XLOC_026695


Basic Information

Item Value
gene id XLOC_026695
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 43187194 ~ 43189085 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052485
atgaagatgatgaacaACAATGAGATCAGGAGACACACACAACCAGGAGGGAACCACACTGGAAAGAGAGACGAAGACACTATAGGTACACTGGAGCAGACAAGAAAATCTACAATGTGCATGCTGCACATTGAAATTTTTTTTGGCAGTCTGGCTCTCCAGCACACCGCACATGGTACCACCGGGCACAACTATCACACTGGATCTGTATCAACAAAAAGAATAATCCACAAACAATTTCAGGGTGAATATGCATGCATATATCCTTCTAACTATATCTCTAAAAATAACAAGGTCATATATACAGTTGTCACTTGGCCACTttggactttttaaaattttttaaaattttgaaaattttattttctttcattttttttcttacccAAAGAGTTGTTTCTCCTTCCTCATCTATACTCCTCTCACCACAATAATGGCACAAGTCCGTAAGGTCATCTggtatatataaaacataaaaatacacatagaaacataaataaatgtttaatgataTTAACAATGCATGCTATTCAAGGTTTTTTCCAAAGCTGACTATTAAACAGTTTGAATGCACAATGTGGTTACCTCAGAGAAGGCATTCAAATTGTGTAATGCACAGCTAACATTAGATTTATCTGCTTATATCATGGTCATTCGCCTGCACTATCTACTGTTGAGATCTGAGTTATTAGCcctctgtttttcttttctccaatttctgtttaatggagagcagattttgtcagcacatttctaaacagaatagtgttaataactcatctctaataactgatttattttatctttaactagacaggttagggtaattaggcaagttattgtacaatgatggtttattctgtagaaaaaaaaatctagcctaaaggggctaataataatgaccttaaaatggtttttaaaaaaattaaaagcttttaatctggctgaaataaaacaaatgagacgtactccagaagaaaaaaatattatcagacataataatatctgtgaaaatgtatttgctctgttcaacattatttgtaaaatatttaaaagagaaaaaagaattcaaagggtggctaataattctgacttcaactgtatgtacagtaaaaGCTGATGTTTGTGGAGTATACATACATTAATCTTTATACCAGGTGTGAACAGGGCTTTTAGTATTAGTAGCTCAAAAATCTAGCTTAAGGGGACTTAtgatactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatgtgtgtgtgtgtgtgtgtgtataaaatgtgtattATGATCTGACACCTACAGTATGgacatttcatttatatttattttctaaaataagcCCTTTTCTCAACCTCCCATGCT

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0021536 diencephalon development biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0071599 otic vesicle development biological_process
GO:0006396 RNA processing biological_process
GO:0042471 ear morphogenesis biological_process
GO:0042472 inner ear morphogenesis biological_process
GO:0006413 translational initiation biological_process
GO:0072175 epithelial tube formation biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0071679 commissural neuron axon guidance biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0003002 regionalization biological_process
GO:0035148 tube formation biological_process
GO:0007399 nervous system development biological_process
GO:0021983 pituitary gland development biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0021510 spinal cord development biological_process
GO:0021511 spinal cord patterning biological_process
GO:0060322 head development biological_process
GO:0090501 RNA phosphodiester bond hydrolysis biological_process
GO:0051960 regulation of nervous system development biological_process
GO:0030684 preribosome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052485 True 1401 lncRNA 0.34 2 43187194 43189085

Neighbor

gene id symbol gene type direction distance location
XLOC_026694 NA coding downstream 160459 43024821 ~ 43026735 (-)
XLOC_026693 mafk coding downstream 205455 42964045 ~ 42981739 (-)
XLOC_026692 BX908797.1 coding downstream 218650 42918143 ~ 42968544 (-)
XLOC_026691 CABZ01079183.1 coding downstream 320994 42866083 ~ 42866200 (-)
XLOC_026690 NA coding downstream 440410 42548944 ~ 42746784 (-)
XLOC_026696 snn coding upstream 158432 43347517 ~ 43821381 (-)
XLOC_026697 uncx coding upstream 163471 43352556 ~ 43356082 (-)
XLOC_026698 axin1 coding upstream 389890 43578975 ~ 43686469 (-)
XLOC_026699 zgc:92162 coding upstream 568096 43757181 ~ 43770876 (-)
XLOC_026700 rmi2 coding upstream 639460 43828545 ~ 43835055 (-)
XLOC_026689 NA non-coding downstream 813595 42371784 ~ 42373599 (-)
XLOC_026688 BX005183.3 non-coding downstream 971181 42212710 ~ 42216013 (-)
XLOC_026702 BX682557.2 non-coding upstream 677700 43866785 ~ 43875129 (-)
XLOC_026703 BX682557.1 non-coding upstream 689371 43878456 ~ 43889443 (-)
XLOC_026708 NA non-coding upstream 922460 44111545 ~ 44124370 (-)
XLOC_026709 NA non-coding upstream 1143662 44332747 ~ 44335853 (-)
XLOC_026716 NA non-coding upstream 2350701 45539786 ~ 45543451 (-)

Expression


Co-expression Network