tnnc1a (LOC106571909)


Basic Information

Item Value
gene id tnnc1a
gene name LOC106571909
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 37605201 ~ 37610174 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615570.2
GCTCCAGCTATAAAACCCTCCCAGGATGGGGCCAGTGTCCTGCTCCTAGCTGTGCTCTACCTCGCTCCTCTGTGCCACTACATCCTACAGACAGACGGGCAGCGGCCAAGCCAAGCTTCCATCATGAACGACATCTACAAAGCAGCGGTAGAGCAGCTGACAGACGAGCAGAAAAATGAGTTCAAGGCAGCCTTTGACATCTTCGTCCAGGATGCAGAGGATGGCTGCATCAGCACCAAGGAGCTGGGCAAGGTGATGAGGATGCTGGGGCAGAACCCCACCCCCGAGGAGCTGCAGGAGATGATCGACGAGGTGGATGAAGACGGCAGTGGGACGGTGGACTTTGACGAGTTCCTGGTGATGATGGTGAGGTGCATGAAAGACGACAGCAAAGGAAAGACAGAGGAGGAACTGGCGGACCTCTTCCGCATGTTTGACAAGAATGCGGACGGCTACATAGACCTGGAGGAGCTGAAGGGGATGCTGGAGGCCACAGGGGAGGCCATCACCGAGGACGACATCGAGGAGCTCATGAAGGACGGGGACAAGAACAACGACGGGAAAATTGACTATGACGAGTTCTTGGAGTTTATGAAAGGAGTAGAATAAACAGCATCAAGAGAAGACAGAGTCTGCTGACCCTTAGTGATATTTTTTCTATTTCTCTTCAACATCATAGACATCTACGGAAAAGCCGGCGGTTGACTTTTGGACGTCATCGGCAGAACTTCTGAACGACTTTGCAAGACCTAGTTCAATAATCTGATTGCTTGTGTATTTTTTATAACTTTTTGAAATGTCTTGCATTGTTGTAAATACTGTCTGTAACCTGTTTTAGGTGCCCCATACACTGCGTTTGAGTAAATGTAACCAACCGAAATACTCACATTAACAACTCACATATCACTACTTGAACTAAGCATTATTGTTTAACTTCAAATGCATATGAATTTCTGCAGTGCCACAAACAGTTTACAAATCTCTTATTTTTCCAAGTTGCTGATGTTGTGCTGCCGGACAGAATGCTGTTTGAAATACATCCTTTTAGGCATAGGACAGTACATCTGTCCCTGTAAGTCCCTGTAATTATACCATACTTTGATTAGCCCGTTAGTAGTCTAAACATACATTGAAATGCAATGTAGCCACAGCGGCACATTGCAACGGTTGTACGTTTTAACAGATTCCCTCAGGGCCGTTTAATCTGCTGGAGAGCCTGTGGTGGATGTACACACCGTACGTCTGCTTAGAATGTACAGTCAAGTAATAAATGTGTTTGCCAAAGCAACGCCTGGTTTGCCTGA
>XM_021615571.2
GCTCCAGCTATAAAACCCTCCCAGGATGGGGCCAGTGTCCTGCTCCTAGCTGTGCTCTACCTCGCTCCTCTGTGCCACTACATCCTACAGACAGACGGGCAGCGGCCAAGCCAAGCTTCCATCATGAACGACATCTACAAAGCAGCGGTAGAGCAGCTGACAGACGAGCAGAAAAATGAGTTCAAGGCAGCCTTTGACATCTTCGTCCAGGATGCAGAGGATGGCTGCATCAGCACCAAGGAGCTGGGCAAGGTGATGAGGATGCTGGGGCAGAACCCCACCCCCGAGGAGCTGCAGGAGATGATCGACGAGGTGGATGAAGACGGCAGTGGGACGGTGGACTTTGACGAGTTCCTGGTGATGATGGTGAGGTGCATGAAAGACGACAGCAAAGGAAAGACAGAGGAGGAACTGGCGGACCTCTTCCGCATGTTTGACAAGAATGCGGACGGCTACATAGACCTGGAGGAGCTGAAGGGGATGCTGGAGGCCACAGGGGAGGCCATCACCGAGGACGACATCGAGGAGCTCATGAAGGACGGGGACAAGAACAACGACGGGAAAATTGACTATGACGACATCTACGGAAAAGCCGGCGGTTGACTTTTGGACGTCATCGGCAGAACTTCTGAACGACTTTGCAAGACCTAGTTCAATAATCTGATTGCTTGTGTATTTTTTATAACTTTTTGAAATGTCTTGCATTGTTGTAAATACTGTCTGTAACCTGTTTTAGGTGCCCCATACACTGCGTTTGAGTAAATGTAACCAACCGAAATACTCACATTAACAACTCACATATCACTACTTGAACTAAGCATTATTGTTTAACTTCAAATGCATATGAATTTCTGCAGTGCCACAAACAGTTTACAAATCTCTTATTTTTCCAAGTTGCTGATGTTGTGCTGCCGGACAGAATGCTGTTTGAAATACATCCTTTTAGGCATAGGACAGTACATCTGTCCCTGTAAGTCCCTGTAATTATACCATACTTTGATTAGCCCGTTAGTAGTCTAAACATACATTGAAATGCAATGTAGCCACAGCGGCACATTGCAACGGTTGTACGTTTTAACAGATTCCCTCAGGGCCGTTTAATCTGCTGGAGAGCCTGTGGTGGATGTACACACCGTACGTCTGCTTAGAATGTACAGTCAAGTAATAAATGTGTTTGCCAAAGCAACGCCTGGTTTGCCTGA

Function

NR:

description
troponin C, slow skeletal and cardiac muscles isoform X4

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615570.2 False 1304 mRNA 0.47 6 37605201 37610174
XM_021615571.2 True 1202 mRNA 0.48 6 37605201 37610174

Neighbor

gene id symbol gene type direction distance location
LOC110531997 LOC106571907 coding upstream 88283 37510543 ~ 37516918 (+)
raf1a LOC106571905 coding upstream 180925 37379949 ~ 37424276 (+)
gp9 LOC106571903 coding upstream 240353 37362028 ~ 37364848 (+)
iqsec1a LOC106571902 coding upstream 245185 37179890 ~ 37360016 (+)
nup210 LOC106571901 coding upstream 439196 37102639 ~ 37166005 (+)
LOC110517304 LOC106571911 coding downstream 56168 37666342 ~ 37717107 (+)
LOC110532004 LOC106571913 coding downstream 110892 37721066 ~ 37729844 (+)
LOC110532006 LOC106571916 coding downstream 253506 37863680 ~ 37905930 (+)
LOC110532007 LOC106571918 coding downstream 313698 37923872 ~ 37948962 (+)
LOC110532009 LOC106571922 coding downstream 367250 37977424 ~ 37979829 (+)
G799863 NA non-coding upstream 22566 37582177 ~ 37582635 (+)
G799837 NA non-coding upstream 74738 37530017 ~ 37530463 (+)
G799789 NA non-coding upstream 158779 37445144 ~ 37446422 (+)
G799785 NA non-coding upstream 166258 37438691 ~ 37438943 (+)
G799780 NA non-coding upstream 187137 37416551 ~ 37418064 (+)
G799895 LOC105029132 non-coding downstream 18680 37628854 ~ 37630852 (+)
G799983 NA non-coding downstream 173151 37783325 ~ 37783538 (+)
G799984 NA non-coding downstream 173834 37784008 ~ 37784214 (+)
G799985 NA non-coding downstream 174255 37784429 ~ 37784956 (+)
G800563 NA non-coding downstream 186446 37796620 ~ 37796857 (+)
G799858 LOC106571908 other upstream 34790 37567245 ~ 37570411 (+)
G799578 LOC106571900 other upstream 569283 37034418 ~ 37035918 (+)
G799053 NA other upstream 1288396 36313129 ~ 36316805 (+)
G797932 pphln other upstream 2233053 35364988 ~ 35372148 (+)
G797056 NA other upstream 3048579 34555931 ~ 34556622 (+)
G800834 NA other downstream 460042 38070216 ~ 38071433 (+)
G801778 NA other downstream 1177887 38788061 ~ 38788354 (+)
G801851 NA other downstream 1322778 38932952 ~ 38933868 (+)
LOC110532019 LOC106571933 other downstream 1458198 39064150 ~ 39072385 (+)
LOC110531165 LOC106571934 other downstream 1622891 39111355 ~ 39237408 (+)

Expression


Co-expression Network