LOC110531163 (LOC102784363)


Basic Information

Item Value
gene id LOC110531163
gene name LOC102784363
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 37953610 ~ 37961387 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110531163
ATGCCGAAATGTAGTCAGATCAAGACCCAGACTCGCCACTTAGTGGACCACCGCAATGTGAAGCTACTGACTGGAGCAGGTGGGAAAGGGGCCTGCACCTTCCATAGTGAGCCCTGGAAAGAGTGGGGTGGACCGGACGGAGGGAATGGAGGAGATGGTGGGAACATCATCAAAAACGAACGACAGGTGAAATCCCTGGCGCAGGTCACCCCCGTTTACAAAGGAGTTGATGGCGACTCAGGAGGCTGTAAGAACCGCTATGGACGCAACGCCAGCACAATCTACATCGCTGTGCCAGTGGGCACGGTGgtgagggagcaggggagactaTGGCAGACCTCTCCCAGCATAGCCAGGAGTACATGGCTGTGTTTGGAGTGGCTGGGGGGGAAAAAGGAACCGCGCTTCCTGTCCAATGAGAACCGTGCCCCAATGACGGCCACCCCGGGAGAGAGAGGCCAGGAGAGTTGTCCTCCAGCTGAAGCTGCGTACCATGGCCCATGGCTGGATGGTTGGATTTCCTAATGCAGAGAAGTCTTCTCTTCTATGGACCATCTCCAATGCCAGGCCTGCTGTGGCTGCCTACTCCTTTACAACCCTCAACCCCCACGTGGGAATTGTTAAGTACAGGGACCATGAGCAAGTGGCGGTGGCTGACATCCCTGGTATCATACATGGGGTCCATCTGAACCGAGGCCTGGGGATCTTCTTCCTGCGCCACGTTGGGCGCTGTCCCTTCCTGCTCTTTGTCCTGCACCTGTCCTCCCCAGAACCCTGGACCCAGCTCCAGCACCTGCGTTTCGAGCTGAACCAGTACGAGCCGGACTCTCCCACTGGCCCCACGTTATCTTGGCCAACAAAATGGACCTGCTTGGGGCTCGGGGGAAAATGGACGCCCTCAGGGGCCACATGGCCCAAAGGGTGATCCCTGTGTCAGCCCTCACAGGCCAGAACAGAGAGGAGCTGATAATCCACCTCAGGGAGGTGTAG

Function

NR:

description
PREDICTED: mitochondrial ribosome-associated GTPase 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110531163 True 990 mRNA 0.58 6 37953610 37961387

Neighbor

gene id symbol gene type direction distance location
LOC110531162 LOC106571919 coding downstream 400 37948740 ~ 37953210 (-)
LOC110532003 LOC106571912 coding downstream 183213 37729990 ~ 37770397 (-)
LOC110531161 NA coding downstream 311704 37638412 ~ 37641906 (-)
LOC110532001 LOC106571910 coding downstream 319468 37628778 ~ 37634142 (-)
LOC110531998 LOC106571908 coding downstream 371806 37567212 ~ 37581804 (-)
LOC110532012 cdh4 coding upstream 91328 38052715 ~ 38440830 (-)
LOC110532016 NA coding upstream 583817 38545204 ~ 38548047 (-)
LOC110532015 LOC106566767 coding upstream 877878 38839265 ~ 38841685 (-)
LOC110532017 LOC106571931 coding upstream 1035124 38996511 ~ 39019461 (-)
LOC110532021 LOC106571935 coding upstream 1297101 39258488 ~ 39261833 (-)
G800721 NA non-coding downstream 35696 37917535 ~ 37917914 (-)
G800656 NA non-coding downstream 124453 37825934 ~ 37829157 (-)
G800559 NA non-coding downstream 168465 37784460 ~ 37785145 (-)
G800558 NA non-coding downstream 169306 37784006 ~ 37784304 (-)
G800553 NA non-coding downstream 181481 37771920 ~ 37772129 (-)
G801084 NA non-coding upstream 18956 37980343 ~ 37980543 (-)
G801086 NA non-coding upstream 20909 37982296 ~ 37983117 (-)
G801091 NA non-coding upstream 27248 37988635 ~ 37989366 (-)
G801072 NA non-coding upstream 88933 38050320 ~ 38052661 (-)
G801139 NA non-coding upstream 108846 38070233 ~ 38071472 (-)
G800318 NA other downstream 608463 37344395 ~ 37345147 (-)
LOC110531982 LOC106571893 other downstream 1045962 36827882 ~ 36907700 (-)
G798993 NA other downstream 1802973 36150338 ~ 36150637 (-)
LOC110531979 brpf1 other downstream 1974495 35948544 ~ 35979307 (-)
LOC118966032 LOC106571870 other downstream 2432278 35492026 ~ 35521884 (-)
G802100 NA other upstream 1005069 38966456 ~ 38996032 (-)
G802138 NA other upstream 1089143 39050530 ~ 39061381 (-)
G802149 LOC106581475 other upstream 1113094 39074481 ~ 39074720 (-)
G802602 LOC106571943 other upstream 1419363 39380750 ~ 39383210 (-)

Expression


Co-expression Network