Item | Value |
---|---|
gene id | LOC110531997 |
gene name | LOC106571907 |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048573.1 |
NCBI id | CM023227.2 |
chromosome length | 79455637 |
location | 37510543 ~ 37516918 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
transcription cofactor vestigial-like protein 4 isoform X2 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_021615561.2 | False | 4650 | mRNA | 0.41 | 6 | 37510543 | 37516918 |
XM_021615560.2 | False | 4824 | mRNA | 0.41 | 6 | 37510548 | 37516918 |
XM_021615562.2 | True | 4800 | mRNA | 0.41 | 6 | 37510554 | 37516918 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
raf1a | LOC106571905 | coding | upstream | 86267 | 37379949 ~ 37424276 (+) |
gp9 | LOC106571903 | coding | upstream | 145695 | 37362028 ~ 37364848 (+) |
iqsec1a | LOC106571902 | coding | upstream | 150527 | 37179890 ~ 37360016 (+) |
nup210 | LOC106571901 | coding | upstream | 344538 | 37102639 ~ 37166005 (+) |
LOC118966039 | NA | coding | upstream | 446859 | 37030760 ~ 37063684 (+) |
tnnc1a | LOC106571909 | coding | downstream | 88283 | 37605201 ~ 37610174 (+) |
LOC110517304 | LOC106571911 | coding | downstream | 149424 | 37666342 ~ 37717107 (+) |
LOC110532004 | LOC106571913 | coding | downstream | 204148 | 37721066 ~ 37729844 (+) |
LOC110532006 | LOC106571916 | coding | downstream | 346762 | 37863680 ~ 37905930 (+) |
LOC110532007 | LOC106571918 | coding | downstream | 406954 | 37923872 ~ 37948962 (+) |
G799789 | NA | non-coding | upstream | 64121 | 37445144 ~ 37446422 (+) |
G799785 | NA | non-coding | upstream | 71600 | 37438691 ~ 37438943 (+) |
G799780 | NA | non-coding | upstream | 92479 | 37416551 ~ 37418064 (+) |
G799779 | NA | non-coding | upstream | 93218 | 37415707 ~ 37417325 (+) |
G799762 | NA | non-coding | upstream | 133334 | 37373159 ~ 37377209 (+) |
G799837 | NA | non-coding | downstream | 13099 | 37530017 ~ 37530463 (+) |
G799863 | NA | non-coding | downstream | 65259 | 37582177 ~ 37582635 (+) |
G799895 | LOC105029132 | non-coding | downstream | 111936 | 37628854 ~ 37630852 (+) |
G799983 | NA | non-coding | downstream | 266407 | 37783325 ~ 37783538 (+) |
G799984 | NA | non-coding | downstream | 267090 | 37784008 ~ 37784214 (+) |
G799578 | LOC106571900 | other | upstream | 474625 | 37034418 ~ 37035918 (+) |
G799053 | NA | other | upstream | 1193738 | 36313129 ~ 36316805 (+) |
G797932 | pphln | other | upstream | 2138395 | 35364988 ~ 35372148 (+) |
G797056 | NA | other | upstream | 2953921 | 34555931 ~ 34556622 (+) |
G796495 | LOC106613263 | other | upstream | 3388803 | 34121422 ~ 34121740 (+) |
G799858 | LOC106571908 | other | downstream | 50327 | 37567245 ~ 37570411 (+) |
G800834 | NA | other | downstream | 553298 | 38070216 ~ 38071433 (+) |
G801778 | NA | other | downstream | 1271143 | 38788061 ~ 38788354 (+) |
G801851 | NA | other | downstream | 1416034 | 38932952 ~ 38933868 (+) |
LOC110532019 | LOC106571933 | other | downstream | 1551454 | 39064150 ~ 39072385 (+) |