LOC110532009 (LOC106571922)


Basic Information

Item Value
gene id LOC110532009
gene name LOC106571922
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 37977424 ~ 37979829 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615591.2
ATTTGATTCTGTTATTAAGATTGATGGTTGATCAGAATTCCATCATGTCTATGAAAATATCGTATTTTTCGAGActcactcagtaatgtgttggtaTAACCCATTCAGTCAGCTATAGGCTACAGTATAATTTCTCACAGTAGTAGGGGTGTTCTTTGATTCAGGACATCCAATGCGCTCGCTCTCCAACGTAAACCAACGATGGCCGCAATAAATCAAGGCTGTTGCATACTAAAGTCCGGATGAGGCGCTGTGTTCAATTTGAATGTGCTGTTTCATTCAAGTCTGATCACTTTCGCTTTTGTTAAAGAGCGAGGGCCAGTCGAGGAGACACAGAAATCGGTTTTCTTTACAGGTAAAGTGCTTGGAAGATGAGCTACGATCGTGCAATCACAGTGTTCTCACCTGATGGCCACTTATTCCAGGTGGAATACGCACAGGAGGCGGTCAAAAAAGGTTCAACCGCTGTTGGAGTGCGAGGAAAAAACGTTGTTGTGCTAGGAGTGGAGAAGAAAACTGTCGCCAAGCTCCAAGATGACAGAACAGTGCGCAAAATCTGTGCCTTGGATGACAACGTCTTCATGGCCTTTGCAGGGTTGACGGCAGATGCCAGGATCGTTGTTAACAGGGCTAGGGTGGAGTGTCAGAGTCACAGGCTTACAGTGGAAGACCCTGTGACTGTGGAGTACATCACACGCTTCATTTCCAGCATCAAacagCGCTACACCCAAAGCAATGGGCGAAGGCCCTTTGGCATCTCCTCCCTCATTGTGGGGTTTGATTTCGATGGAACACCCCATCTGTACCAAACTGACCCTTCAGGAACATATCATGCCTGGAAGGCAAATGCCATTGGAAGATCTGCCAAGACTGTACGTGAGTTTCTAGAGAAGAACTATAAAGAGGAGCATATGGAATCCGATACAGACACCATTAAACTGGCCATCAGAGCGCTACTTGAGGTTGTCCAGTCAGGGGGAAAGAACATTGAGCTGGCCATTATGAAGCGGGATGAATCAATGAAGATTCTGGTCCAAGAGGAAATTGAGGAATATGTCACGGCTATTGAAAAGGAAAAGGAGGAAGCAGAGAAACAAAAGAAGAAAACATGAACACTCTCTGATTGAAGTCATGACCAAACATGCCTTCATCCATCTTCAATATTACATCACGATTCTCATTGTTTACATTAATTATCTCATCGTTTCTCTATCCAATGCTGGAGGGGCTCCTAAGGAGTGCATATTTTTGTTCCAGCACACTTCTTTTGACTAGTCACCGGGCTCTTGTTTGGCTGAATCAGGTAGGCTTTGGTAGTGCTGGGAGAGACTCTTCTGGTTGCCGAGACTAGTGTTGGGCTAAAACAAAACTACCATCCTGGGAGTCCCAATTAAATGGATTGAGAAACACTGCTGCCCTAATTGACCATATGACAACTTAAGACTGCCTTATTCTTGCAATGAATAAATATCTGTATTTAAACTACAA

Function

NR:

description
PREDICTED: proteasome subunit alpha type-7-like

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG:

id description
K02731 PSMA7; 20S proteasome subunit alpha 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615591.2 True 1488 mRNA 0.44 7 37977424 37979829

Neighbor

gene id symbol gene type direction distance location
LOC110532007 LOC106571918 coding upstream 28462 37923872 ~ 37948962 (+)
LOC110532006 LOC106571916 coding upstream 71494 37863680 ~ 37905930 (+)
LOC110532004 LOC106571913 coding upstream 247580 37721066 ~ 37729844 (+)
LOC110517304 LOC106571911 coding upstream 260317 37666342 ~ 37717107 (+)
tnnc1a LOC106571909 coding upstream 367250 37605201 ~ 37610174 (+)
LOC110532011 LOC106571923 coding downstream 41852 38021681 ~ 38033223 (+)
LOC110532014 LOC106571929 coding downstream 888440 38868269 ~ 38884647 (+)
LOC110532013 LOC106571930 coding downstream 906795 38886624 ~ 38909718 (+)
LOC110532019 LOC106571933 coding downstream 1084321 39064150 ~ 39072385 (+)
LOC110531165 LOC106571934 coding downstream 1131526 39111355 ~ 39237408 (+)
G800776 NA non-coding upstream 4409 37970458 ~ 37973015 (+)
G800727 NA non-coding upstream 57057 37920109 ~ 37920367 (+)
G800705 NA non-coding upstream 69844 37907267 ~ 37907580 (+)
G800589 NA non-coding upstream 148191 37825979 ~ 37829233 (+)
G800583 NA non-coding upstream 162566 37814445 ~ 37814858 (+)
G800789 NA non-coding downstream 9535 37989364 ~ 37989649 (+)
G800826 NA non-coding downstream 70504 38050333 ~ 38055272 (+)
G800834 NA non-coding downstream 90387 38070216 ~ 38071433 (+)
G800996 NA non-coding downstream 354782 38334611 ~ 38337642 (+)
G801490 NA non-coding downstream 550342 38530171 ~ 38530414 (+)
G799858 LOC106571908 other upstream 407013 37567245 ~ 37570411 (+)
G799578 LOC106571900 other upstream 941506 37034418 ~ 37035918 (+)
G799053 NA other upstream 1660619 36313129 ~ 36316805 (+)
G797932 pphln other upstream 2605276 35364988 ~ 35372148 (+)
G797056 NA other upstream 3420802 34555931 ~ 34556622 (+)
G801778 NA other downstream 808232 38788061 ~ 38788354 (+)
G801851 NA other downstream 953123 38932952 ~ 38933868 (+)

Expression


Co-expression Network