LOC110532007 (LOC106571918)


Basic Information

Item Value
gene id LOC110532007
gene name LOC106571918
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 37923872 ~ 37948962 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615579.2
ACAAGTCTCTTCAGCTGTGTTTTCACCTCAGGTGGACTGTGTCTGTACTGTATTTAGGGACAAGCCAACACTCTGTGGTATCGGAGTACCATATCAGCTCACACATCTGGATACAGTATGGGGACTAGAGGTCTGCTCATGACACTGTGTCTGGGGATTGTCAGTGTGTCCTCTGAAGAGTTACTGCATCGACAGAAGAGAATCTGGATTGTAGACTCTTTTAAGATAGAAGAGGCGAGGCCCGGACCTTATCCTTATGTACTGGGGACCGTTCAGATTGAGAAGGCGTTCCGTGTGGGTTTCCATCTACATGGTCAAGGGGTTGATCTGGAACCCAGAGGAAAACTGTCCATCAACACAGACACCGGAGATATCGTAGTTCATGGAGAACTAGACTACGAGCTTTACCAGAAACTTAAGCTGACATTTGAGGCCCGAGATACATCCAATAATGCATTGGACACCCGGCTGGGAGTGGAGGTGGAGATTCTAGACATCAATGACAACCCCCCAGTTTTCCAGAGTAACACTTACACCATCAACCTGAAAGAGTCTACTTCACAGGGAGATTTTGTGACAGCTGTAGTTGCAACAGATAAAGATCAAAGCAACACAAACAATGGCACCTTTGACCTGAAGATTGTCTCCATCACCCCTACGCCCCCAGACAACCTGGAGTTCTTCCTTGAGCAAAGTGGTCCAACTGGAATCATCAAATTCAAAGGGTGTCTGGAGCACGAGAAATCAAAGAAATACACCATCCTGGTGGAGGCTAAAGATCGTGGAGAGGTGGTTCAGCTCTCCAGCACCTGTACAAACATCATCACTATAGAGGATGGAAACAACCATCTGCCTGTCTTCACTGGGCAAACGGGTGCAGGAAGCatcaaggagagagacagaggtgatgTACCAATTCTTCGGCTCCAGGTTTCAGACCAAGATACCAAAGGTACTGTAGCCTGGAAGGCCAAATACACTATCCACGGAGACAAGGACCAGAACTTCAGAATCACCACTGATCCAGACACCAACGAAGGAGTCTTGTTTGTTGAAAAGCCTCTGGACTACGAGGATGGCTCTCAGAGGAACCTGTCAGTCAGTGTAGAGAACGAGGCGCCCTACTTCTCTTGTAAGGTCAAAGGTCGTCCTGCCATGGGCCTGTGGAATGTGGTCACCACAGGGGGGGTAACTTTGACAGGTGAACAGCCCCTGCTGTCCACCCGCCAGGTGACGGTCACGGTGGAGGACATCAACGACCCGCCCATCTTCACCCCCACCATCAAAAATGTGACGGTGGAGGAGAATGTGGAGGTTGGTTGGTACCTGGAGACGTTCACTGCCATCGATCTGGACAGGAACCATGCCAACACCTTCAAGTACGTGAAAGAAAAGGACCCTTCTGACTGTGTGGCAGTAGACACAAAGACCGGCAAAATAACCACAACTAAGATCTTAGACCGAGAGTCACCTTATGTGAAGAACAATGTCTATCAAGTGACAGTGATTGCTATTGATGATGGCCAGCCTCCCATGACCGGAACTGGAACGCTCAACATCCACCTGAAGGACCAGAATGACAACCTTCCGGAGCTTGAGATGGCCACCATGGACATGTGTCTTTCAGATGAGCACACCGAGGTCAACATCACAGCCTACGACCTGGATGAAGAACCCTACAGCGGACCCTTCTACTTCCAGCTCCAAGGGGACGATGTCAAGGGCAAGTGGAGGATTGACCCCGACAATGGCTACACAGTGAACCTGGTGAAGGAGAACACAGTGTACGCAGGTCACCACGAGCTGCTGCTGAAGGTGTTTGACCTGCAGGGTCAGGGTGCCCTCCACAACCTGTCTGTTACCGTGTGTGACTGCTCCAGGGTGGCCAGCTGCCGCATGCGCAGGGCCACTGGATCCAAGATTGGAGAGAGTGCTGTAGGGATTGTCATTGCTGCCATGTTGCTACTACTAGGTTTTCTACTGTTGGCTCTCCTGATGACTTCTAAGAGAGATCTGAAGCTGATCCCTCTCGATGAAATCTCTGGAGAACATCTGCTCAAATCTAACATTGAGATCCCAGGAACTGATTGCAAGGTGCCTACGGCTACCATACTCCAAGTGGACAGCCAGGTGGAAACGAAAGCTGCTTTTCAACCCACCAAGAAGATGTTGGCTGTACAGAAGTCAGCCAGTATGCGAGCACAGGTACGTTCAGGATATTCCAAGTATTCCTCCTCCTACCAAGAGCAACAACAGGGAGAGTTTCAACGAGGAACCACCCTGCGCAAGAGTGCGCCCACAAAATTACGCTCCAACGGTTATTATGAACAGGTGTCAATGGTGAGCAGATCAATGAAGACAAGAACAAGATACTCCTCATGGGAAGAAGATAATTGTCTCGACAAATCCGGGCACTTGATGACCCAACTGAATCAGAGGATGTACACCCTGCAAGTTCAAGGAGAAGAGCTGGGGGACTATGCCCCGCACCCCTACGTTGAAGAGGGGGACCTAGAGACAGACCTCCAGCTGGATGCTATTTCCATCCCTGAGACCCTCTTCGACCAGGACACGCTCCTCTACCTGGGCCCCAGGTTCAACACCCTGGCCTCCATCTGCAACACCGCAGACCTCAGCGCATCCTAAGCCCATCTTGCCCTCACCCTCTGGGGCAAAAGGCTCTGCCAGGACTGGCTAGATAGCATTGGCATAGCAGGCTAGGTCACCGGCCACATTCCTGGATTATAAACTGGACTGGATCACTCATTCTTCAAATGAGGTAGAACAGCAAACTTGCTCTTGCAAAATCTGGAAGcagtgtcattttttttttttttttacaaaaaccaTCAAATGCACACAGGACTATGAAGATCAGTGATCAATCAATACAAAGACCAAGATGGAACTCAGTGTTGAAAGGAGAACAATGAAATCGaccactgagaacacacacagagagagacatgtagtggGAAAATACTTGCATGGCATTGACTTGGCTCTGTGCTTTTATGAATGCGATGGCTGCAATTTAGAGGTGAATTAACAGTGAACATACCACACCATCGCTTACCTCTTTATTCTTCAGAAAATACATTGAGTCAGAATAGTGTAATATTGTTTTCTAcgatggttatgatgatgattcccaaatcaaattgtatttttcacacgcttcgtaaacaacaggtgtagactaacagtgaactgcttacttacgggcccttcccaacaatgcagtgaaaCAATATATACATAGTAGAAAAAAATTGAACAAAAAGtataaaaacaataacacaaggaataaatagaCAAGTAATTaaagcttggctatatacacggattaccagtaccgagtcaatgtgcaggggtacgaagtaattgaggtagatatgtacatacaggtagggatatagtgactaggcaacaggatagataataaacagtaactaACAGCAGTGTATGGGGTGAGTCAAAAGAGATTAGCGCAAAAATAATCAATGCAGATAttccgggtagctattggttaactgtTTAACTATTTAGAGGTCTtttagcttgggggtagaagctgttcagggtcctgttggttccagacttgccgtgcggtagcagagagaacagtctatgatttgggtggctggagtctttgacatttcTTAGGgtattcctctgacaccgcctggtatagaggtcctggatggcagggagctcggccccagtgatgtgctggtccgtacacactaccctctgtagcgctttgtGGTCGGATGCCAAACAGTTGCCAAACCAAGTGGTGATGCACCCCGTCAAGAtattctcaatggtgcagctgtagacatttttgaggatctgagagcctatgccatgccaaatcttttcagcctcctgaggaggaagaggtgttgTCGGCCCTCTTCACagctgtgttgatgtgtgtggaccatgatagttcctaAGTGATGTGGactccgaggaacttgaagccctCAACCTGTTCCACAACAGCCCCATCTATATACATGGGGGCATGCTTGAATTACCAATGAAAGCTTGGGTTGAAAGTTTTGCGCTGAAGTCTGGTTGATTTATTTGTTTGTGTTGGTGTTGGCTTTGAATGTATATTCTATAAGTGTTTTTTGGTATCTAAATAAAGGTTTTACGTTCATTTCGTTTTA

Function

NR:

description
cadherin-13-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615579.2 True 4181 mRNA 0.47 17 37923872 37948962

Neighbor

gene id symbol gene type direction distance location
LOC110532006 LOC106571916 coding upstream 17942 37863680 ~ 37905930 (+)
LOC110532004 LOC106571913 coding upstream 194028 37721066 ~ 37729844 (+)
LOC110517304 LOC106571911 coding upstream 206765 37666342 ~ 37717107 (+)
tnnc1a LOC106571909 coding upstream 313698 37605201 ~ 37610174 (+)
LOC110531997 LOC106571907 coding upstream 406954 37510543 ~ 37516918 (+)
LOC110532009 LOC106571922 coding downstream 28462 37977424 ~ 37979829 (+)
LOC110532011 LOC106571923 coding downstream 72719 38021681 ~ 38033223 (+)
LOC110532014 LOC106571929 coding downstream 919307 38868269 ~ 38884647 (+)
LOC110532013 LOC106571930 coding downstream 937662 38886624 ~ 38909718 (+)
LOC110532019 LOC106571933 coding downstream 1115188 39064150 ~ 39072385 (+)
G800727 NA non-coding upstream 3505 37920109 ~ 37920367 (+)
G800705 NA non-coding upstream 16292 37907267 ~ 37907580 (+)
G800589 NA non-coding upstream 94639 37825979 ~ 37829233 (+)
G800583 NA non-coding upstream 109014 37814445 ~ 37814858 (+)
G800576 NA non-coding upstream 117617 37805966 ~ 37806255 (+)
G800776 NA non-coding downstream 21496 37970458 ~ 37973015 (+)
G800789 NA non-coding downstream 40402 37989364 ~ 37989649 (+)
G800826 NA non-coding downstream 101371 38050333 ~ 38055272 (+)
G800834 NA non-coding downstream 121254 38070216 ~ 38071433 (+)
G800996 NA non-coding downstream 385649 38334611 ~ 38337642 (+)
G799858 LOC106571908 other upstream 353461 37567245 ~ 37570411 (+)
G799578 LOC106571900 other upstream 887954 37034418 ~ 37035918 (+)
G799053 NA other upstream 1607067 36313129 ~ 36316805 (+)
G797932 pphln other upstream 2551724 35364988 ~ 35372148 (+)
G797056 NA other upstream 3367250 34555931 ~ 34556622 (+)
G801778 NA other downstream 839099 38788061 ~ 38788354 (+)
G801851 NA other downstream 983990 38932952 ~ 38933868 (+)
LOC110531165 LOC106571934 other downstream 1284103 39111355 ~ 39237408 (+)

Expression


Co-expression Network