLOC_026659 NA non-coding downstream 1602888 40180136 ~ 40181654 (-)
XLOC_026690 NA non-coding upstream 753027 42548944 ~ 42746784 (-)
XLOC_026691 CABZ01079183.1 non-coding upstream 1070166 42866083 ~ 42866200 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_03041320_03042564 GRIFIN coding CI01000046 null 3041320 ~ 3042750 (+)