LOC110532003 (LOC106571912)


Basic Information

Item Value
gene id LOC110532003
gene name LOC106571912
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 37729990 ~ 37770397 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615573.2
agcagcagcagctgaaGCCTGggtctgagagtgtgtgtgggatgagacccccccccccctcatttccCTCAATTGTCTCTCATCAACACACTCATCaactatctctctgcctctctcttccctcttgcTTATTGAAGACAAGACACACTTGTGTAGAAGTGTGAGAAAGAGGATCGTAGTGCGTACGCATGTgcatacgtgcgtgtgtgtgtgtgtgtttgtgtacatctTTGTGTGTCCACCCCTTTCGCAGTGAGTAAGGCGAGTGGGCGGTAGCAGCAACTGGTCTGCTTATGTGGTGCGATGCATAGCAGACATGTTTCTCACTGCTAGATATTACTCATTTCCTCagccctacacacatacacacacacacacaaacacacagtctcagTTAGACgctcacgcacatacacacactgacacacagaagCTCGCAGCTTCTCAGTGGTCTTGCTGGTGCTATTTTTCACTTATACGGAGCTCTGTGGCATCGTGTGACTGGTAGCTGTTGTTGGTGTTTCTATTGGCGCTGTGGAGGTAAAGTAGGAAGCAGCCTGTGGAGAGGCGCCTGACCCCCCCTGGAGGTTCTTAACCCAGGAGGGCTGCAGCATGTATGACCACCAACACCTGGACAACACTCTGGTCAACAGCCCACTCTAAGgtgaTAGGTCGTTCAGGACTAGGGTGTCAGTGATCTGACAGTGATGTCGTGTCGaggccctcccctctctctgcggCCCTCGTTTTCCCGTGAGTCCCATGTAACCTAGCCGCCCCCGCCCGCCGCTGCTGGCGCTCACCCATGAATCCCAGCCCCGACCGCGGCAAAGAGTGCCTCCCCCCCAAGAAGAGGGAATCCCGGCAGGGCTCGGTTGACCAGCGCACCCTCCTGGACGAGTTCAAACCGCCCGCCTCGCCCCTCAGGACCCGGCCTGCCGGCAGCTcagggagagatgaggggtgCAGGGAGAACAGCGACGAGGCTCTGACGAACCCCCACAGTCTGCtaccctctcccccacctcccctcccaccccctgGTATCCCCCTCCCCCTGCCATGGCACCTGCCTTAtaccccctctgtccctctacccTTCCTCCCAGGccaggtaggagagaggagggggtcagGCTCACCCTCCTGGAGGGATGATCTTCTCCCTTCCCCACTCCCCCATCACTCCAGGTGGCTCCGAGGTGAAATCCCCCTTCCCCTTCCACCCtgctcatcctcttcctccttcaaGAGCCCCTTCCCTGCTGACTCCAGAGAGATGTGGTCCTATTTCAACACAGAACGAAGGGACTAtagctcctctctcttctccccctcccaccTGTTCAGTCAGCCCCCCCTCTACCGTCCTGACACCTCCATGACTGAAGGCAGACACAGATACCTGGGCAAGAGGCCCAACGGGCTGGATGGCCCGGACAGCAGGACTGCCTCTGCCTCCAGGGTGGCGCCCCCCTCAGGAGAGTACGGGAACGAACCCAGCGGCAGGGCCAGGCTGGGCGGCAGCCTCCACGGTTCCCATGCCAACGGGCGGCGGAGACACCAGGAGGATCCCATGGGACGTTCTCAGACGGTTGCGGTTTTCCAAGATTCCCGAGCGCCACCTCCGGAGGGCCCTGACTCACATTCCTCTCTGCAGGACAGGGATCCCCGTGGGACGCCAAAGCCTGGGACCCTCACCCTGATCCCTAGCAGGCCCCAACCCCATCGGGCAGACCCCAGGGCAGGGAGAGGGGAGCTCCTGGACCCCCTGGGGAGCTCTCCGGCTAAGGCCCAGATTTACTACTCCCTGGGGTCGatgtactctaccctacagtcCAACCACCTCAACCCCCAGGCTCAGCCCTTCCCCCTGTACAGCCCCTCAGGCAGCCCTCAGTACGGCCTGCACACCATGAGGAACTCACAGCACTCGCCTCAGGAGCAGCCCAACAGCCACGtcacagagagcgacagagagagggaacgagagcgagacagagaacgagacagACGACgagaactagacagagagagaaaacgtgAACAAGACAGAGACAAccgggagagagacagtgaacgggacagagacaaagacagcgGAGACCTTTCCCCTGGGCGGCAGTACTCACGTCCCCAcgcctcccccctccttcccctcaCGGCCACCTCACcccctgccccccaccaccaccacaaccccccaGCACTCCTACCTCATTTTGCCAAGGGATCTCTGATTGAGCTGGTGGGGGGCCGTCTAAAGCGTGTGGAGGAACTGAGGACGGAGGACTTCCTAAGGAGTGCCAACACCTCCCCGGAGTTCCACCTGAGCACCTGCACCATTCTGCTCATCGCCCCCAGCGACACACACGGCTTCAACCACCTGCAGGTCCTCCTCACAGACCGCAACACTCAGGAGTTACTAACAGTTCTGGTGGAGTACCCGTTCTTCGTTCGGGACCGCGGCTGGTCTTCCTGCTGTCCCCAGAGAACCTCCCAGCTCTACGGCCTATCCTGCCGTCAACTCAGCGAGGGAGACATCTGCCTTGCCCTcaccccttcacacacacctcgcacacacacacactcacacacacgcacagccccGCGGGGCCATCGCACACACACTCGGGCCAGGGCCGGCGCCAGCTCACACAGGGAAGACATGCCCccgcctccccctcctcctcctctttctcatccCTCCCCTGCTCtcgcccctcctcctcttcctctgccccCTGCAGACCCTCCCACCCAGGAGCAGCCACGCTCACGCAAGAGGCGATGGTCCGCCCCCGACCTCCTACCCCCTACTGGAACTACCGAAGCTACCGGGTACTGACAAGACCACCAATTTACCTCACGGCTCCAAGCATAGGAAGCGGCAGTAGAGcttacacacgcgcacacacacacagaaacacacacatgcaagcacaaaCACACCCTCCTTGTCTCTAGAGCACACACATGGCCACACTGTAGAGAGACCACAAGGCAGGGTTGCAGGGAAGGACAAAGAAATGCAACTTTACTTGTGTCCACACTGCTGCCCAAAGTATGAGCCTATAGCCCTCTTTCTtcatccctctttcccctctctccgcttaGCACACCTCTGACAGGGGTAGCTGTCTGAGGACTCCCAGAGAGCTCCACAGTGACAGACGTTGAGTGAGACACTGTTTTTGTTATGGTGGTCCCACACGTCTACTTACTGACAGTGTTTTCTGCAGGGTATCGGTTTTCCATCAGGGTTATGGAAGCAAGCTCTATTGAAGATATCTATcgcagagagatatatatatatatatatatatatatatatatatatatatatatatatatatatataaatatatgactATATATTACATTACAGATGTTCTATAAATATGCTAAACCGATTTAATGCAACCTCTCTGATTGTCACTTTCGTAATGCGTTCTCAGTTTTAGATTTTCTCGCTTCTTCTGATACGAAGTttgactgtcagtcagtcagtcagtccatcggTCAGTGGGTCTGGGCAGGCAAGGTAAATGAATGTATCAGCTACTCTTCGCCTTTTTACTATTCTcgttacgggggggggggggggggggggggtcatgttaATCTCTTGTTCGCCAAGGTATTGCCCTCCAATATGTTCTTAACATTATCTCAGCGGAAGGAAAAACACTAATGAAAATTGCGTAACAGACAATCCTCTCCCACACAGGTGGGTCTGTGTCACTTCGCCTTGACCCCGAGAGTGTTTTTCCATaaaaaaatgaattaaaaaaaGATGGAACGGCAGGAGAGTAATGGTGCTAATAACAGGTTGGAACAGGATGCTTTGTGAACACACACTTGACCcctctgtactgtactctgtaccCCTTCTGTTCCCCTTTCTTTTctccatgtactgtatatgtttgaGCGCAGGGAAAAAAACGATTGAAAGTATTTTAAAACTCAGATACGGGTATCTTTTCTGATTCAGCACACTCTTTCACTTTAgtttttttcaactttttttagtttgtttgtttttcaaaaacaaaaaaaaacctgacctgttttttttttttctttgtaaatGTTATAGCTATAAAAATTGTATATTTTTGAAATTGTGAGTCTGTTATATGATGTTCGCTAGAAAttgtaaaaattaaaaaaagctttatgaa
>XM_036987919.1
agtgagaaagggagagacagagagagagagagagagagagagagagagagagagagagaaagagagagaaagagagaacacacTCAGAGGGAGAGCTAGCTTGAATTGATTTGAGACGGAGAGTGTAAGAACATAGACGAGTAAAGAGCAAAATAGAGTGTGAGACAAGGTGAAAAGGAAAGAACAGAGTGAAGACAGTGAgtcggagacagagagagagagtgagagacagaggggaggggaaaagagagagaggctagcaGTATCAAAACTGGATGTTTCTAAGTGCTTTACTGCTGACTGATCCAATGAGCACTCACTCTGTTATTCACCAAGCAAAGACACCCAGAGAGgtgaTAGGTCGTTCAGGACTAGGGTGTCAGTGATCTGACAGTGATGTCGTGTCGaggccctcccctctctctgcggCCCTCGTTTTCCCGTGAGTCCCATGTAACCTAGCCGCCCCCGCCCGCCGCTGCTGGCGCTCACCCATGAATCCCAGCCCCGACCGCGGCAAAGAGTGCCTCCCCCCCAAGAAGAGGGAATCCCGGCAGGGCTCGGTTGACCAGCGCACCCTCCTGGACGAGTTCAAACCGCCCGCCTCGCCCCTCAGGACCCGGCCTGCCGGCAGCTcagggagagatgaggggtgCAGGGAGAACAGCGACGAGGCTCTGACGAACCCCCACAGTCTGCtaccctctcccccacctcccctcccaccccctgGTATCCCCCTCCCCCTGCCATGGCACCTGCCTTAtaccccctctgtccctctacccTTCCTCCCAGGccaggtaggagagaggagggggtcagGCTCACCCTCCTGGAGGGATGATCTTCTCCCTTCCCCACTCCCCCATCACTCCAGGTGGCTCCGAGGTGAAATCCCCCTTCCCCTTCCACCCtgctcatcctcttcctccttcaaGAGCCCCTTCCCTGCTGACTCCAGAGAGATGTGGTCCTATTTCAACACAGAACGAAGGGACTAtagctcctctctcttctccccctcccaccTGTTCAGTCAGCCCCCCCTCTACCGTCCTGACACCTCCATGACTGAAGGCAGACACAGATACCTGGGCAAGAGGCCCAACGGGCTGGATGGCCCGGACAGCAGGACTGCCTCTGCCTCCAGGGTGGCGCCCCCCTCAGGAGAGTACGGGAACGAACCCAGCGGCAGGGCCAGGCTGGGCGGCAGCCTCCACGGTTCCCATGCCAACGGGCGGCGGAGACACCAGGAGGATCCCATGGGACGTTCTCAGACGGTTGCGGTTTTCCAAGATTCCCGAGCGCCACCTCCGGAGGGCCCTGACTCACATTCCTCTCTGCAGGACAGGGATCCCCGTGGGACGCCAAAGCCTGGGACCCTCACCCTGATCCCTAGCAGGCCCCAACCCCATCGGGCAGACCCCAGGGCAGGGAGAGGGGAGCTCCTGGACCCCCTGGGGAGCTCTCCGGCTAAGGCCCAGATTTACTACTCCCTGGGGTCGatgtactctaccctacagtcCAACCACCTCAACCCCCAGGCTCAGCCCTTCCCCCTGTACAGCCCCTCAGGCAGCCCTCAGTACGGCCTGCACACCATGAGGAACTCACAGCACTCGCCTCAGGAGCAGCCCAACAGCCACGtcacagagagcgacagagagagggaacgagagcgagacagagaacgagacagACGACgagaactagacagagagagaaaacgtgAACAAGACAGAGACAAccgggagagagacagtgaacgggacagagacaaagacagcgGAGACCTTTCCCCTGGGCGGCAGTACTCACGTCCCCAcgcctcccccctccttcccctcaCGGCCACCTCACcccctgccccccaccaccaccacaaccccccaGCACTCCTACCTCATTTTGCCAAGGGATCTCTGATTGAGCTGGTGGGGGGCCGTCTAAAGCGTGTGGAGGAACTGAGGACGGAGGACTTCCTAAGGAGTGCCAACACCTCCCCGGAGTTCCACCTGAGCACCTGCACCATTCTGCTCATCGCCCCCAGCGACACACACGGCTTCAACCACCTGCAGGTCCTCCTCACAGACCGCAACACTCAGGAGTTACTAACAGTTCTGGTGGAGTACCCGTTCTTCGTTCGGGACCGCGGCTGGTCTTCCTGCTGTCCCCAGAGAACCTCCCAGCTCTACGGCCTATCCTGCCGTCAACTCAGCGAGGGAGACATCTGCCTTGCCCTcaccccttcacacacacctcgcacacacacacactcacacacacgcacagccccGCGGGGCCATCGCACACACACTCGGGCCAGGGCCGGCGCCAGCTCACACAGGGAAGACATGCCCccgcctccccctcctcctcctctttctcatccCTCCCCTGCTCtcgcccctcctcctcttcctctgccccCTGCAGACCCTCCCACCCAGGAGCAGCCACGCTCACGCAAGAGGCGATGGTCCGCCCCCGACCTCCTACCCCCTACTGGAACTACCGAAGCTACCGGGTACTGACAAGACCACCAATTTACCTCACGGCTCCAAGCATAGGAAGCGGCAGTAGAGcttacacacgcgcacacacacacagaaacacacacatgcaagcacaaaCACACCCTCCTTGTCTCTAGAGCACACACATGGCCACACTGTAGAGAGACCACAAGGCAGGGTTGCAGGGAAGGACAAAGAAATGCAACTTTACTTGTGTCCACACTGCTGCCCAAAGTATGAGCCTATAGCCCTCTTTCTtcatccctctttcccctctctccgcttaGCACACCTCTGACAGGGGTAGCTGTCTGAGGACTCCCAGAGAGCTCCACAGTGACAGACGTTGAGTGAGACACTGTTTTTGTTATGGTGGTCCCACACGTCTACTTACTGACAGTGTTTTCTGCAGGGTATCGGTTTTCCATCAGGGTTATGGAAGCAAGCTCTATTGAAGATATCTATcgcagagagatatatatatatatatatatatatatatatatatatatatatatatatatatatataaatatatgactATATATTACATTACAGATGTTCTATAAATATGCTAAACCGATTTAATGCAACCTCTCTGATTGTCACTTTCGTAATGCGTTCTCAGTTTTAGATTTTCTCGCTTCTTCTGATACGAAGTttgactgtcagtcagtcagtcagtccatcggTCAGTGGGTCTGGGCAGGCAAGGTAAATGAATGTATCAGCTACTCTTCGCCTTTTTACTATTCTcgttacgggggggggggggggggggggggtcatgttaATCTCTTGTTCGCCAAGGTATTGCCCTCCAATATGTTCTTAACATTATCTCAGCGGAAGGAAAAACACTAATGAAAATTGCGTAACAGACAATCCTCTCCCACACAGGTGGGTCTGTGTCACTTCGCCTTGACCCCGAGAGTGTTTTTCCATaaaaaaatgaattaaaaaaaGATGGAACGGCAGGAGAGTAATGGTGCTAATAACAGGTTGGAACAGGATGCTTTGTGAACACACACTTGACCcctctgtactgtactctgtaccCCTTCTGTTCCCCTTTCTTTTctccatgtactgtatatgtttgaGCGCAGGGAAAAAAACGATTGAAAGTATTTTAAAACTCAGATACGGGTATCTTTTCTGATTCAGCACACTCTTTCACTTTAgtttttttcaactttttttagtttgtttgtttttcaaaaacaaaaaaaaacctgacctgttttttttttttctttgtaaatGTTATAGCTATAAAAATTGTATATTTTTGAAATTGTGAGTCTGTTATATGATGTTCGCTAGAAAttgtaaaaattaaaaaaagctttatgaa
>TU911096
gagagagagagagagagagaaagagagagaaagagagaacacacTCAGAGGGAGAGCTAGCTTGAATTGATTTGAGACGGAGAGTGTAAGAACATAGACGAGTAAAGAGCAAAATAGAGTGTGAGACAAGGTGAAAAGGAAAGAACAGAGTGAAGACAGTGAgtcggagacagagagagagagtgagagacagaggggaggggaaaagagagagaggctagcaGTATCAAAACTGGATGTTTCTAAGTGCTTTACTGCTGACTGATCCAATGAGCACTCACTCTGTTATTCACCAAGCAAAGACACCCAGAGAGgtgaTAGGTCGTTCAGGACTAGGGTGTCAGTGATCTGACAGTGATGTCGTGTCGaggccctcccctctctctgcggCCCTCGTTTTCCCGTGAGTCCCATGTAACCTAGCCGCCCCCGCCCGCCGCTGCTGGCGCTCACCCATGAATCCCAGCCCCGACCGCGGCAAAGAGTGCCTCCCCCCCAAGAAGAGGGAATCCCGGCAGGGCTCGGTTGACCAGCGCACCCTCCTGGACGAGTTCAAACCGCCCGCCTCGCCCCTCAGGACCCGG

Function

NR:

description
genetic suppressor element 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615573.2 False 4187 mRNA 0.54 3 37729990 37737860
XM_036987919.1 False 3876 mRNA 0.54 3 37729990 37770397
TU911096 True 584 lncRNA 0.55 2 37733495 37770358

Neighbor

gene id symbol gene type direction distance location
LOC110531161 NA coding downstream 88084 37638412 ~ 37641906 (-)
LOC110532001 LOC106571910 coding downstream 95848 37628778 ~ 37634142 (-)
LOC110531998 LOC106571908 coding downstream 148186 37567212 ~ 37581804 (-)
LOC110531996 LOC100136520 coding downstream 253441 37441559 ~ 37476549 (-)
LOC100505416 pparg coding downstream 293796 37429893 ~ 37436194 (-)
LOC110531162 LOC106571919 coding upstream 178343 37948740 ~ 37953210 (-)
LOC110531163 LOC102784363 coding upstream 183213 37953610 ~ 37961387 (-)
LOC110532008 LOC106571920 coding upstream 190742 37961139 ~ 37977349 (-)
LOC110532012 cdh4 coding upstream 282318 38052715 ~ 38440830 (-)
LOC110532016 NA coding upstream 774807 38545204 ~ 38548047 (-)
G800438 LOC106571909 non-coding downstream 119695 37605242 ~ 37610295 (-)
G800436 NA non-coding downstream 165899 37563878 ~ 37564091 (-)
G800416 NA non-coding downstream 202900 37526742 ~ 37527090 (-)
G800389 NA non-coding downstream 203560 37477727 ~ 37526430 (-)
G800553 NA non-coding upstream 1523 37771920 ~ 37772129 (-)
G800558 NA non-coding upstream 13609 37784006 ~ 37784304 (-)
G800559 NA non-coding upstream 14063 37784460 ~ 37785145 (-)
G800656 NA non-coding upstream 55537 37825934 ~ 37829157 (-)
G800721 NA non-coding upstream 147138 37917535 ~ 37917914 (-)
G800318 NA other downstream 384843 37344395 ~ 37345147 (-)
LOC110531982 LOC106571893 other downstream 822342 36827882 ~ 36907700 (-)
G798993 NA other downstream 1579353 36150338 ~ 36150637 (-)
LOC110531979 brpf1 other downstream 1750875 35948544 ~ 35979307 (-)
LOC118966032 LOC106571870 other downstream 2208658 35492026 ~ 35521884 (-)
LOC110532015 LOC106566767 other upstream 1070812 38839265 ~ 38841685 (-)
G802100 NA other upstream 1196059 38966456 ~ 38996032 (-)
G802138 NA other upstream 1280133 39050530 ~ 39061381 (-)
G802149 LOC106581475 other upstream 1304084 39074481 ~ 39074720 (-)
G802602 LOC106571943 other upstream 1610353 39380750 ~ 39383210 (-)

Expression


Co-expression Network