cnbpa (cnbp)


Basic Information

Item Value
gene id cnbpa
gene name cnbp
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 37373220 ~ 37377288 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615556.2
GTACTGCAAAAAGACCGTGCCCAAGTGCTGCGTTAGCTTTGACTGGATAACGTGAATGACACATTGTAGAAACTCGTGTTCACACCGCATGTGGCGCAACGGAGAGAGGAGGCGTCAACAGCAGAGAATCGCGTAGCTAGGTTGCTAGCTAAGGAAGATTATGGAGATGAGCAGTAGCGAGTGCTTCCGATGTGGCCGTCCTGGGCATTGGATCAAGAACTGTCCCGAAGCTGGAGGGCGTGGCCGCGGCAGgggcagaggaagaggaaaggatCTGTTCTGCTATCGCTGTGGAGAGCAAGGTCACATTGCCAGGGACTGTGAACAGACTGAGGATGCCTGCTACAACTGCCACAGGAGCGGCCATATTTCCCGTGACTGCAAGGAGCCCAAGAAGGAGCGGGAGCAGTGTTGCTACAGCTGTGGCAAGGCTGGCCACGTGGCCCGCGACTGCGACCATGCCAACGAGCAGAAGTGCTATTCCTGCGGAGGCTTTGGCCACATCCAGAAACTTTGCGATAAAGTCAAATGTTACAGGTGTGGCGAGATCGGCCATGTGGCTGTGCAGTGCAGCAAAGCCAGTGAGGTGAACTGCTACAAGTGCGGCAACACCGGCCACCTTGCGAAAGAGTGCACCATTGAAGCCACAGCATAATCAGTGCCCTTTGTTGCCCCTCCTATTTTTTTCTGGTTGATGGTTGGTTGTATTATTTTCTCTGAATCGTCTTCACCGGCCAAAGGTTGGCTGACCGAGGCTAGTCCCGGGCCAGTGAGCCTCTCGACATGTAATATTgagaaaggggtaaaaaaaaaaaatctttctgCATTCAACACAAAAATTTTGTTTAGTTTGGTAGCAGTGTTATGTTTAATGCTTTGTTAAAGAATCCCCCTTTCCAAGCCACTGGTGAGCAGAGATGAATGAATGGGACTAAATATATGAGATATAGAGGACCTCTGGGCTTGTGGGAAGTGAGTCTCAGTAAGAAGGGAGTAAAAAGAAACCTGAACTTCCATGTATGGTTTGTTTTAGCGGGATAACATGAGTTGGCCAAGAGCATATGACATGGGTAACAGTTCACACCATATGACCCATCTGCATCTGGGCCCTACAAGCAGCTAAGTGCCGGGCGATAACATAAATGATGTGTTATATCGACAAAAGCCGTTTTGAAAGAATCTTAAGTTCTTTTATAatagaaaaaaaataattgtttacAATTTAAAGGAGTATGGGTAAATAGTCCAAGGTAGATGTTTCCCCCAAAAAATGATTTTTGGAAACTTTTACCTTGGAGGAAAAATGTGCATCAAGAACACAGTTGTCAGATCATAAGAATTCGCAGTTATTTGGGAGTGGAGAATGTTttcacaaatcaaatgttatttttgtacaATATCACTTAGACTACTGTAAAAATACCATTTGCTTGTACTCAGTTTTTAAGTCGGAAGGAAATGCAACTGAAGTCCTAGAACATAGAAATGTAATTTTAAACTATCAATAAAGCTGGAGGAGCACAGG
>XM_036987917.1
GGTACTGCAAAAAGACCGTGCCCAAGTGCTGCGTTAGCTTTGACTGGATAACGTGAATGACACATTGTAGAAACTCGTGTTCACACCGCATGTGGCGCAACGGAGAGAGGAGGCGTCAACAGCAGAGAATCGCGTAGCTAGGTTGCTAGCTAAGGAAGATTATGGAGATGAGCAGTAGCGAGTGCTTCCGATGTGGCCGTCCTGGGCATTGGATCAAGAACTGTCCCGAAGCTGGAGGGCGTGGCCGCGGCAGgggcagaggaagagatCTGTTCTGCTATCGCTGTGGAGAGCAAGGTCACATTGCCAGGGACTGTGAACAGACTGAGGATGCCTGCTACAACTGCCACAGGAGCGGCCATATTTCCCGTGACTGCAAGGAGCCCAAGAAGGAGCGGGAGCAGTGTTGCTACAGCTGTGGCAAGGCTGGCCACGTGGCCCGCGACTGCGACCATGCCAACGAGCAGAAGTGCTATTCCTGCGGAGGCTTTGGCCACATCCAGAAACTTTGCGATAAAGTCAAATGTTACAGGTGTGGCGAGATCGGCCATGTGGCTGTGCAGTGCAGCAAAGCCAGTGAGGTGAACTGCTACAAGTGCGGCAACACCGGCCACCTTGCGAAAGAGTGCACCATTGAAGCCACAGCATAATCAGTGCCCTTTGTTGCCCCTCCTATTTTTTTCTGGTTGATGGTTGGTTGTATTATTTTCTCTGAATCGTCTTCACCGGCCAAAGGTTGGCTGACCGAGGCTAGTCCCGGGCCAGTGAGCCTCTCGACATGTAATATTgagaaaggggtaaaaaaaaaaaatctttctgCATTCAACACAAAAATTTTGTTTAGTTTGGTAGCAGTGTTATGTTTAATGCTTTGTTAAAGAATCCCCCTTTCCAAGCCACTGGTGAGCAGAGATGAATGAATGGGACTAAATATATGAGATATAGAGGACCTCTGGGCTTGTGGGAAGTGAGTCTCAGTAAGAAGGGAGTAAAAAGAAACCTGAACTTCCATGTATGGTTTGTTTTAGCGGGATAACATGAGTTGGCCAAGAGCATATGACATGGGTAACAGTTCACACCATATGACCCATCTGCATCTGGGCCCTACAAGCAGCTAAGTGCCGGGCGATAACATAAATGATGTGTTATATCGACAAAAGCCGTTTTGAAAGAATCTTAAGTTCTTTTATAatagaaaaaaaataattgtttacAATTTAAAGGAGTATGGGTAAATAGTCCAAGGTAGATGTTTCCCCCAAAAAATGATTTTTGGAAACTTTTACCTTGGAGGAAAAATGTGCATCAAGAACACAGTTGTCAGATCATAAGAATTCGCAGTTATTTGGGAGTGGAGAATGTTttcacaaatcaaatgttatttttgtacaATATCACTTAGACTACTGTAAAAATACCATTTGCTTGTACTCAGTTTTTAAGTCGGAAGGAAATGCAACTGAAGTCCTAGAACATAGAAATGTAATTTTAAACTATCAATAAAGCTGGAGGAGCACAGG

Function

symbol description
cnbp Enables G-quadruplex DNA binding activity. Involved in G-quadruplex DNA formation and negative regulation of transcription by RNA polymerase II. Predicted to be located in cytosol; endoplasmic reticulum; and nucleus. Predicted to be active in cytoplasm. Implicated in myotonic dystrophy type 2.

NR:

description
PREDICTED: zinc finger protein 9 isoform X2

GO:

id name namespace
GO:0051216 cartilage development biological_process
GO:0014036 neural crest cell fate specification biological_process
GO:0060322 head development biological_process
GO:0003697 single-stranded DNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09250 CNBP; cellular nucleic acid-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615556.2 False 1525 mRNA 0.46 5 37373220 37377287
XM_036987917.1 True 1520 mRNA 0.46 5 37373220 37377288

Neighbor

gene id symbol gene type direction distance location
LOC110531992 LOC106571904 coding downstream 337 37365677 ~ 37372883 (-)
LOC110531988 LOC106571900 coding downstream 291451 37034299 ~ 37081769 (-)
fbxw12 fbxw12 coding downstream 409300 36953521 ~ 36963920 (-)
LOC110531982 LOC106571893 coding downstream 465520 36827882 ~ 36907700 (-)
LOC110531981 LOC106571892 coding downstream 552627 36721987 ~ 36820593 (-)
LOC100505416 pparg coding upstream 52605 37429893 ~ 37436194 (-)
LOC110531996 LOC100136520 coding upstream 64271 37441559 ~ 37476549 (-)
LOC110531998 LOC106571908 coding upstream 189924 37567212 ~ 37581804 (-)
LOC110532001 LOC106571910 coding upstream 251490 37628778 ~ 37634142 (-)
LOC110531161 NA coding upstream 261124 37638412 ~ 37641906 (-)
G800274 NA non-coding downstream 8373 37295620 ~ 37364847 (-)
G800275 NA non-coding downstream 11253 37360857 ~ 37361967 (-)
G800276 LOC106571902 non-coding downstream 12496 37356933 ~ 37360724 (-)
G800155 NA non-coding downstream 152225 37135664 ~ 37220995 (-)
G800088 NA non-coding downstream 348449 37024007 ~ 37024771 (-)
G800334 NA non-coding upstream 8102 37385390 ~ 37386330 (-)
G800358 NA non-coding upstream 37647 37414935 ~ 37417799 (-)
G800389 NA non-coding upstream 100439 37477727 ~ 37526430 (-)
G800411 NA non-coding upstream 135861 37513149 ~ 37516432 (-)
G800416 NA non-coding upstream 149454 37526742 ~ 37527090 (-)
G800318 NA other downstream 28073 37344395 ~ 37345147 (-)
G798993 NA other downstream 1222583 36150338 ~ 36150637 (-)
LOC110531979 brpf1 other downstream 1394105 35948544 ~ 35979307 (-)
LOC118966032 LOC106571870 other downstream 1851888 35492026 ~ 35521884 (-)
LOC110532015 LOC106566767 other upstream 1463921 38839265 ~ 38841685 (-)
G802100 NA other upstream 1589168 38966456 ~ 38996032 (-)
G802138 NA other upstream 1673242 39050530 ~ 39061381 (-)
G802149 LOC106581475 other upstream 1697193 39074481 ~ 39074720 (-)
G802602 LOC106571943 other upstream 2003462 39380750 ~ 39383210 (-)

Expression


Co-expression Network