XLOC_026689


Basic Information

Item Value
gene id XLOC_026689
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 42371784 ~ 42373599 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052482
agtaccaacatgttacaaatgagaattttccccacaaattctttgcaaaactggaccaccacctatttcatttgatgacaattttaaggcaaacagcatccaaaactggccagacagcagataccctggctaatcttttaaaggtttatgatgagcaggaactgaatgatgtcagttcatgacggactactgttatcaaaggtcttttggtcttgctgcgtgagcgtgacttaagattctttaggaacaccatggtaagacttcattcattcttttcacaattaggcatgtttaatgaaaagatgaaagttttgaaaacttttacttaataacatatttgtaatcacgaatagttgatgaatcatataatattggctcagtcattttgatactgtccttacattaatatccttgaattatgtttttagattgataatcctgctgactgaagatgctttattggccctgcatccactgagggtctctgttgtcctgaagaatgaattggacaccacccacagcacacttccagacctttcttgtcttgtatggattaatcagactccagcttgTGACGATCCCAcatccgactactcactgtccttcacttacttcccggagcaccagagcacctcaccttgaagaagagcaccgtttacaccccattcacgttgtaaataaagcaccccccggggacttgtctgtaaacttatccaactgtgtcgctgttttccctctgcctcgctacaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataatctgctctccgttaaacagaaattgggggaaaaataaatgggggcgaataattctgacttcaacgatatatatatatatatatatatatatacagtttctgtgtagtttacactaaacgagtcacttcacagaatgtgcacttattatttttttt
>TCONS_00052481
agtaccaacatgttacaaatgagaattttccccacaaattctttgcaaaactggaccaccacctatttcatttgatgacaattttaaggcaaacagcatccaaaactggccagacagcagataccctggctaatcttttaaaggtttatgatgagcaggaactgaatgatgtcagttcatgacggactactgttatcaaaggtcttttggtcttgctgcgtgagcgtgacttaagattctttaggaacaccatgattgataatcctgctgactgaagatgctttattggccctgcatccactgagggtctctgttgtcctgaagaatgaattggacaccacccacagcacacttccagacctttcttgtcttgtatggattaatcagactccagcttgTGACGATCCCAcatccgactactcactgtccttcacttacttcccggagcaccagagcacctcaccttgaagaagagcaccgtttacaccccattcacgttgtaaataaagcaccccccggggacttgtctgtaaacttatccaactgtgtcgctgttttccctctgcctcgctacaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataatctgctctccgttaaacagaaattgggggaaaaataaatgggggcgaataattctgacttcaacgatatatatatatatatatatatatatacagtttctgtgtagtttacactaaacgagtcacttcacagaatgtgcacttattatttttttt

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0021532 neural tube patterning biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0035270 endocrine system development biological_process
GO:0006364 rRNA processing biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0006396 RNA processing biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0060429 epithelium development biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0021906 hindbrain-spinal cord boundary formation biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0021915 neural tube development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0060485 mesenchyme development biological_process
GO:0000469 cleavage involved in rRNA processing biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0048339 paraxial mesoderm development biological_process
GO:0048340 paraxial mesoderm morphogenesis biological_process
GO:0048341 paraxial mesoderm formation biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0010002 cardioblast differentiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0030902 hindbrain development biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:0032040 small-subunit processome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005634 nucleus cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052482 False 966 lncRNA 0.36 3 42371784 42373599
TCONS_00052481 True 792 lncRNA 0.39 4 42371784 42373599

Neighbor

gene id symbol gene type direction distance location
XLOC_026688 BX005183.3 coding downstream 155771 42212710 ~ 42216013 (-)
XLOC_026687 NA coding downstream 166672 42183353 ~ 42205112 (-)
XLOC_026686 nudt1 coding downstream 246129 42121166 ~ 42125655 (-)
XLOC_026685 ttyh3a coding downstream 285136 41955358 ~ 42086648 (-)
XLOC_026684 grifin coding downstream 575867 41784542 ~ 41795917 (-)
XLOC_026690 NA coding upstream 175345 42548944 ~ 42746784 (-)
XLOC_026691 CABZ01079183.1 coding upstream 492484 42866083 ~ 42866200 (-)
XLOC_026692 BX908797.1 coding upstream 544544 42918143 ~ 42968544 (-)
XLOC_026693 mafk coding upstream 590446 42964045 ~ 42981739 (-)
XLOC_026694 NA coding upstream 651222 43024821 ~ 43026735 (-)
XLOC_026681 BX537310.2 non-coding downstream 859574 41396123 ~ 41512210 (-)
XLOC_026680 CR769786.1 non-coding downstream 1059641 41312022 ~ 41312143 (-)
XLOC_026671 NA non-coding downstream 1594061 40774418 ~ 40777723 (-)
XLOC_026695 NA non-coding upstream 813595 43187194 ~ 43189085 (-)
XLOC_026702 BX682557.2 non-coding upstream 1493186 43866785 ~ 43875129 (-)

Expression


Co-expression Network