LOC110531998 (LOC106571908)


Basic Information

Item Value
gene id LOC110531998
gene name LOC106571908
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 37567212 ~ 37581804 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615565.2
ACCTGGGGAGGGAGATTCGATTTCCTTCTGTCGTGTGTAGGTTATGCAATTGGACTCGGAAACGTATGGAGATTTCCATATCTCTGTGGAAAAAACGGTGGAGGTAAACACGATTTTAAAAAGTCATATAACGAGCCTTCTTGATCCCCTATTTTTTGACACTCATATTCGCTGGGATGCCGCTGTTCCTGCTTGAGACCGCTCTTGGTCAATACACTTCAATTGGTGGGCTTGGAGTCTGGAAACTGGCTCCCGTGTTCAAAGGTGTTGGCCTTGCAGCAGCTGTCCTGTCCTTCTGGCTTAACATTTATTACATTGTCATCATTGCCTGGGCCATATACTATCTCTACAACTCATTTACCTCTGAACTTCCATGGAGCTCATGTGGCAACTCATGGAACACAGAAAAATGTTACTCAAACTACAGTATTGTTGATAACACCAATCTTACCAGCGCGGTGATGGAGTTTTGGGAGCGCAACATGCATCAAATGACCGATGGCTTGGAAAAACCAGGGCAGATCCGAGCGCCACTGGCAATAACACTGGCCATCGCTTGGGTCCTGGTTTACTTCTGTATCTGGAAAGGGGTGAGCTGGACTGGCAAGGTTGTGTACTTCTCGGCCACGTATCCCTATTTCATGCTATTCATTCTGTTCTGCCGTGGAGTGACTCTACCTGGAGCTATGGATGGCATTCTCTTCTATATCACCCCTAACTTTGAAAAACTAAAAGAATCTGAGGTATGGCTGGATGCTGCCACTCAGATATTTTTCTCCTACGGTTTGGGACTGGGCTCACTGATAGCTCTTGGGAGCTATAACCCTTTTAATAATAATGTTTACAGAGACTCTATCATAGTTTGCTGCATCAACTCCTTCACCAGCATGTTTGCTGGCTTTGTCATCTTCTCTATTGTGGGCTTCATGGCGAACGTGACTAAGAGGCCCATAGAAGAAGTTGCAGCTTCAGGTCCAGGCCTGGCTTTCCTGGCCTACCCTGAGGCTGTGACCCAGCtgcctgtctcccctctctgggctATCTTGTTCTTCTCCATGCTGCTGATGCTGGGGATTGACAGTCAGtTCTGCACGGTAGAGGGCTTTATCACAGCTCTGGTGGATGAGTTTCCCAGGGCACTGAGGGGCAGGAGAGAGCTCTTCATCGCTGCTGTCTGCCTGGTATCGTACCTGATCGGCCTATCCAACATCACACAGGGAGGCCTGTACGTGTTCAAACTCTTCGACTACTACTCTGCCAGTGGGATGTGTCTCCTCTTCCTGGTCTTCTTCGAGTGCATCTCCATATCCTGGTTCTATGGTGTGAACAAATTCTATGACAACATCCAGGAGATGATTGGCTACAAGCCCTGTATCTGGTGGAAGCTGTGCTGGGTTTGTTTCACCCCTCTCATCGTGGCCGGGGTGTTCTTGTTCAGTGCAGTCCAAATGGTTCCTCTCACCTTGAACAACTACGTGTTCCCTGCCTGGGGCCAGGGAGTGGGCTGGCTCATGGCTCTGTCCTCCATGGTCCTCATCCCTGGATACATGGTCTACATGTACCTCGGACTCAAGGGCACCTGGAAAGAGCGCCTACGGATAATGTTCCAGCCTCCTGCAGTGGTCCGACGGCCACAGGAGAACGGACCTGAGACAGTGGTTGCCGAGACCAACATTGCTAGTCCCTCTAACGCGGCCAACCCAACTAGTCCATCCAACCCGGTTAGTCCTGCCAATCCAACTGCTACAAGCCCGGTTGCTGCAGCCCCGGCCAACCCAGCACCTCCAGCCATTCCAGCTATGGCTAGCCCTGTGAACCCAACTAGTCCGACCGTTCCAACTGTCCCTACTGTCCCTGCCACTCCAGCCAACCCGACCAGCCCTACCAGCCCACCACCCAATCCGGTTAGCCCAACGGCAAAAGAGACGGCCATCCCACCACCCAACATAGTGAGCTCAACAAACCTGACCAACGCTGAGGCAAATGTCTAGACAAGGCAAAACCCTCATGGAGATTGTGTAGTCGGCGAACATTACAAAGGACTTCCAAGATTTTAATTGATTCACCTACCTCCAGGGGCAATATCTGATCAAACCGGATTTTAAAATCATGTTTAATTTTTCTGCATTTGTAAAACCAACCCGTTAATGTCTTTTTATTGGTATGCATTAAAAATTCTAAAATCAAAGACTGTTAGTGTTCACAAAAACTACCGTAATCTGAGTAAAAATATGTAAACAAACTGTGTAATACTGTGAGAAAAGAAAACAACTATTGAAAATAGAATAGCAATTTGTTCAATATCTTCATGAACCAAGTAAATACAGTGTGACTATAGTAGAGATGAAGTACAAGTGAACAAAATTGTCAACATGGGAGAGTGCAAGGGGCCAAATTATCGTGGTTGTTTACTAAGCCTCACACAGTCATCTCTTTACAAAACTTTGCACTCTGTGAGGCTGATTACAGGCCACATGGCAATGAGGGAACTCTGATGAAGAAGCACAATGCCAATAAGAAGTTTAAAGTCTATGAACCCTGGAATTATCCAGTATATCTGTTGCAAAAgattttgtgtgtgagagagactgtgattttatcttcctttttttttttagtaaAAAAAAGAACTTTTATGTGACAAACATTTTTAGAATTATTTTTAATATGTTTTCTACTATAAATATTGTGACCGAGGACCAAAATCGTAGGCAGACGAAAGCAAAAACGATCTATGCCATGTAGTGTTTGGTTTGAGAAACACAGGGTATcaaaaacatacaaaaaaatGAATGCAAACGCACAGGGTATAGAAAAGTGATTTACAAACATTGACTATCCCATTGATGCTGACAGTCAATCCTGTTTACCTTTTTTTGCATGCTTTCCTCAGGAACATCAAAGAAAAATTCCAAAATGTCTCCTGGCAGATCTAAGACGAGAACAGAGAAGGCCTTAAGCCAGTTATCAACCAATTTATACCAAGCCATAGTCTGTTTGCATGACTGGGCAGATCTCCAGAATATCACTTTGTACACTAGCAAACAATATTGGACCAACTCTATGTTTAAAAATATTcctttttatttcactttatgtGTAATGATCAATTATACTTTGATCAATTTGTATTCAGCAATACAAATGTAGATGTATAGTTGCAGGCCAGTAGAAGAGTGGTctgtttctctttttcttttcGTTGTCTTTGCTTTACTAGTAAAAAGCTCAAAGCTTTAATTTCCACAGACATTTGACATGGCCTGTTAAGACAATGCTAGTTGGCTTATATGGCTTCTATACGGCAGTGAAAAGCATCCGGTCGAACAAAACATGTTTACTTTGAAAAGCAAAACAACCAAGTGAAAATGTGAAATGGCTACAGTTCATGTCCTGTGAATTTTGTATAAAGTTACTCTACCACAGTTTTCTCTGGAACTTTGTTGTAAAACTGTACCGTGTAAAACATGTAACTGTGAATGTCTGTAATACATTGGAAGTTATTGTCTaaatgttgaaaaaaaaaattctaaagaGTTGCTGTTTTCTGCAATAACATTTTGATCACAGAAACTAAAGCACATATCTTACAGAAATATACGAAATGATGATGACAATGAAGATATTGACGATTATATTAAAAATAGAAACTATGTCTagtaaaaaaaatcacattgttttgtttattttgaaCTGTCTCACTGCCTAAtgcacaacataatataaacatgATATGTGTTTAAATGGTGTCATATGATAAAGCACGATTGTCATGTTATACAAAAAGAAAAAAggctgaaaaaataaataattatagaAAATATGAATAA
>XM_021615563.2
GGTGGCCAATAGGTTGATGACCCCCTCTACAAATGTGTGATAGCCTATCATCGGAGAAACTCGTGTTCCCTTAATGTCTTACCCCTGCTTTAGAACTACTCAGGATTTCCCAAACAGTGAAAACACGTTAAAAAATCATGAAATATTGAGAAAACATGCAGTGCGATGTCAGTAGTGGATGTGTAGACTAcacggaggaggaggggggcgaCTTTCAGATGACATTGACGCTATGTAGATGGGAGTTGAGAATTGCGCTCCCCTGAACGTTCCTGGTTGTTGATGTTAGACAGTTGCACAAGGCGAAGCGGCTGCTTCTCGTGTTGATTCAGCCACCTCGTCAGCACCTAGCCGCTGGACAGCTCCCTGCAGCGGGGTACGTGCGCGCTCTCCTCTAAGACACTTTTGGCGCTTGTTCCAAGTCTTTTAATGGAAAGACTATATCTTTATGTTCCAAGTAAAACTGGAAGTTTACAACTTCAGGGGGAATCTACGGATACCTCGTTTCGAGATTTGTGGCAGGCAGCACATCGTCGGTGGCAGAGAGCACAGCTTTATTGTTAACGGCAACTGACGAGCCGTGTCCCCATAGCGGTCACCTGCTTCCAGACATTTGGTTCAAAGGTTTTGGTCAAAAACCGCGAAACTGCTGTCTGTGTGGACTGGTGCTGAAGCTTCGCGTCCCAAGGCCAGGACCACTACAAATCGAAAGACATGGCGACGAACGGCACCAAAACGGATGGACAAGTAACAGAACTTAACGAAGTGGCAACTAATGACAAACCCAAGTCACTGGACGTGAAAAGCGACAAGACAAAAAAGGATCTTCCCGAAAGAGAAACCTGGGGAGGGAGATTCGATTTCCTTCTGTCGTGTGTAGGTTATGCAATTGGACTCGGAAACGTATGGAGATTTCCATATCTCTGTGGAAAAAACGGTGGAGGAGCCTTCTTGATCCCCTATTTTTTGACACTCATATTCGCTGGGATGCCGCTGTTCCTGCTTGAGACCGCTCTTGGTCAATACACTTCAATTGGTGGGCTTGGAGTCTGGAAACTGGCTCCCGTGTTCAAAGGTGTTGGCCTTGCAGCAGCTGTCCTGTCCTTCTGGCTTAACATTTATTACATTGTCATCATTGCCTGGGCCATATACTATCTCTACAACTCATTTACCTCTGAACTTCCATGGAGCTCATGTGGCAACTCATGGAACACAGAAAAATGTTACTCAAACTACAGTATTGTTGATAACACCAATCTTACCAGCGCGGTGATGGAGTTTTGGGAGCGCAACATGCATCAAATGACCGATGGCTTGGAAAAACCAGGGCAGATCCGAGCGCCACTGGCAATAACACTGGCCATCGCTTGGGTCCTGGTTTACTTCTGTATCTGGAAAGGGGTGAGCTGGACTGGCAAGGTTGTGTACTTCTCGGCCACGTATCCCTATTTCATGCTATTCATTCTGTTCTGCCGTGGAGTGACTCTACCTGGAGCTATGGATGGCATTCTCTTCTATATCACCCCTAACTTTGAAAAACTAAAAGAATCTGAGGTATGGCTGGATGCTGCCACTCAGATATTTTTCTCCTACGGTTTGGGACTGGGCTCACTGATAGCTCTTGGGAGCTATAACCCTTTTAATAATAATGTTTACAGAGACTCTATCATAGTTTGCTGCATCAACTCCTTCACCAGCATGTTTGCTGGCTTTGTCATCTTCTCTATTGTGGGCTTCATGGCGAACGTGACTAAGAGGCCCATAGAAGAAGTTGCAGCTTCAGGTCCAGGCCTGGCTTTCCTGGCCTACCCTGAGGCTGTGACCCAGCtgcctgtctcccctctctgggctATCTTGTTCTTCTCCATGCTGCTGATGCTGGGGATTGACAGTCAGtTCTGCACGGTAGAGGGCTTTATCACAGCTCTGGTGGATGAGTTTCCCAGGGCACTGAGGGGCAGGAGAGAGCTCTTCATCGCTGCTGTCTGCCTGGTATCGTACCTGATCGGCCTATCCAACATCACACAGGGAGGCCTGTACGTGTTCAAACTCTTCGACTACTACTCTGCCAGTGGGATGTGTCTCCTCTTCCTGGTCTTCTTCGAGTGCATCTCCATATCCTGGTTCTATGGTGTGAACAAATTCTATGACAACATCCAGGAGATGATTGGCTACAAGCCCTGTATCTGGTGGAAGCTGTGCTGGGTTTGTTTCACCCCTCTCATCGTGGCCGGGGTGTTCTTGTTCAGTGCAGTCCAAATGGTTCCTCTCACCTTGAACAACTACGTGTTCCCTGCCTGGGGCCAGGGAGTGGGCTGGCTCATGGCTCTGTCCTCCATGGTCCTCATCCCTGGATACATGGTCTACATGTACCTCGGACTCAAGGGCACCTGGAAAGAGCGCCTACGGATAATGTTCCAGCCTCCTGCAGTGGTCCGACGGCCACAGGAGAACGGACCTGAGACAGTGGTTGCCGAGACCAACATTGCTAGTCCCTCTAACGCGGCCAACCCAACTAGTCCATCCAACCCGGTTAGTCCTGCCAATCCAACTGCTACAAGCCCGGTTGCTGCAGCCCCGGCCAACCCAGCACCTCCAGCCATTCCAGCTATGGCTAGCCCTGTGAACCCAACTAGTCCGACCGTTCCAACTGTCCCTACTGTCCCTGCCACTCCAGCCAACCCGACCAGCCCTACCAGCCCACCACCCAATCCGGTTAGCCCAACGGCAAAAGAGACGGCCATCCCACCACCCAACATAGTGAGCTCAACAAACCTGACCAACGCTGAGGCAAATGTCTAGACAAGGCAAAACCCTCATGGAGATTGTGTAGTCGGCGAACATTACAAAGGACTTCCAAGATTTTAATTGATTCACCTACCTCCAGGGGCAATATCTGATCAAACCGGATTTTAAAATCATGTTTAATTTTTCTGCATTTGTAAAACCAACCCGTTAATGTCTTTTTATTGGTATGCATTAAAAATTCTAAAATCAAAGACTGTTAGTGTTCACAAAAACTACCGTAATCTGAGTAAAAATATGTAAACAAACTGTGTAATACTGTGAGAAAAGAAAACAACTATTGAAAATAGAATAGCAATTTGTTCAATATCTTCATGAACCAAGTAAATACAGTGTGACTATAGTAGAGATGAAGTACAAGTGAACAAAATTGTCAACATGGGAGAGTGCAAGGGGCCAAATTATCGTGGTTGTTTACTAAGCCTCACACAGTCATCTCTTTACAAAACTTTGCACTCTGTGAGGCTGATTACAGGCCACATGGCAATGAGGGAACTCTGATGAAGAAGCACAATGCCAATAAGAAGTTTAAAGTCTATGAACCCTGGAATTATCCAGTATATCTGTTGCAAAAgattttgtgtgtgagagagactgtgattttatcttcctttttttttttagtaaAAAAAAGAACTTTTATGTGACAAACATTTTTAGAATTATTTTTAATATGTTTTCTACTATAAATATTGTGACCGAGGACCAAAATCGTAGGCAGACGAAAGCAAAAACGATCTATGCCATGTAGTGTTTGGTTTGAGAAACACAGGGTATcaaaaacatacaaaaaaatGAATGCAAACGCACAGGGTATAGAAAAGTGATTTACAAACATTGACTATCCCATTGATGCTGACAGTCAATCCTGTTTACCTTTTTTTGCATGCTTTCCTCAGGAACATCAAAGAAAAATTCCAAAATGTCTCCTGGCAGATCTAAGACGAGAACAGAGAAGGCCTTAAGCCAGTTATCAACCAATTTATACCAAGCCATAGTCTGTTTGCATGACTGGGCAGATCTCCAGAATATCACTTTGTACACTAGCAAACAATATTGGACCAACTCTATGTTTAAAAATATTcctttttatttcactttatgtGTAATGATCAATTATACTTTGATCAATTTGTATTCAGCAATACAAATGTAGATGTATAGTTGCAGGCCAGTAGAAGAGTGGTctgtttctctttttcttttcGTTGTCTTTGCTTTACTAGTAAAAAGCTCAAAGCTTTAATTTCCACAGACATTTGACATGGCCTGTTAAGACAATGCTAGTTGGCTTATATGGCTTCTATACGGCAGTGAAAAGCATCCGGTCGAACAAAACATGTTTACTTTGAAAAGCAAAACAACCAAGTGAAAATGTGAAATGGCTACAGTTCATGTCCTGTGAATTTTGTATAAAGTTACTCTACCACAGTTTTCTCTGGAACTTTGTTGTAAAACTGTACCGTGTAAAACATGTAACTGTGAATGTCTGTAATACATTGGAAGTTATTGTCTaaatgttgaaaaaaaaaattctaaagaGTTGCTGTTTTCTGCAATAACATTTTGATCACAGAAACTAAAGCACATATCTTACAGAAATATACGAAATGATGATGACAATGAAGATATTGACGATTATATTAAAAATAGAAACTATGTCTagtaaaaaaaatcacattgttttgtttattttgaaCTGTCTCACTGCCTAAtgcacaacataatataaacatgATATGTGTTTAAATGGTGTCATATGATAAAGCACGATTGTCATGTTATACAAAAAGAAAAAAggctgaaaaaataaataattatagaAAATATGAATAA

Function

NR:

description
sodium- and chloride-dependent GABA transporter 1-like isoform X1

GO:

id name namespace
GO:0015812 gamma-aminobutyric acid transport biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0003333 amino acid transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005328 neurotransmitter molecular_function
GO:0005332 gamma-aminobutyric acid molecular_function

KEGG:

id description
K05034 SLC6A1, GAT1; solute carrier family 6 (neurotransmitter transporter, GABA) member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615565.2 False 3830 mRNA 0.42 14 37567212 37579899
XM_021615563.2 True 4641 mRNA 0.44 15 37567212 37581804

Neighbor

gene id symbol gene type direction distance location
LOC110531996 LOC100136520 coding downstream 90663 37441559 ~ 37476549 (-)
LOC100505416 pparg coding downstream 131018 37429893 ~ 37436194 (-)
cnbpa cnbp coding downstream 189924 37373220 ~ 37377288 (-)
LOC110531992 LOC106571904 coding downstream 194329 37365677 ~ 37372883 (-)
LOC110531988 LOC106571900 coding downstream 485443 37034299 ~ 37081769 (-)
LOC110532001 LOC106571910 coding upstream 46974 37628778 ~ 37634142 (-)
LOC110531161 NA coding upstream 56608 37638412 ~ 37641906 (-)
LOC110532003 LOC106571912 coding upstream 148186 37729990 ~ 37770397 (-)
LOC110531162 LOC106571919 coding upstream 366936 37948740 ~ 37953210 (-)
LOC110531163 LOC102784363 coding upstream 371806 37953610 ~ 37961387 (-)
G800436 NA non-coding downstream 3121 37563878 ~ 37564091 (-)
G800416 NA non-coding downstream 40122 37526742 ~ 37527090 (-)
G800389 NA non-coding downstream 40782 37477727 ~ 37526430 (-)
G800411 NA non-coding downstream 50780 37513149 ~ 37516432 (-)
G800358 NA non-coding downstream 149413 37414935 ~ 37417799 (-)
G800438 LOC106571909 non-coding upstream 23438 37605242 ~ 37610295 (-)
G800503 NA non-coding upstream 106356 37688160 ~ 37746372 (-)
G800553 NA non-coding upstream 190116 37771920 ~ 37772129 (-)
G800558 NA non-coding upstream 202202 37784006 ~ 37784304 (-)
G800318 NA other downstream 222065 37344395 ~ 37345147 (-)
LOC110531982 LOC106571893 other downstream 659564 36827882 ~ 36907700 (-)
G798993 NA other downstream 1416575 36150338 ~ 36150637 (-)
LOC110531979 brpf1 other downstream 1588097 35948544 ~ 35979307 (-)
LOC118966032 LOC106571870 other downstream 2045880 35492026 ~ 35521884 (-)
LOC110532015 LOC106566767 other upstream 1259405 38839265 ~ 38841685 (-)
G802100 NA other upstream 1384652 38966456 ~ 38996032 (-)
G802138 NA other upstream 1468726 39050530 ~ 39061381 (-)
G802149 LOC106581475 other upstream 1492677 39074481 ~ 39074720 (-)
G802602 LOC106571943 other upstream 1798946 39380750 ~ 39383210 (-)

Expression


Co-expression Network