LOC118936440 (LOC106597702)


Basic Information

Item Value
gene id LOC118936440
gene name LOC106597702
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 36631767 ~ 36644531 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986940.1
CTGTGCCAATATAGTGTCTGTGACAGcacgggcagcgccattgaggctatctTCATATTAAAGTAGTAACATTTCTTCTTCACTATTGTCTGAGCCCTTCTGATGACCCGATTGGACATGACTTCAACAGGGTCACCAGTAGGgctcagccaatgaagttggtagtcccacccagttgactaaaTTCAAATTGTGAAAGTACATGCAAATGCAGCATTTTGCCCATTAGAGGCcaatatctttctctctgtctgggctACAATTGTAGACGGTTGCGTAATTATGCTTTTCACCTGTGAAAGGCTGTTGTGCTGCTAATGAGGGAGTTCTATTAACCTGAGCCGAGGTGCCCCGGTCCATGGCCCCTGACATGAATGGATAAAAGCGGTGAGGGCGGAGCACCCTTCTAAAATTGAACAGTAGCCTTACATTTAGGTATTtgtcctaacactacacagctgattcagatTAACAAAGCTggatgattatttgaatcagctttgtAGGGCTAGgggaataaaaataaaatgtgcagCCCTTTGGGATTCAGGTGACTGAGTGTGGGAAGCCTTTGTCATAGGGTAAAAGTTGCATACCGCTGGGCTGTAGGCTGCACACCTTGGGTCAAATATCAGGTTCTGTAGCTGTGTATTTTATCGGAACAATTCTGTTCTACAATGATTATTTTCCTTAGCTCAGGGTTGTTGTGCCTATTGATTGCAACTGTGGGCATACAAGCACAACAGACACCTTCTATAAATGACCTCAACGCTGAATGCCTTGGTAACGTTATTCGTTTAAGTGTCGCTCATCTTTTTGAAGAGGTTGATGCTGTCTTCAatGACACACAAATCATAAACCTGACGCCTGGCCTTGCTACTCGGTGTGGATTCAGCTTTAAATTTGATCCCATGGGGAATGCCATGTTTTTTTGCTTCTCTTCAAAACTGCTTTTCCCAAAACATGGGTGAGATGTTCAGCTTGGTCATGCAGTTCAGGCTGCCAGGAAACCACATGACTGATGTGTATAGAGTGGGCAAAACCTGTCGCTACACCCCCTGGACCTCCCGAGAGATTCTGTGCGACCGCAACTACATGGAGGTGTCTGTCAGAAGGACTCTTCCAGACATCCAAACCGTCCCCGAACACCCCACCGGGGGCCCGAAAGCAAGGAGCGCCAACTTCCGGAGAGGAGCTGAGGCTGTTGCTTCAGGATACAAAAGGACAGCAGTCGTCTTTAGTCCTAGCAAGAAGGTCATGAATGTGGATGAGGTCCAAAGAAAGGGCTATGCAATAGCCAACACTCCCACACGACTGGTATTAAGAAGCTCTCATAATGCAGAGAAGACATACCTCCAGAATGTAGCTGGGGTTCCGATGCGGGTGCTCTCAACCTCAAACTTCTTTGAGCAGAAGTGGCTGGTTACTCGAGTAGATGCCACGGCTGTTTGTCCAACACCAGAGGCAGTGGCCTTTACTCCAGAAGTGATCACCTGGTACATGCCCAAGCACATAGACCCACTTTTCTCCTCTGATGCCTTCACTATGTTGGAGGTGTACATGGGAATTGACGCTAAGAGGCTGGACACTGAAGAAATGGCTGCCAGAAACTACTCGGTTTTAGTCACAGAGGCTCATATTATTGTTGAAATTCCGGTGGGGGTGGTTGGCGGCTATTTCAAGAGCCATATTCAGGATGACCAGTACTTTGTCACTTATACCATTGAGCCCATGCTTGAGTTGCTGTGGATCGAGGAGGTCGCACACGAGGACTCCAGCTATAAAGTCCTCTTCCCTATCACAACACCTCCGATGGCCAGGCCTCCACAAGTTCGCAACTACACAGTTCCTGAGCTGGCAGTGTTTGTGCTTGAGTTGGGGACCTTCAACCTTGATGTGGAGCTGCTGAACATCACCTTTCCCACCATGGTGCTAACTGTTGCAGAGTGCAACGCCAGAGGCTTCAATGTTCAGGAGCAGAGATCCCCAGACAACACCTTGAAGACCTTCAGGATGGAGGTGCCCTTCTCAGAGACGGTGGTCTTTAAGAGAAGGGCGGAACAAGGTGTCACAACCTTCACTCTTCAGCTGATCTACGGCCTGGTCATCTTTCCAGAGTATGAgcctttctctcactctgccgTTGTGGACACTGTACTGCTGGACATTGGTATGTCTCTGGACTACGCCAAACTACTCTTGAATGGTTTCCTCTCCTTAATGATTTGCCACCCTCAGTCACTGGCAACTGATCAGGAGAACTTCCACATcactgtggactacaggaaccAAGAGCCCTTTTTCGTCTTGGTTGGCAAGCGGCTGCTTAACCATGAGCTtgctcaacagtatttaacagagGGCGACGCAGACCTCACCATCACGTTGCCCTTCTCTTCGCCGGACGCAGTGTTTGAGTCGGTTCACTCGTCCTCTGTCAGGAGCAGACTGGATGTGGCTCTGTTGAATCCTTACAACAACATGACCATCAAATACTTTTCCCTGGATTGCAGCTTCCTCAAAACGCTGACTGGCTCCCCCACCTACAAGTGTTTCTCTAACGGAACGATGACTGCGCTGGCGCTGAAGGTGGAGTCTGCTCCCGGTCTGAACCCCGGTCAGCTGACCCTGAGCGACCCCACCTGTGGTCCCACCTACTGCGACGATCGCTTCGCCTACTTCCACTTCACTGTGAACTCCTGTGGCACCACCAGGAAGTTTATCAACAATGTCATGCTGTATGAGAACGAAATCTCCTTGCCAGATGAACATGAGGTGAAGCTGAATGCCACGATGTCTTCAGAGGAGGAATATCAGTTGAAGGTTTCCTGCTACTATGTGGCCAACATCACTCGCACATTAGCCTTCCTGACCAGGCCGCGTGACAACGAGCCTTTTGCCGAGACTGGGACGTGTCGACTAATGGTCAGAATGACACTCGCTCAGGGTCTTTGTCCATTGTGATGTGGTGATCTGTGATGCCAGTAGTCCCTCTGGCGGCCCCTGTAGTGGACAATGTGTGAATCAGGACAACCCGAAAAGAGGTCAATGACATGTCAAACACCTCTTTGAGGAGCGTAATTTATATGCTTCTTCTGGATACATTCTTTGGGTGTAATGTCTTGTTCTAACATGTCAAATAAAGTGTTATGTATATAAAACAA

Function

NR:

description
LOW QUALITY PROTEIN: uncharacterized protein LOC110522010

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986940.1 True 3164 mRNA 0.49 19 36631767 36644531

Neighbor

gene id symbol gene type direction distance location
trnag-ucc-227 NA coding downstream 10662 36621034 ~ 36621105 (-)
trnag-ucc-226 NA coding downstream 12064 36619632 ~ 36619703 (-)
trnag-ucc-225 NA coding downstream 13466 36618230 ~ 36618301 (-)
trnag-ucc-224 NA coding downstream 14868 36616828 ~ 36616899 (-)
trnag-ucc-223 NA coding downstream 16270 36615426 ~ 36615497 (-)
LOC110531159 LOC106571926 coding upstream 23668 36668199 ~ 36682342 (-)
LOC110531980 LOC106571891 coding upstream 36764 36681295 ~ 36689171 (-)
LOC110531981 LOC106571892 coding upstream 77456 36721987 ~ 36820593 (-)
LOC110531982 LOC106571893 coding upstream 183351 36827882 ~ 36907700 (-)
fbxw12 fbxw12 coding upstream 308990 36953521 ~ 36963920 (-)
trnag-ucc-169 NA non-coding downstream 108103 36523382 ~ 36523664 (-)
G799212 NA non-coding downstream 173133 36456192 ~ 36458634 (-)
G799207 NA non-coding downstream 178734 36446170 ~ 36453033 (-)
G799208 NA non-coding downstream 184756 36446622 ~ 36447011 (-)
G799196 NA non-coding downstream 194306 36437251 ~ 36437461 (-)
G799353 NA non-coding upstream 6758 36651289 ~ 36651597 (-)
G799368 NA non-coding upstream 24887 36669418 ~ 36669643 (-)
G799434 NA non-coding upstream 160416 36804947 ~ 36805294 (-)
G799440 NA non-coding upstream 168205 36812736 ~ 36813012 (-)
G799441 NA non-coding upstream 168701 36813232 ~ 36813566 (-)
G798993 NA other downstream 481130 36150338 ~ 36150637 (-)
LOC110531979 brpf1 other downstream 652652 35948544 ~ 35979307 (-)
LOC118966032 LOC106571870 other downstream 1110435 35492026 ~ 35521884 (-)
LOC110531966 LOC106571884 other downstream 1244635 35381661 ~ 35400349 (-)
G798195 NA other downstream 1277092 35354219 ~ 35354675 (-)
G800318 NA other upstream 699864 37344395 ~ 37345147 (-)
LOC110532015 LOC106566767 other upstream 2196678 38839265 ~ 38841685 (-)
G802100 NA other upstream 2321925 38966456 ~ 38996032 (-)
G802138 NA other upstream 2405999 39050530 ~ 39061381 (-)

Expression


Co-expression Network