XLOC_026686 (nudt1)


Basic Information

Item Value
gene id XLOC_026686
gene name nudt1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 42121166 ~ 42125655 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051977
GTGAATCTGAATCCTCCACGTGACACTGAACAACACGCGGGAACAAGCGAGAGATTCATCAGTATACTTCGACTCAAATTCATAACATACACAAACATTCATTCTGTTTTTGTACAAGTTATTACGTTCTGTCTCCATAGGCTTCTTTGGACAAAGATTATGTTCACGTCTAAGCTGCTGACCCTGGTGCTGGTGGTCCAGCCCGGCCGGGTGTTGCTGGGCATGAAGAAAAGAGGCTTTGGAGCTGGAAAATGGAACGGCTTTGGAGGAAAAGTCCAGACTGGAGAGACCATAGAGCAAGCGGCCAGACGgGAGCTGCTGGAGGAAAGTGGCCTCACTGTCGACACCCTCCACAAGATTGGAAAcatcaaatttgagtttattggGGAAACCGAACTAATGGATGTTCACATTTTTAGAGCTGACAACTATGAAGGAGAGCCAGCCGAATCAGACGaGATGAGGCCGCAGTGGTTCGACATTGATAAAATCCCTTTCAGCCAGATGTGGGCCGATGACATCTTGTGGTTTCCTCTGATGCTTCAGAAAAAGAGGTTTTTGGGGTATTTTAAGTTCCAGGGTCATGATGTAATAGTGGAGCATAAACTGGACGAGGTGGAGGACCTTTGAGTGGggttttaaagagacagttcacttaaaaatgaacattgtttcatcatttactcaatatCAAGTAAGtccaaataaagttatttttattctgtagaattaaaaaaaaaagatattcagAACAATGTTGGagaccggtaaccattgacctccatggtAAGgagaaaaatactatagaagtcagcattcttcaaaatatcttcttttgtagtCAACAGAAGAAAGTTCAATGGAATACGTGTagggagagtaaattatgacaaaatgctaattttttggATGAACATTTGCTTTAATACCGTTTTTGATGGATGTTACCACTGTATCAGTGGAAATTATCCAGCAAGATCTGATGTTCACACTACTGAGTATGTTTCATGGATATGGCCAAATATGTAATATGGCCAATATTTGCCTGATATCCAGTGCTGTATTTTGTATTAGCACATTCTTTTGATGTGAGAAGTTTCCATTGAAATCCACACATTCAAGAATCTGTATTCTGATACGGTTTGGTTTTACTTAATTCTTTGTCTTTTCTACAATTAGTAGTGtactaaataacaaaaaaagaaattgcaTCGTCAACTACATGtcatttactaaataaaacatCAGAAAATCCAGACAAAAA

Function

symbol description
nudt1 Enables hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides. Predicted to act upstream of or within DNA repair. Orthologous to human NUDT1 (nudix hydrolase 1).

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0008413 8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-040426-2757 Enables hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides. Predicted to act upstream of or within DNA repair. Orthologous to human NUDT1 (nudix hydrolase 1).

Ensembl:

ensembl_id ENSDARG00000030573

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051977 True 1264 mRNA 0.39 4 42121166 42125655

Neighbor

gene id symbol gene type direction distance location
XLOC_026685 ttyh3a coding downstream 34518 41955358 ~ 42086648 (-)
XLOC_026684 grifin coding downstream 325249 41784542 ~ 41795917 (-)
XLOC_026683 BX324110.1 coding downstream 405476 41629605 ~ 41715690 (-)
XLOC_026682 si:ch211-222n22.1 coding downstream 585405 41531279 ~ 41535761 (-)
XLOC_026681 BX537310.2 coding downstream 608956 41396123 ~ 41512210 (-)
XLOC_026687 NA coding upstream 57698 42183353 ~ 42205112 (-)
XLOC_026688 BX005183.3 coding upstream 87055 42212710 ~ 42216013 (-)
XLOC_026689 NA coding upstream 246129 42371784 ~ 42373599 (-)
XLOC_026690 NA coding upstream 423289 42548944 ~ 42746784 (-)
XLOC_026691 CABZ01079183.1 coding upstream 740428 42866083 ~ 42866200 (-)
XLOC_026680 CR769786.1 non-coding downstream 809023 41312022 ~ 41312143 (-)
XLOC_026671 NA non-coding downstream 1343443 40774418 ~ 40777723 (-)
XLOC_026666 NA non-coding downstream 1715780 40396063 ~ 40405386 (-)
XLOC_026659 NA non-coding downstream 1939512 40180136 ~ 40181654 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_02868880_02871348 NUDT1, 8ODP coding CI01000046 null 2868880 ~ 2871611 (+)