LOC110532006 (LOC106571916)


Basic Information

Item Value
gene id LOC110532006
gene name LOC106571916
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 37863680 ~ 37905930 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615578.2
ctctcacacatacacaatctctctttctcacgcacacacatactTGGTGAGGACACATGTCTAGGACAAAGGAGGGGGGAAACGACTGTGTCAGATGCTCAGTGAGCCTAGAGGGATAGTGGGCCGTCCCTTACATGCTGCCTGTACCAAATGTCTCAAGTACCTCTGCCACATTTGAGTTCTTGACACTTACCCAAAGGATATCAAGAGGAACGGTCCAAAATGGCGAAGGTGTCCTGTCTTCTGCTGACGGTCTCCATGACGGTTGCATTAGCACTGGCACATGACACTGGCAACTATACACTGAACAAGCGGGAAAAGAGGGAGCTGCTGCTGCGTTCCAAAAGAAGGTGGGTCCTATCCACAATTGAGCTAGTGGAGGAGGACCCTGGACCTTTCCCTAAATTCGCCACACAGATGTTCAACGATAAAACGGCTCTTTTCAAAAGTCATCAGTTCCGTTTATCTGGAACTGGAGTGACCGAGGAACCGGTGGACGTGTTCTCCATCGACGACGAGGATGGAGTGGTGTACGTACACAAGCCTATCGACAGGGAGACATACCCCTTCTTTCATATTATGTTTGACATCATTAACAAGGAGACTGGTGAGCTTGTGGACAAGACTCTGACGTTCGACGTGGCGATTACGGACATCAATGACAACGCCCCTTACTTTGAGCACCCTGTCATGAAAGCCAGTGTAAAAGAGAACATGCCAGAGGGGTATCTGCCAGTGCCTCTGACAGCCAGGGACATGGATCAGGTGAACACACAGAACTCCAACATCAGTGTAAGGGTGTTGTCTCAGGAGCCAGCCGAGCCCAAGATCAACCTGAAGCAGGTTGAGGGCACCAAGATGAGCCAGCTCACCTTCACCGGCTGCTTTGACTATGACAAAGTAAAGATGTATAAAGTGGTTGTTGAAGCTCGGGATCATGGGATACCAGCCCTGTCCTCAACTGCAGTGGTCAACCTCCACATAATGGACTCCAACACTCACCAGCCAGTGTTCAAAGACAAGACCTACAATACTCACATGATGGAGATGGAATCCAATAAAGAGATACTCCGAGTGGCTGTGACTGATGCAGACACCCCCAACACCCCCGCATGGCGAGCCGTTTACTCCATTGTGAAGGGGAACGAGGAAGGAAACTATAAGATTGAGACCGACCCCAAGACCAACGAGGGTATACTGACTGTCATCAAGGGGAAGGATTTTGAGAAGACAACGTTGACCAATGTGCAGATCGCCGTGGAGAACGAGGAGCCTTTGTTTGTGTGTAGCTCCGGCGGGGCCGTGTCCCATGGTAAAACCCTGACTGTGCCCCCCCAGACAGTCAACGTGACTGTGAAGGTGATTGACGTGAACGACCCCCCGGTGTTTGACAATAAAGTGACAAACGTGTATGGAATGGAAGAGCAGGAGGTGGGAAAGGTGCTGTACAAACCCAAAGTCACCGACGTTGACTCAGATGTGGAAAAAATCAGGTATGAGTTAGTTGAGGACCCAGCAGGCTGGTTCACCATAGACCCCAAGACCGGAGAGGTTACTACAGTGAAGAAGATGGACCGGGAGTCACCTTACGTCGACAAAGACAACATCTACACTATTCTAATCCAAGCCATAGACGACgGGGAGCCCCCTGCCACGGCTACAGGCACCATTCTGGTCCACCTGGGGGATATCAATGACAACACGCCCTATGTGGTGGAGAAGAAGCTAGTGATGTGTGGTAACAAGGTTATTGTGCCGGTATCAGACAAGGACAACCATCCCTTTGGATGTCCCTGTTTCCTCTCCCTGGGAGCGGACAACGGAGACAAAGCACTGAAGAGCCGCTGGAAACTGGACCCTGCCACTGGTGTGGAGGCGGGTCTGGTCAGTCTCAAGAGTCTGCCGTACGGTAACTACACAGTACCTCTGGTGATCCAGGACCAGCAAGGGATGGTTGTAAATGACACTGTCGAGGTTATGGTGTGTGACTGTGGGGGAGGGGACAAGTGTAGGGCCTCTCTACCCCGGACCTCCAGCCTGGGCTTGGCCGCTATAGGACTACTGCTGGCTGGACTGCTTCTCCTCTTACTGCTGCTGCTTTTCCTCCTGCTGTGTGAGTGTGGCGGTAAGACGTTCACACACCTCCCCCTCAATCTGCAAGACGAGGGAAACCAGACTCTTATCAACTACAATGAGGAGGGAGGGGGCTCCGCATGCaagGGTGAGCCCATGTTGATCTTGGCTCGCACCACTTCCAACCATGTAGCCGTGGACGTGGTAGATGGAATGAAGCAGGCCACCACAGGCATAAAGgTCACCAAGCTATCCTCCTCAGGAGGGGAAGGGATCTCAGGATGGGGAACATTCCAGAGAATGAGCGAAGCCAACGGAACTCTGAGAAGCCAGGATGGGCAAGGCAAGTACCAGGCGTGGACTGCAAGCAGGAACAATACCATGAGGAGTAACTCTTCGAAGTACTCACGCTCCTTCGGCATGCTGTCGGACCAGCACATTTCAGAGCACATAGACCGGAGGCTGTATATGATTGGAGATGAGGTGGACTACCAACCCTACGAGTACAGATACGAGGGGAGAGGCAGCAAGTGCCAGTCGCTGGATGAGCTGTCGCTAAGTAACCAGGGGGATGACTTGAAGTTCCTAGGGGACCTGGGGTCAAAGTTCAACACCCTGGGGGGCATCTGTCGCCAGGACATGTAGGAGAGGAAAATTAGggtgtagacacacacacctggctgGACTGGGAAATGGTGCTTCTTAGACATGTCTGTCATCGTCCCCTGTTTGAGGTGAATGGGGGGGGGTGACCTATCAGTTGAAGAAGACACAGCTACACCAAACTTCCTCCATTGTGATTTTGGATCAAGCTTTGCATTATCAACATCAGTGGGGCATTTTCTTACAGACCGAAACTGTTGTGGATTGGCTTTTATCCAGAAGAAGGACTGGGAGAGACTGCTGATATTTTTGTCTGACACAATGAATGATGAACTTACTGTACTGAATAAACCGTATCATGCTCGGATGGCTTTATGGACTTCGGTTTTGACAGGGCTGGGGTGTGTTTGTATGGCGttttgttatgttatgtgtttTTTTATCATCGCCACGCTTCACAGTATTTTCAACAGAATCGTATAATCACTTGATCTACTGGTTATGCCGGAATGAGATTTACTTCAATGCTATGACTTCGATAGAAATTTCGAAATGTCAA
>XM_021615577.2
acacatacacaatctctctttctcacgcacacacatactTGGTGAGGACACATGTCTAGGACAAAGGAGGGGGGAAACGACTGTGTCAGATGCTCAGTGAGCCTAGAGGGATAGTGGGCCGTCCCTTACATGCTGCCTGTACCAAATGTCTCAAGTACCTCTGCCACATTTGAGTTCTTGACACTTACCCAAAGGATATCAAGAGGAACGGTCCAAAATGGCGAAGGTGTCCTGTCTTCTGCTGACGGTCTCCATGACGGTTGCATTAGCACTGGCACATGACACTGGCAACTATACACTGAACAAGCGGGAAAAGAGGGAGCTGCTGCTGCGTTCCAAAAGAAGGTGGGTCCTATCCACAATTGAGCTAGTGGAGGAGGACCCTGGACCTTTCCCTAAATTCGCCACACAGATGTTCAACGATAAAACGGCTCTTTTCAAAAGTCATCAGTTCCGTTTATCTGGAACTGGAGTGACCGAGGAACCGGTGGACGTGTTCTCCATCGACGACGAGGATGGAGTGGTGTACGTACACAAGCCTATCGACAGGGAGACATACCCCTTCTTTCATATTATGTTTGACATCATTAACAAGGAGACTGGTGAGCTTGTGGACAAGACTCTGACGTTCGACGTGGCGATTACGGACATCAATGACAACGCCCCTTACTTTGAGCACCCTGTCATGAAAGCCAGTGTAAAAGAGAACATGCCAGAGGGGTATCTGCCAGTGCCTCTGACAGCCAGGGACATGGATCAGGTGAACACACAGAACTCCAACATCAGTGTAAGGGTGTTGTCTCAGGAGCCAGCCGAGCCCAAGATCAACCTGAAGCAGGTTGAGGGCACCAAGATGAGCCAGCTCACCTTCACCGGCTGCTTTGACTATGACAAAGTAAAGATGTATAAAGTGGTTGTTGAAGCTCGGGATCATGGGATACCAGCCCTGTCCTCAACTGCAGTGGTCAACCTCCACATAATGGACTCCAACACTCACCAGCCAGTGTTCAAAGACAAGACCTACAATACTCACATGATGGAGATGGAATCCAATAAAGAGATACTCCGAGTGGCTGTGACTGATGCAGACACCCCCAACACCCCCGCATGGCGAGCCGTTTACTCCATTGTGAAGGGGAACGAGGAAGGAAACTATAAGATTGAGACCGACCCCAAGACCAACGAGGGTATACTGACTGTCATCAAGGGGAAGGATTTTGAGAAGACAACGTTGACCAATGTGCAGATCGCCGTGGAGAACGAGGAGCCTTTGTTTGTGTGTAGCTCCGGCGGGGCCGTGTCCCATGGTAAAACCCTGACTGTGCCCCCCCAGACAGTCAACGTGACTGTGAAGGTGATTGACGTGAACGACCCCCCGGTGTTTGACAATAAAGTGACAAACGTGTATGGAATGGAAGAGCAGGAGGTGGGAAAGGTGCTGTACAAACCCAAAGTCACCGACGTTGACTCAGATGTGGAAAAAATCAGGTATGAGTTAGTTGAGGACCCAGCAGGCTGGTTCACCATAGACCCCAAGACCGGAGAGGTTACTACAGTGAAGAAGATGGACCGGGAGTCACCTTACGTCGACAAAGACAACATCTACACTATTCTAATCCAAGCCATAGACGACgGGGAGCCCCCTGCCACGGCTACAGGCACCATTCTGGTCCACCTGGGGGATATCAATGACAACACGCCCTATGTGGTGGAGAAGAAGCTAGTGATGTGTGGTAACAAGGTTATTGTGCCGGTATCAGACAAGGACAACCATCCCTTTGGATGTCCCTGTTTCCTCTCCCTGGGAGCGGACAACGGAGACAAAGCACTGAAGAGCCGCTGGAAACTGGACCCTGCCACTGGTGTGGAGGCGGGTCTGGTCAGTCTCAAGAGTCTGCCGTACGGTAACTACACAGTACCTCTGGTGATCCAGGACCAGCAAGGGATGGTTGTAAATGACACTGTCGAGGTTATGGTGTGTGACTGTGGGGGAGGGGACAAGTGTAGGGCCTCTCTACCCCGGACCTCCAGCCTGGGCTTGGCCGCTATAGGACTACTGCTGGCTGGACTGCTTCTCCTCTTACTGCTGCTGCTTTTCCTCCTGCTGTGTGAGTGTGGCGGTAAGACGTTCACACACCTCCCCCTCAATCTGCAAGACGAGGGAAACCAGACTCTTATCAACTACAATGAGGAGGGAGGGGGCTCCGCATGCaagGGTGAGCCCATGTTGATCTTGGCTCGCACCACTTCCAACCATGTAGCCGTGGACGTGGTAGATGGAATGAAGCAGGCCACCACAGGCATAAAGCTTACTCAGGAGACCAATGAGATGACCCAAGAGACCAATGAGACATACAGAACCACAGGGAGGACCGTGgTCACCAAGCTATCCTCCTCAGGAGGGGAAGGGATCTCAGGATGGGGAACATTCCAGAGAATGAGCGAAGCCAACGGAACTCTGAGAAGCCAGGATGGGCAAGGCAAGTACCAGGCGTGGACTGCAAGCAGGAACAATACCATGAGGAGTAACTCTTCGAAGTACTCACGCTCCTTCGGCATGCTGTCGGACCAGCACATTTCAGAGCACATAGACCGGAGGCTGTATATGATTGGAGATGAGGTGGACTACCAACCCTACGAGTACAGATACGAGGGGAGAGGCAGCAAGTGCCAGTCGCTGGATGAGCTGTCGCTAAGTAACCAGGGGGATGACTTGAAGTTCCTAGGGGACCTGGGGTCAAAGTTCAACACCCTGGGGGGCATCTGTCGCCAGGACATGTAGGAGAGGAAAATTAGggtgtagacacacacacctggctgGACTGGGAAATGGTGCTTCTTAGACATGTCTGTCATCGTCCCCTGTTTGAGGTGAATGGGGGGGGGTGACCTATCAGTTGAAGAAGACACAGCTACACCAAACTTCCTCCATTGTGATTTTGGATCAAGCTTTGCATTATCAACATCAGTGGGGCATTTTCTTACAGACCGAAACTGTTGTGGATTGGCTTTTATCCAGAAGAAGGACTGGGAGAGACTGCTGATATTTTTGTCTGACACAATGAATGATGAACTTACTGTACTGAATAAACCGTATCATGCTCGGATGGCTTTATGGACTTCGGTTTTGACAGGGCTGGGGTGTGTTTGTATGGCGttttgttatgttatgtgtttTTTTATCATCGCCACGCTTCACAGTATTTTCAACAGAATCGTATAATCACTTGATCTACTGGTTATGCCGGAATGAGATTTACTTCAATGCTATGACTTCGATAGAAATTTCGAAATGTCAA

Function

NR:

description
cadherin-like protein 26 isoform X1

GO: NA

KEGG:

id description
K22658 CDH26; cadherin 26

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615578.2 False 3235 mRNA 0.51 18 37863680 37905930
XM_021615577.2 True 3299 mRNA 0.51 19 37863685 37905930

Neighbor

gene id symbol gene type direction distance location
LOC110532004 LOC106571913 coding upstream 133836 37721066 ~ 37729844 (+)
LOC110517304 LOC106571911 coding upstream 146573 37666342 ~ 37717107 (+)
tnnc1a LOC106571909 coding upstream 253506 37605201 ~ 37610174 (+)
LOC110531997 LOC106571907 coding upstream 346762 37510543 ~ 37516918 (+)
raf1a LOC106571905 coding upstream 439404 37379949 ~ 37424276 (+)
LOC110532007 LOC106571918 coding downstream 17942 37923872 ~ 37948962 (+)
LOC110532009 LOC106571922 coding downstream 71494 37977424 ~ 37979829 (+)
LOC110532011 LOC106571923 coding downstream 115751 38021681 ~ 38033223 (+)
LOC110532014 LOC106571929 coding downstream 962339 38868269 ~ 38884647 (+)
LOC110532013 LOC106571930 coding downstream 980694 38886624 ~ 38909718 (+)
G800589 NA non-coding upstream 34447 37825979 ~ 37829233 (+)
G800583 NA non-coding upstream 48822 37814445 ~ 37814858 (+)
G800576 NA non-coding upstream 57425 37805966 ~ 37806255 (+)
G800566 NA non-coding upstream 63232 37800163 ~ 37800448 (+)
G800563 NA non-coding upstream 66823 37796620 ~ 37796857 (+)
G800705 NA non-coding downstream 1337 37907267 ~ 37907580 (+)
G800727 NA non-coding downstream 14179 37920109 ~ 37920367 (+)
G800776 NA non-coding downstream 64528 37970458 ~ 37973015 (+)
G800789 NA non-coding downstream 83434 37989364 ~ 37989649 (+)
G800826 NA non-coding downstream 144403 38050333 ~ 38055272 (+)
G799858 LOC106571908 other upstream 293269 37567245 ~ 37570411 (+)
G799578 LOC106571900 other upstream 827762 37034418 ~ 37035918 (+)
G799053 NA other upstream 1546875 36313129 ~ 36316805 (+)
G797932 pphln other upstream 2491532 35364988 ~ 35372148 (+)
G797056 NA other upstream 3307058 34555931 ~ 34556622 (+)
G800834 NA other downstream 164286 38070216 ~ 38071433 (+)
G801778 NA other downstream 882131 38788061 ~ 38788354 (+)
G801851 NA other downstream 1027022 38932952 ~ 38933868 (+)
LOC110532019 LOC106571933 other downstream 1162442 39064150 ~ 39072385 (+)
LOC110531165 LOC106571934 other downstream 1327135 39111355 ~ 39237408 (+)

Expression


Co-expression Network