LOC110532004 (LOC106571913)


Basic Information

Item Value
gene id LOC110532004
gene name LOC106571913
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 37721066 ~ 37729844 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615574.2
TTTCAGACATAGGCTATCACCGTGTGCAATAACGGAACGTACTGCATAATGTTCTACAAGACATCTCCGAGTCAAATCATTTGTTTTgttgatttttaaaaaacttcACACCTCGCTTTATTTTCACTGTAACGTCACACCTCCCTGCACTCTGAGAGCTACCTGAGCCTATCTAGTCAGAAACTGAAAGTATTCTAACTTTAGCCCACTTACTTTCATTTTCGTCTTGAAAGGCGTCAAACCACTCCAACAATGCGTGGTGATTACCTTCATGGGCACATTTAGCTATAATTTAACTAAAATAAATAGTTGAAAAGATTGATATAGCCTTATtgaaacaaatacattttgtttttgccTGTTAGTCTACAGTAGGTACATGTACAAAGAGGGATCATGTGATTGTGAGTAGGCCTACTTGTGGTCTGTACATGGCCAATAATAACTtttgaacattttttttttaagtattcatTTAAAACGTATTTTCAAGATGGAGAAGGCAGGCACGAACATGCATCTGAGAGAGTGGCTGATAGCGCAGATAGACAGTGGAAAGTACGCAGGACTCACCTGGGAGAACCAGAACAAAACTATGTTCAGGATCCCATGGAAACACGCGGCAAAACAGGACTATAATCTGAATGAAGATGCAGCCCTTTTCAAGGCGTGGGCAGTGTATAAGGGGAAGTATCGAGAGGGGAGGGACAAGGCAGACCCCACTTCCTGGAAGACTCGTATCCGCTGTGCCCTCAACAAGAGCACAGACTTCCAGGAGGTCCCAGAGCGCAGCCAGCTGGACGTCTCCGAGCCCTACAAGGCCTACCGTATCCAGACAGCAACACGCAGATGCTCAGaatctCCTGAAACTGAAAGTCAGGCGATAATCCAGACCAGGAGCTCCAGTGCTCACCTGAGGAACACCATCACACACCATCCACAGTTTGGCTGCCATAGGGAATCAGAGGAAAGGGATGGAAGAGTCAACCCCAGTGGGGGTTTGGACCATGTACACTACTGTTCCAACACAGGGACTCCCCAGATGGACAGCTCTGCTACCTTCTCCATATTCAGCCCCACACCACAGATCTCTGACTTCCGTGTGCGGGTGTGTCTGTTCTACCAGGACCAGCTAGTAGTGGATGTGACCACCAGCACCCCAGATGGCTGTTTCATTCTACATGGTCAGGTGCCCCTGGGGAACGAGAGGATCTATGGCCCCTGCACAGCCCAACAGGTCCCCTTCCCCCCTCCAGGGGTCATCCACCTGCCCCCCGGTATCGCTGAGGCCATGGACCGCCTGCTGCCCCACTTGGAGAGGGGTGTCCTGGTGTGGGTGGCTCCAGATGGGGTGTTTATCAAGAGGTTCTGCCAGGGCAGGGTGTATTGGAGTGGCCCTCTGGCCCAGCACACAGACAGGCCCAACAAGCTGAACAGAGAGAGGACCTGCAAGCTGCTGAATGCATCTATATTTCTGAAGGAGCTTCAGGACTTTCTCAAGGGGGCGGGACCCAAACCTCGCTATGAGATTGACCTCTGCTTTGGGGAGGAGTTTCCCGACGCCAGCCCCCTGAAAACCAGGAAGCTGATCATTGCACAGGTAGTGCCCCTGTTCGCTGTCAACCTATTGCAGAGGTGCCAGAGGTTGGGGCCATAAGAGAGACCACGccttcacacacacatcaccatggGGGAGGAGGAAAAGGGTCAGTCACAACCCTCTCCCAGCACTGATGAGACCAGGACCCATCTCTAAGTAAACACTTAGGAACATTCCTCCCTGGTACCCTCCTGTCCTAGGCTAGCCAGCCATGATGAGGGGTGAGTCGAGTGTCGAGACACCCCCAAAAAAGATCTGAATTtgactgcctgtgtaaacacactCATAGTTTTCTTAACCTACAGAAGTTGAAATATTGGTTTTATTTTTGTGTTTGACAATATAATCTACAGATAATGTAATCATTTTgccagtatacagtatgtttgatATCTTTCCTTAATATTTTCCTCATTTACGTTGTGTGAGTAGAGTATGTTTGTACAGTATCTTATATAATATGAAAAACGGCAGCAATTCATTCCTCCATTTACCTCATAATCAACTTGTGATTGAATTGTATGTGCAGCTAGAGTCTAGTAACTATATCAATGGTTTATATCCATTGTGTGATGTATGGAACTGTGACAGACTTATAGACCTGCCTATAGATCAGGTTAATCATTACAAATCTTTAAACCACAAAAAAATGATTGAAATAAGAAACGTTTTATCTTGTGCCATGAATTAAAAATAGTAGTATAAGTGCACACTGCTTGAATGCTCCCATAGTTTAATGGCAACGTTTCAGTCAGGAAAGATGCCATTATT
>XM_021615575.2
TTTCAGACATAGGCTATCACCGTGTGCAATAACGGAACGTACTGCATAATGTTCTACAAGACATCTCCGAGTCAAATCATTTGTTTTgttgatttttaaaaaacttcACACCTCGCTTTATTTTCACTGTAACGTCACACCTCCCTGCACTCTGAGAGCTACCTGAGCCTATCTAGTCAGAAACTGAAAGTATTCTAACTTTAGCCCACTTACTTTCATTTTCGTCTTGAAAGGCGTCAAACCACTCCAACAATGCGTGGTGATTACCTTCATGGGCACATTTAGCTATAATTTAACTAAAATAAATAGTTGAAAAGATTGATATAGCCTTATtgaaacaaatacattttgtttttgccTGTTAGTCTACAGTAGGTACATGTACAAAGAGGGATCATGTGATTATGGAGAAGGCAGGCACGAACATGCATCTGAGAGAGTGGCTGATAGCGCAGATAGACAGTGGAAAGTACGCAGGACTCACCTGGGAGAACCAGAACAAAACTATGTTCAGGATCCCATGGAAACACGCGGCAAAACAGGACTATAATCTGAATGAAGATGCAGCCCTTTTCAAGGCGTGGGCAGTGTATAAGGGGAAGTATCGAGAGGGGAGGGACAAGGCAGACCCCACTTCCTGGAAGACTCGTATCCGCTGTGCCCTCAACAAGAGCACAGACTTCCAGGAGGTCCCAGAGCGCAGCCAGCTGGACGTCTCCGAGCCCTACAAGGCCTACCGTATCCAGACAGCAACACGCAGATGCTCAGaatctCCTGAAACTGAAAGTCAGGCGATAATCCAGACCAGGAGCTCCAGTGCTCACCTGAGGAACACCATCACACACCATCCACAGTTTGGCTGCCATAGGGAATCAGAGGAAAGGGATGGAAGAGTCAACCCCAGTGGGGGTTTGGACCATGTACACTACTGTTCCAACACAGGGACTCCCCAGATGGACAGCTCTGCTACCTTCTCCATATTCAGCCCCACACCACAGATCTCTGACTTCCGTGTGCGGGTGTGTCTGTTCTACCAGGACCAGCTAGTAGTGGATGTGACCACCAGCACCCCAGATGGCTGTTTCATTCTACATGGTCAGGTGCCCCTGGGGAACGAGAGGATCTATGGCCCCTGCACAGCCCAACAGGTCCCCTTCCCCCCTCCAGGGGTCATCCACCTGCCCCCCGGTATCGCTGAGGCCATGGACCGCCTGCTGCCCCACTTGGAGAGGGGTGTCCTGGTGTGGGTGGCTCCAGATGGGGTGTTTATCAAGAGGTTCTGCCAGGGCAGGGTGTATTGGAGTGGCCCTCTGGCCCAGCACACAGACAGGCCCAACAAGCTGAACAGAGAGAGGACCTGCAAGCTGCTGAATGCATCTATATTTCTGAAGGAGCTTCAGGACTTTCTCAAGGGGGCGGGACCCAAACCTCGCTATGAGATTGACCTCTGCTTTGGGGAGGAGTTTCCCGACGCCAGCCCCCTGAAAACCAGGAAGCTGATCATTGCACAGGTAGTGCCCCTGTTCGCTGTCAACCTATTGCAGAGGTGCCAGAGGTTGGGGCCATAAGAGAGACCACGccttcacacacacatcaccatggGGGAGGAGGAAAAGGGTCAGTCACAACCCTCTCCCAGCACTGATGAGACCAGGACCCATCTCTAAGTAAACACTTAGGAACATTCCTCCCTGGTACCCTCCTGTCCTAGGCTAGCCAGCCATGATGAGGGGTGAGTCGAGTGTCGAGACACCCCCAAAAAAGATCTGAATTtgactgcctgtgtaaacacactCATAGTTTTCTTAACCTACAGAAGTTGAAATATTGGTTTTATTTTTGTGTTTGACAATATAATCTACAGATAATGTAATCATTTTgccagtatacagtatgtttgatATCTTTCCTTAATATTTTCCTCATTTACGTTGTGTGAGTAGAGTATGTTTGTACAGTATCTTATATAATATGAAAAACGGCAGCAATTCATTCCTCCATTTACCTCATAATCAACTTGTGATTGAATTGTATGTGCAGCTAGAGTCTAGTAACTATATCAATGGTTTATATCCATTGTGTGATGTATGGAACTGTGACAGACTTATAGACCTGCCTATAGATCAGGTTAATCATTACAAATCTTTAAACCACAAAAAAATGATTGAAATAAGAAACGTTTTATCTTGTGCCATGAATTAAAAATAGTAGTATAAGTGCACACTGCTTGAATGCTCCCATAGTTTAATGGCAACGTTTCAGTCAGGAAAGATGCCATTATT
>XM_021615576.2
TTTCAGACATAGGCTATCACCGTGTGCAATAACGGAACGTACTGCATAATGTTCTACAAGACATCTCCGAGTCAAATCATTTGTTTTgttgatttttaaaaaacttcACACCTCGCTTTATTTTCACTGTAACGTCACACCTCCCTGCACTCTGAGAGCTACCTGAGCCTATCTAGTCAGAAACTGAAAGTATTCTAACTTTAGCCCACTTACTTTCATTTTCGTCTTGAAAGGCGTCAAACCACTCCAACAATGCGTGGTGATTACCTTCATGGGCACATTTAGCTATAATTTAACTAAAATAAATAGTTGAAAAGATTGATATAGCCTTATtgaaacaaatacattttgtttttgccTGTTAGTCTACAGTAGGTACATGTACAAAGAGGGATCATGTGATTGTGAGTAGGCCTACTTGTGGTCTGTACATGGCCAATAATAACTtttgaacattttttttttaagtattcatTTAAAACGTATTTTCAAGATGGAGAAGGCAGGCACGAACATGCATCTGAGAGAGTGGCTGATAGCGCAGATAGACAGTGGAAAGTACGCAGGACTCACCTGGGAGAACCAGAACAAAACTATGTTCAGGATCCCATGGAAACACGCGGCAAAACAGGACTATAATCTGAATGAAGATGCAGCCCTTTTCAAGGCGTGGGCAGTGTATAAGGGGAAGTATCGAGAGGGGAGGGACAAGGCAGACCCCACTTCCTGGAAGACTCGTATCCGCTGTGCCCTCAACAAGAGCACAGACTTCCAGGAGGTCCCAGAGCGCAGCCAGCTGGACGTCTCCGAGCCCTACAAGGCCTACCGTATCCAGACAGCAACACGCAGATGCTCAGaatctCCTGAAACTGAAAGTCAGGCGATAATCCAGACCAGGAGCTCCAGTGCTCACCTGAGGAACACCATCACACACCATCCACAGTTTGGCTGCCATAGGGAATCAGAGGAAAGGGATGGAAGAGTCAACCCCAGTGGGACTCCCCAGATGGACAGCTCTGCTACCTTCTCCATATTCAGCCCCACACCACAGATCTCTGACTTCCGTGTGCGGGTGTGTCTGTTCTACCAGGACCAGCTAGTAGTGGATGTGACCACCAGCACCCCAGATGGCTGTTTCATTCTACATGGTCAGGTGCCCCTGGGGAACGAGAGGATCTATGGCCCCTGCACAGCCCAACAGGTCCCCTTCCCCCCTCCAGGGGTCATCCACCTGCCCCCCGGTATCGCTGAGGCCATGGACCGCCTGCTGCCCCACTTGGAGAGGGGTGTCCTGGTGTGGGTGGCTCCAGATGGGGTGTTTATCAAGAGGTTCTGCCAGGGCAGGGTGTATTGGAGTGGCCCTCTGGCCCAGCACACAGACAGGCCCAACAAGCTGAACAGAGAGAGGACCTGCAAGCTGCTGAATGCATCTATATTTCTGAAGGAGCTTCAGGACTTTCTCAAGGGGGCGGGACCCAAACCTCGCTATGAGATTGACCTCTGCTTTGGGGAGGAGTTTCCCGACGCCAGCCCCCTGAAAACCAGGAAGCTGATCATTGCACAGGTAGTGCCCCTGTTCGCTGTCAACCTATTGCAGAGGTGCCAGAGGTTGGGGCCATAAGAGAGACCACGccttcacacacacatcaccatggGGGAGGAGGAAAAGGGTCAGTCACAACCCTCTCCCAGCACTGATGAGACCAGGACCCATCTCTAAGTAAACACTTAGGAACATTCCTCCCTGGTACCCTCCTGTCCTAGGCTAGCCAGCCATGATGAGGGGTGAGTCGAGTGTCGAGACACCCCCAAAAAAGATCTGAATTtgactgcctgtgtaaacacactCATAGTTTTCTTAACCTACAGAAGTTGAAATATTGGTTTTATTTTTGTGTTTGACAATATAATCTACAGATAATGTAATCATTTTgccagtatacagtatgtttgatATCTTTCCTTAATATTTTCCTCATTTACGTTGTGTGAGTAGAGTATGTTTGTACAGTATCTTATATAATATGAAAAACGGCAGCAATTCATTCCTCCATTTACCTCATAATCAACTTGTGATTGAATTGTATGTGCAGCTAGAGTCTAGTAACTATATCAATGGTTTATATCCATTGTGTGATGTATGGAACTGTGACAGACTTATAGACCTGCCTATAGATCAGGTTAATCATTACAAATCTTTAAACCACAAAAAAATGATTGAAATAAGAAACGTTTTATCTTGTGCCATGAATTAAAAATAGTAGTATAAGTGCACACTGCTTGAATGCTCCCATAGTTTAATGGCAACGTTTCAGTCAGGAAAGATGCCATTATT

Function

NR:

description
interferon regulatory factor 4-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615574.2 False 2371 mRNA 0.46 8 37721066 37729844
XM_021615575.2 False 2282 mRNA 0.47 9 37721066 37729844
XM_021615576.2 True 2335 mRNA 0.46 8 37721066 37729844

Neighbor

gene id symbol gene type direction distance location
LOC110517304 LOC106571911 coding upstream 3959 37666342 ~ 37717107 (+)
tnnc1a LOC106571909 coding upstream 110892 37605201 ~ 37610174 (+)
LOC110531997 LOC106571907 coding upstream 204148 37510543 ~ 37516918 (+)
raf1a LOC106571905 coding upstream 296790 37379949 ~ 37424276 (+)
gp9 LOC106571903 coding upstream 356218 37362028 ~ 37364848 (+)
LOC110532006 LOC106571916 coding downstream 133836 37863680 ~ 37905930 (+)
LOC110532007 LOC106571918 coding downstream 194028 37923872 ~ 37948962 (+)
LOC110532009 LOC106571922 coding downstream 247580 37977424 ~ 37979829 (+)
LOC110532011 LOC106571923 coding downstream 291837 38021681 ~ 38033223 (+)
LOC110532014 LOC106571929 coding downstream 1138425 38868269 ~ 38884647 (+)
G799895 LOC105029132 non-coding upstream 90214 37628854 ~ 37630852 (+)
G799863 NA non-coding upstream 138431 37582177 ~ 37582635 (+)
G799837 NA non-coding upstream 190603 37530017 ~ 37530463 (+)
G799789 NA non-coding upstream 274644 37445144 ~ 37446422 (+)
G799785 NA non-coding upstream 282123 37438691 ~ 37438943 (+)
G799983 NA non-coding downstream 53481 37783325 ~ 37783538 (+)
G799984 NA non-coding downstream 54164 37784008 ~ 37784214 (+)
G799985 NA non-coding downstream 54585 37784429 ~ 37784956 (+)
G800563 NA non-coding downstream 66776 37796620 ~ 37796857 (+)
G800566 NA non-coding downstream 70319 37800163 ~ 37800448 (+)
G799858 LOC106571908 other upstream 150655 37567245 ~ 37570411 (+)
G799578 LOC106571900 other upstream 685148 37034418 ~ 37035918 (+)
G799053 NA other upstream 1404261 36313129 ~ 36316805 (+)
G797932 pphln other upstream 2348918 35364988 ~ 35372148 (+)
G797056 NA other upstream 3164444 34555931 ~ 34556622 (+)
G800834 NA other downstream 340372 38070216 ~ 38071433 (+)
G801778 NA other downstream 1058217 38788061 ~ 38788354 (+)
G801851 NA other downstream 1203108 38932952 ~ 38933868 (+)
LOC110532019 LOC106571933 other downstream 1338528 39064150 ~ 39072385 (+)
LOC110531165 LOC106571934 other downstream 1503221 39111355 ~ 39237408 (+)

Expression


Co-expression Network