LOC110531992 (LOC106571904)


Basic Information

Item Value
gene id LOC110531992
gene name LOC106571904
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 37365677 ~ 37372883 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615554.2
AATACCCCCAGGTGGCACTTGCAGTGTAAATTTAGccaacctatatatatatatatataaagaccCACTTGGTCCTCAGCTATCTGGTTGTCAATTTTGCATTCAGTTTAGGCCTTATTTGGTCTCCTGTCATTAACAGAACAAATATACACATGGATTAAGTCAGATTGTTTTAATTTGGTGCGGTGGTGATAAAagcatatatattttttcatctaTAGCCATACAGATTAAGATGTCCAGTATACTTGCTGTTGCTTATTGCCATTTATTTCTATCGCTCCCCCTGATGTTCAAAATGGCAGCAGGGGCCGCAGTCTAGTTTTGCCGCTGTTGACGACTTTCAACAGTCTGCATGATAAAGGCCCTCCTACTTCTCATATGTCGTCATTTAGGCTTGCCCAGAAAGAAATGCATACGGGAGAAAATTGGAGGAAAACTAGCCCAACTGAACAGCCAGCTCAGCCCAGGCCCCCCTTTTTTATTCGGGGTTTCGTTGTTTTTCGGTCCTCGGTGAAAGTAGGAGATGAGGGGACTCCTGCAGTTTTACCGGGCTCTGAACGCCCTGTGTAACCGACAATTCAAGCGAAGAGCTGGATTTGCCGGTTCTCAGTGCGGGTTTAGCGGAACCGTGTCTGATAGCAAGCCACAGCCACGCTTTGGACTGCTGTTTGACATCGATGGCGTGCTTGTCAGGGGAAAGATGCCCATCCCTGCTGCAAAAAAGGCCTTCCAAAAACTGGTCAACTCTCAGGGACAATTTGTGGTGCCAGTTGTTTTTGTTACCAACGCAGGGAATTGCATGCGGCAGATGAAAGCGGACCAGCTCTCTCACATCCTGGGTGTGCCTATCACTATGGACCAGGTGATGATGTCACACAGTCCACTGAGGATGTTCAAGAAGTACCATGACAAGTGTGTTCTGGTGTCAGGACAAGGACCCGTCCTGGATATTGCCAAAAACTTGGGCTTCCAGAATGTGGTCAGTGTCGACATGCTGAGAGAGTCATTTCCTCTTCTGGACATGGTGGACCACAACAGACGACCCAAAGTGCCGTCCAGTCCAATTGCCAACCTTCCCACAGTAGAAGCTGTTATTCTGTTTGGGGAGCCCATCCGATGGGAGACCAACCTCCAGCTGATAATTGATATCCTGTTGACCAATGGGAACCTGAGCGGAGCCCACCAGAGCCAGAAGCTACCCCAACTCCCCCTGCTGGCCTGCAACATGGACCTCATGTGGATGGCCGAGGCCCAGTCTCCACGGTTTGGTCATGGGACGTTCCTTGTGTGCTTGGAGAACATCTATAAGAAAATAACAGGTAAAGAGGTGAAGTACAAGGCTCTGATGGGGAAGCCCAGTGAACTGACCTATCACTTTGCTGAGTACCTTATCAGAGGCCAGGCCGTGGAGAGAAACTGGACACAGCCCATCACCACCCTCTATGCTATTGGGGATAATCTGATGACTGACATCTATGGGGCCAACCTCTACAACCGCTACCTGGAAGAGAGGACAAGGAGGAAGACCTCCAAAGCTGTCACCAAGATGGCCACCGCCACGGGCTCCGACGCAGCCCTGCCCCAGGTCAACGACCACGTAGAAAATGCCTGGGAGAGCGAGCTGGCACCCCCCTCCGCCACCTCCTGCAAATCTATCCTGGTATGTACTGGGGTGTACAACCCTCACACAGAGGTGCCCAATGACACCAACCAGTGCATCAAGGAGACTGTGTTCCACGGGCATCGGGACTTCCACTTTGACCCGGCGCTGGTGGAGCCCGGGCACATCGTGCAGGACGTGGCTGACGCTGTGGAGCTCATCTTTGAGCAGGAGAAATTTGTGCCTCAGTAAAGTTCTCCGATTGGTGTCGTCATGGCGACCTCAGTAGAGATCTCGGTTGGCCTGTGCCGGCCATAGAATCAGAATGGATtctattctaattctatggttcTGGCTTTAAAAGGAGGGGGTGCTCAAAATAATGCAGAGCAGATCCTACCAAACTGACTAGTGTTGTGCAGATTTGTTTTGCATGGTACGATGGGCATGGAGATTCCCTTGGTTTTTAGCTGGGAAAACACCACCCACGGAGTTACTTTGGACAGTGTTTACAACTTGTCAGGGCATTGAAGTTTCTTAAGAGGTCATATTCAAACTCGTAATGGTGTAAAGTATTGAACTCTTATTCCTTCTGTTGTATTGTTTCATTGTGGGTTTAAAACTAATCAAGTTTAGCACAATTACCCACTTTTAAGTAATGGCAATTGATTTGAATAACAGCCTTATTTAATGGTATTATACTGTACGTATTTTCTTAGTTGTGATTACGTATAAAGATTGACAGTATTTTAAAATTGTGTCGTCGTCTTATGTATCTTTATGACTGCAATAAGTTATCAATATTTTTATGAAGTCTCTGTGTAGATTCCCTCACAAACGGACCATATTATTGTCTACCATACATTTAGTCTGTTACGTCTACAGTATGCATGCATTTCATGAGATAGATTTAAtgcattatactgtactgtactgtaagatgACCTATTAGGTTTAGGTTGCAATACTGACCTTCAACTGTGCTGTCTACATTATTTCTAGCAATATAAACCATATAACCTGTATTTGCACAGAACAAAACGATTCATTTTAATGTTACCATATCTTGCTGGGCTCGTAAACTTGCCCTTAGTGTTAAAATGTACAATTTGTCGTAGGCATTAGAACTTTGACTGCAGATGCAAAGACTGTATCTAGCCCTTTATATTtacataaaatatataaatataagagAAGCTATATTTTCATTGGTGGATTAACCCATGCAGTTCAGTGGATGCATTACCTGTTTTACAAGATGTTATCAATGTCAATATTGCTTGTTATGATTGAAAATAGCGTTGCTTTAACAAATTAAACATTCTGGCTACTTATATTTCAGTGCTGAAGATAGGCTATACAGCATGAGTTTGTTTACATGAAAACAAATGACTCCATAGGAAATAAAACCTGCTTATCTTCTTGCCA

Function

NR:

description
haloacid dehalogenase-like hydrolase domain-containing 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615554.2 True 3031 mRNA 0.45 8 37365677 37372883

Neighbor

gene id symbol gene type direction distance location
LOC110531988 LOC106571900 coding downstream 283908 37034299 ~ 37081769 (-)
fbxw12 fbxw12 coding downstream 401757 36953521 ~ 36963920 (-)
LOC110531982 LOC106571893 coding downstream 457977 36827882 ~ 36907700 (-)
LOC110531981 LOC106571892 coding downstream 545084 36721987 ~ 36820593 (-)
LOC110531980 LOC106571891 coding downstream 676506 36681295 ~ 36689171 (-)
cnbpa cnbp coding upstream 337 37373220 ~ 37377288 (-)
LOC100505416 pparg coding upstream 57010 37429893 ~ 37436194 (-)
LOC110531996 LOC100136520 coding upstream 68676 37441559 ~ 37476549 (-)
LOC110531998 LOC106571908 coding upstream 194329 37567212 ~ 37581804 (-)
LOC110532001 LOC106571910 coding upstream 255895 37628778 ~ 37634142 (-)
G800274 NA non-coding downstream 830 37295620 ~ 37364847 (-)
G800275 NA non-coding downstream 3710 37360857 ~ 37361967 (-)
G800276 LOC106571902 non-coding downstream 4953 37356933 ~ 37360724 (-)
G800155 NA non-coding downstream 144682 37135664 ~ 37220995 (-)
G800088 NA non-coding downstream 340906 37024007 ~ 37024771 (-)
G800334 NA non-coding upstream 12507 37385390 ~ 37386330 (-)
G800358 NA non-coding upstream 42052 37414935 ~ 37417799 (-)
G800389 NA non-coding upstream 104844 37477727 ~ 37526430 (-)
G800411 NA non-coding upstream 140266 37513149 ~ 37516432 (-)
G800416 NA non-coding upstream 153859 37526742 ~ 37527090 (-)
G800318 NA other downstream 20530 37344395 ~ 37345147 (-)
G798993 NA other downstream 1215040 36150338 ~ 36150637 (-)
LOC110531979 brpf1 other downstream 1386562 35948544 ~ 35979307 (-)
LOC118966032 LOC106571870 other downstream 1844345 35492026 ~ 35521884 (-)
LOC110532015 LOC106566767 other upstream 1468326 38839265 ~ 38841685 (-)
G802100 NA other upstream 1593573 38966456 ~ 38996032 (-)
G802138 NA other upstream 1677647 39050530 ~ 39061381 (-)
G802149 LOC106581475 other upstream 1701598 39074481 ~ 39074720 (-)
G802602 LOC106571943 other upstream 2007867 39380750 ~ 39383210 (-)

Expression


Co-expression Network