XLOC_026690


Basic Information

Item Value
gene id XLOC_026690
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 42548944 ~ 42746784 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052483
CTTTGCCCTAACTGGACTTGTGGATGAGCAGTGCTCTAGTCCCGCTCCTCAACTCAACTAATAAATGACTGGAAATAGTTATAAGGCGCTGTCGCTCGCGTTATGACAGACAAAACTACTCTGCCATGTCTCTGTCTGTGCGGAATACATAAAGGCTCTGCCTTGAATTAATCACTCGCTCTTTAATGGATCTTTGAGGATCGCGCTTGACGCAGTGAGGAgctgcagctctttgtattccgAGGCCAAGAGGAACCTTGTGCTTTTTTTGCCCCCGTCCGGTATCTACTGCCTCTTAGAAAATGTCAAGGGGGTACATGGTGACATAGGGACCCTGGTTTGGTTACGGAGAGACTCTTGCTTCGCTCTGCGAAAGAGttcaaGACTACAGCGGCACAGATGCGGTGCGTTTCTTTTCAACCAAGCGTCAACAAAGATCAGTTCAAGGGGAGATTCCGAGCATCATTAGTTCGGACTCGCCAACTGATTGGACACGCCGCAGGCCTTCATTTCATTCCCAGCCAGAGATTATCACAGCGATTGATCCAGAGCTGTGCAACGCGAACTGATGCATTAAGGATTCCAAACCCTGCGTCCTCTGTGAAAGGCTGAGGCACGGTGCCTCTATTGACTGATAGCTTTCTGCTGGAAGCAGGACAGGCCAGCTACTGATGGTGGATCTCAGACATGCGTGTGATCACTAGACAGTTTAACCGGGGGTCTACCTCTGGGCCCATAAATGAGACTAAAATGGTGGGAGAGAAGAAAAGACAAGAGGATGAAATCCATCAACAATGCTCTTCCCTGGGGAA
>TCONS_00052484
CTTTGCCCTAACTGGACTTGTGGATGAGCAGTGCTCTAGTCCCGCTCCTCAACTCAACTAATAAATGACTGGAAATAGTTATAAGGCGCTGTCGCTCGCGTTATGACAGACAAAACTACTCTGCCATGTCTCTGTCTGTGCGGAATACATAAAGGCTCTGCCTTGAATTAATCACTCGCTCTTTAATGGATCTTTGAGGATCGCGCTTGACGCAGTGAGGAgctgcagctctttgtattccgAGGCCAAGAGGAACCTTGTGCTTTTTTTGCCCCCGTCCGGTATCTACTGCCTCTTAGAAAATGTCAAGGGGGTACATGGTGACATAGGGACCCTGGTTTGGTTACGGAGAGACTCTTGCTTCGCTCTGCGAAAGAGttcaaGACTACAGCGGCACAGATGCGGTGCGTTTCTTTTCAACCAAGCGTCAACAAAGATCAGTTCAAGGGGAGATTCCGAGCATCATTAGTTCGGTGTGTACATTTCAGACTTATTTACTGACTGAAGGCATGGCAAACTAATTAAGTGAAAGACACTGAACGGGCACTCATTAGGCAAGCTATCCATTTATGCGTGCAGACGTCCTGCTGGCTCCTACTGGAAAAGGCCCTCGCAGATTCATTGTTCTAATGAAGTTGGCAAAAGCCACCCGGTGCCAGTGTAGTGACAAATCACTGTCAGGCTCCCACTGAGTGAGACGTTTTCAAGGCAAACAGTAAAAAGTCAAGCATATTCATTGCTGAGTAGGACTAAGTGACAGATTGTGACCATTAGATGATCAGATCTTGCAGATTTTAGACAACAAAAACAGTAGAAGCCACAGTTCACAAAGGAAATGACACTTTAGCGCTACATAATGTACAGCTGAAATCAAAATATTAGCCCTTCtgggattttttcttttttttcaaatattttcaaagttATGCTT

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0016188 synaptic vesicle maturation biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0030001 metal ion transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0044425 obsolete membrane part cellular_component
GO:0043005 neuron projection cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0016020 membrane cellular_component
GO:0022804 active transmembrane transporter activity molecular_function
GO:0046873 metal ion transmembrane transporter activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0008509 anion transmembrane transporter activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015294 solute molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0005326 neurotransmitter transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052483 False 812 lncRNA 0.49 5 42548944 42746784
TCONS_00052484 True 931 lncRNA 0.44 2 42681982 42746784

Neighbor

gene id symbol gene type direction distance location
XLOC_026689 NA coding downstream 175345 42371784 ~ 42373599 (-)
XLOC_026688 BX005183.3 coding downstream 332931 42212710 ~ 42216013 (-)
XLOC_026687 NA coding downstream 343832 42183353 ~ 42205112 (-)
XLOC_026686 nudt1 coding downstream 423289 42121166 ~ 42125655 (-)
XLOC_026685 ttyh3a coding downstream 462296 41955358 ~ 42086648 (-)
XLOC_026691 CABZ01079183.1 coding upstream 119299 42866083 ~ 42866200 (-)
XLOC_026692 BX908797.1 coding upstream 171359 42918143 ~ 42968544 (-)
XLOC_026693 mafk coding upstream 217261 42964045 ~ 42981739 (-)
XLOC_026694 NA coding upstream 278037 43024821 ~ 43026735 (-)
XLOC_026695 NA coding upstream 440410 43187194 ~ 43189085 (-)
XLOC_026681 BX537310.2 non-coding downstream 1036734 41396123 ~ 41512210 (-)
XLOC_026680 CR769786.1 non-coding downstream 1236801 41312022 ~ 41312143 (-)
XLOC_026702 BX682557.2 non-coding upstream 1120001 43866785 ~ 43875129 (-)
XLOC_026703 BX682557.1 non-coding upstream 1131672 43878456 ~ 43889443 (-)

Expression


Co-expression Network