LOC110532019 (LOC106571933)


Basic Information

Item Value
gene id LOC110532019
gene name LOC106571933
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 39064150 ~ 39072385 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615603.2
TTTGacggtttcctcattaccatacAAAATAGACGTCAGCATTTGTGCAGCTGGCAAAAAAAATACTGGTGGACGTTTAACTGACTTACGAACAAATCGCGTGTGTGTTTGGTACATCTTTTTTTGTTGTCGTTTCTTAGCTAACACATGACCTGCAATTTACCCAGTGTACTGGCAGTGGTGGAGGGAGCAAAAGAGGAGAGTTTGCATCTGTGTGCAAGCGGGGGGCAGCGAGTGACTGAAGTGCGGCAGGGAGGGAGAGCTGTATCGGTCAGCCATGGGTTTCCGAAAGAAGAACAAGAGCCCGGCGGTGCTGAGCCACGAGTTCGTGATCCAGAATCACGCCGATATGGTTTCGTGTGTGGCTATGGTCATTCTCCTCGGCCTGATGTTCGAGGTGACAGCGAAGTTTGCCGTCATGTTCATCACTGTCCAGTACAATGTGACGCAAGGTCTTGATGAGCGGGCTGAGCCAGTGAACCTGTACCAGTACGGCCCTAAAGacatggccactgtgttcttctaCCTGCTCATTGCTGTCATACTCCACGCCTTAATACAGGAATACGTTCTTGACAAAATGAATAGGCGGTTGCATCTGTCAAAAACCAAACACAGCAAGTTCAATGAGTCGGGACAGCTTGCTGCCTTCTACTTAATCTCCTTCATCTGGGGCTGCAGCATCTTAACAGCGGAGGAATTTGCAACAAATCCTACTTTCCTATGGGCGGGCTATCCACACACCCACATGGTCTTTCAGGTGAAGTTCTTCTACATTTGCCAAATGGCCTACTGGCTCCACGCCCTTCCTGAGCTGTACTTCCAGAAAGTGCGAAAGGAGGACATTCCCCGCCAGCTCTATTACATTTGCCTTTACGTCTTCCACATCACCGGTGCCTACGTCTTAAACCTCCACCGGCTGGGCCTGGTGCTGCTTGTACCTCACTCCCTGGTGGAGCTCCTGTTCCACGCCTCGCGCCTGTTCTATTTCAGTGACGAGAACAAGCAGAAGGGTTTCACTTTGTGGGCGATGCTTTTCGTCATCGCACGCCTCGTCACCCTCACCCTCTCCGTACTGACATTCGGCTTCGGACTGCCCCGTGCAGAGAACCAGGGATTCTCATTGGCGGAGGGAAACTTTAATGTGCTCACCGTTAGGATGACATGCCTGGCTGCCATTTGCCTCACCCAGGCCTGGATGATGTGGAAATTCATCAACTTTCAGCTGAAGAAGTGGAGGGAGCACAGCCAGAGCCAGGCTTCCAAGGTGAAGGCTATCAGCCCAAAGAGCAAGCCCCACAAGAAGGACCCAGCCCGGGGTTCTGCCAACGGTGTTGGTCTGAAGTCTGATGACAAGACATCACCTCGGGCAAGAAAAGCCTTGTAGAGATGGAGGGCGAGAACTAAGTGAGGGGGCTGCTCTCAATGTGACACTTTTCACCACATAAAAAAAGTTAACTTACTGTTCGCCAAAACAACCACTTAAATGCACAAAGAAACCGTAACTTAACCATCTCTTGAGTTAGAACTGTTAAAAACTAGGTTCTGTTTTGATGACCTGATATGTTTGTGTTCAGTCGTTCTTTCTCAGGATGTAATTAATGTAGGCCGGGCATGGTCGACTGGTTCAACGCTTTAACTGGATAAATTGGTCAAAAAAGTGTCCCTTTTTGGAGAGGACTTCCTATTGCATCCAGCTTCAGGGCCTGATTCTATCAAACTTGTTAACCGGGTTTATGAGGAAGTCAAACAAGTACTGTTCAATTTGCATTAAAAGAGTGCATGTCAGGATTCATGTTCTCAACCGAACATGTGGAAGAAAGAATGGGGAAGCATTGGGCATGAAGTTTAGCCGTTTACCTGGCCGTTGGTTTCGATTGAATAGGGACCTCACCATTAACTCCTAAAAGGTGTCTGTTTACTGCCTGTATTGTTACCTGCCTTTTGCCATATGAAACCTGGGCTATTATGGGATTGAGGGCACTGTTTGTCATTAGTAGCCCCCATCTTCTGACTCAACTGGCCTTCATCCAGGAACCGGAACTCCTGACGGGAGATACTGTCTTTATCCATGCAGACCTAGATCTCTTGAGCAGATGATGCATTCGTGTAAGAGTAGGATTTGTGCAGGTGAGGTTTGTGTGTTTCATTCAGTTCAGGATTTCGATCCATGATATCTTCATTTAACAACGGCGGTCCTTTCTGCGCTCAAGTTGTTGTTAAGCTTCGAGGGTCATGGTTAGGTTTTGACGTGCTGTCATGTTTGAGTTTGCATATCTCAGAAGCATTCGGTGGCCTTTTTTTCACATCCGCTGGTAGAGTTTTGAGTTATTTATTTCAGTCGtatcttgtttaaaaaaatatttaaaaaataataatgcttTGGTAACTCTCTTAACCAGCATAGACGAGGTACAAAGTGAAACGCTTTGTCTCGGCGCTCAACCCAAATAATACAAAACTCCTTTAAGTGTCCTTAAAATGTCAGTGACGCGAGCTGTGAAATTTTCCTTGGGTTTCCTTTTCTGTTTGCCTTTTTTTTTATATCGGGGTATATGATGGCGGGCAGCTGCCTCCGGACACACCCACCTATTCTACTGTACGTCCCGTTCTCAGATGGGAGAGGAGTCTGTTGGTGCGTGTTTGAGCCTTTGTGCATTGTTACCTGTGGTAATGCTTCTGTTGCGTCCGTGAGGAAGTGAATGCGCCGCATGAGTCATGCTTTCGTCTTTGCTTTTTTTTCTtggtgaggggggaaaaaaaagttGTTGCCCTTGTGGTGTTATAGAATGCGACACAACCAGTTTATAGACTCCCCTCGTTTCCTTTTTGAATCCTCTACCTTGTTTTCATTTCACCCTTTTTTGTTCATTGGCGAAAGGCCTTTGTAACGAAGACGATGAGTGACAACTGAGTATATTCTATATAAAGTTAGTTGTTGGATGCTTATAACCTCTGGCCCTTCCTTAACCCTGTCCTGTATGAAAGAGATTCTGTGAGTTCTGTTTGCCAACTTTGgggtgacgggggggggggggggattcttgCTCCACCTTTCCAGTGATTTGGACGTTTGCCTTTGAACACTTATGTCCTACTGCAGACCCAATGCTGTTGCCACAAATGGGCCAGGTTACCACTCCTGCTATGGTGAACCTGATCTCAACTCTGCTTCACCAACTTCTCTGACTAGCGTTATAGTTGGCTGAATCATGTActggtctgggaccaggctacttgtTTGGTAGGTTGCGTATTTATTTTTTTTGGCAGGAAGTACATGAGGAGTCGTGACTAGTTTAGTCCTCATAGAGTGTTATCTTAAGTTGAGTGTGGAGGACTTGTGTTCTGTTATGTGGCAATGTCTCTGAGGAGGAAAGGTGGAGCAGAGGACCTTTTTTACACCagtctgtactttactgtatcgGATGTTTAAAATCTACATGAATCTAACGCTACACTGTGCTAAAAATGGTCCGAATTTTTAAAGCTATTTTTATATATTTGAAGAACTTAGTTCACCAATATTCGGCACACAGATATAAATATCTGAATATTATTTTGCATCCACATTGGCATGTTTTTCTACATCAAAAGACAAAGCTTTCTCCCCTTTCTAAGTCAGGGTTCACATGTCAGTTTCACCATCGTAGTCTATTTCATAGACTCGGCTGTATATATTGAGTAGAGTAAATGAGAACCACTCTGCCATAAGATGATGCTCAGAAAGCACTATGTGGAAACTGTCTACTGTAGttgtattgtattctactgtAATTGCTATCTGCTGTCCATGGCACTAGGTAGCAAAGCTACTGTTTTATCAGCAAGGATcctgatgtgtttttttttattgttctAAGGTGTATTTAAATCAGTGGGTCGTCCTCCTctactagcctgatcccagaccTGTGTCTTCTTTAGCCAACTCCTCTGCTAGCATGACAACCATAGTCAGAGACGTTGACTAGGATATTAGTATCTGATCAAGGACCAGGCTattgctgaccctgtaaaacaacacatttcacttcaCCTAGCTGGTGTGTGGCACTAACACATCGAACTATATACAACACTTTGGTGAAGTGTTAATTACAATAAAGGAAAGATGATCATTTTGCCCTTCATCGATTCCTTTATGAATTGATTTGATGTCATGATACACTGAGGGGCCCGAGTAACAGGAGTTTCTCTAGCCAGGTTAGGACACACGCTAACCCTGTAGCATTGAGAAGAGTTGTCTTCTCAATGCTACAACCGCTATTGAAATATACAGTGTCGTGAAGCATGACACCAATGGATGCCCCTGTGTACTGTCAGCATGTTGGGTTGTAAGCACTGTTCTGTAGCCTAGCGCGAGTCTTGACTGCAAGGACCGTTTGATCTCTGGTAAGGTGGCAATGGGCCAACACAATGCAAAGACCCATGCTAATCATTTATTAGTGTATATCAGCCGTTTAGGGGGCAACGACCATTTGATGCATTTGCAATGGGATGCATACTCCTTCATAGCAGCCAGGTACACAGAAGAGAAACATGGTTATGGTTCATGCACTGTCCTTGTTTTGTGTTTTTGCTGCTTGCTTCTAGattttttaaaaaattatttcAAAAAAAAACGTGTCGTCTCTGAAATGCTCTGGAATGTAAATTTATGCAAAAATCTTGGTATTTCTCAAATTTCTTTTGTTTGTACGTATTTCATGTTTGAATAAAGCCTTTGATTATCCAGAGTGA
>TU912578
ccccccccccctctgattCTCCTTTCCCAGTTTCACTTTGTGGGCGATGCTTTTCGTCATCGCACGCCTCGTCACCCTCACCCTCTCCGTACTGACATTCGGCTTCGGACTGCCCCGTGCAGAGAACCAGGGATTCTCATTGGCGGAGGGAAACTTTAATGTGCTCACCGTTAGGATGACATGCCTGGCTGCCATTTGCCTCACCCAGGCCTGGATGATGTGGAAATTCATCAACTTTCAGCTGAAGAAGTGGAGGGAGCACAGCCAGAGCCAGGCTTCCAAGGTGAAGGCTATCAGCCCAAAGAGCAAGCCCCACAAGAAGGACCCAGCCCGGGGTTCTGCCAACGGTGTTGGTCTGAAGTCTGATGACAAGACATCACCTCGGGCAAGAAAAGCCTTGTAGAGATGGAGGGCGAGAACTAAGTGAGGGGGCTGCTCTCAATGTGACACTTTTCACCACATAAAAAAAGTTAACTTACTGTTCGCCAAAACAACCACTTAAATGCACAAAGAAACCGTAACTTAACCATCTCTTGAGTTAGAACTGTTAAAAACTAGGTTCTGTTTTGATGACCTGATATGTTTGTGTTCAGTCGTTCTTTCTCAGGATGTAATTAATGTAGGCCGGGCATGGTCGACTGGTTCAACGCTTTAACTGGATAAATTGGTCAAAAAAGTGTCCCTTTTTGGAGAGGACTTCCTATTGCATCCAGCTTCAGGGCCTGATTCTATCAAACTTGTTAACCGGGTTTATGAGGAAGTCAAACAAGTACTGTTCAATTTGCATTAAAAGAGTGCATGTCAGGATTCATGTTCTCAACCGAACATGTGGAAGAAAGAATGGGGAAGCATTGGGCATGAAGTTTAGCCGTTTACCTGGCCGTTGGTTTCGATTGAATAGGGACCTCACCATTAACTCCTAAAAGGTGTCTGTTTACTGCCTGTATTGTTACCTGCCTTTTGCCATATGAAACCTGGGCTATTATGGGATTGAGGGCACTGTTTGTCATTAGTAGCCCCCATCTTCTGACTCAACTGGCCTTCATCCAGGAACCGGAACTCCTGACGGGAGATACTGTCTTTATCCATGCAGACCTAGATCTCTTGAGCAGATGATGCATTCGTGTAAGAGTAGGATTTGTGCAGGTGAGGTTTGTGTGTTTCATTCAGTTCAGGATTTCGATCCATGATATCTTCATTTAACAACGGCGGTCCTTTCTGCGCTCAAGTTGTTGTTAAGCTTCGAGGGTCATGGTTAGGTTTTGACGTGCTGTCATGTTTGAGTTTGCATATCTCAGAAGCATTCGGTGGCCTTTTTTTCACATCCGCTGGTAGAGTTTTGAGTTATTTATTTCAGTCGtatcttgtttaaaaaaatatttaaaaaataataatgcttTGGTAACTCTCTTAACCAGCATAGACGAGGTACAAAGTGAAACGCTTTGTCTCGGCGCTCAACCCAAATAATACAAAACTCCTTTAAGTGTCCTTAAAATGTCAGTGACGCGAGCTGTGAAATTTTCCTTGGGTTTCCTTTTCTGTTTGCCTTTTTTTTTATATCGGGGTATATGATGGCGGGCAGCTGCCTCCGGACACACCCACCTATTCTACTGTACGTCCCGTTCTCAGATGGGAGAGGAGTCTGTTGGTGCGTGTTTGAGCCTTTGTGCATTGTTACCTGTGGTAATGCTTCTGTTGCGTCCGTGAGGAAGTGAATGCGCCGCATGAGTCATGCTTTCGTCTTTGCTTTTTTTTCTtggtgaggggggaaaaaaaagttGTTGCCCTTGTGGTGTTATAGAATGCGACACAACCAGTTTATAGACTCCCCTCGTTTCCTTTTTGAATCCTCTACCTTGTTTTCATTTCACCCTTTTTTGTTCATTGGCGAAAGGCCTTTGTAACGAAGACGATGAGTGACAACTGAGTATATTCTATATAAAGTTAGTTGTTGGATGCTTATAACCTCTGGCCCTTCCTTAACCCTGTCCTGTATGAAAGAGATTCTGTGAGTTCTGTTTGCCAACTTTGgggtgacgggggggggggggggattcttgCTCCACCTTTCCAGTGATTTGGACGTTTGCCTTTGAACACTTATGTCCTACTGCAGACCCAATGCTGTTGCCACAAATGGGCCAGGTTACCACTCCTGCTATGGTGAACCTGATCTCAACTCTGCTTCACCAACTTCTCTGACTAGCGTTATAGTTGGCTGAATCATGTActggtctgggaccaggctacttgtTTGGTAGGTTGCGTATTTATTTTTTTTGGCAGGAAGTACATGAGGAGTCGTGACTAGTTTAGTCCTCATAGAGTGTTATCTTAAGTTGAGTGTGGAGGACTTGTGTTCTGTTATGTGGCAATGTCTCTGAGGAGGAAAGGTGGAGCAGAGGACCTTTTTTACACCagtctgtactttactgtatcgGATGTTTAAAATCTACATGAATCTAACGCTACACTGTGCTAAAAATGGTCCGAATTTTTAAAGCTATTTTTATATATTTGAAGAACTTAGTTCACCAATATTCGGCACACAGATATAAATATCTGAATATTATTTTGCATCCACATTGGCATGTTTTTCTACATCAAAAGACAAAGCTTTCTCCCCTTTCTAAGTCAGGGTTCACATGTCAGTTTCACCATCGTAGTCTATTTCATAGACTCGGCTGTATATATTGAGTAGAGTAAATGAGAACCACTCTGCCATAAGATGATGCTCAGAAAGCACTATGTGGAAACTGTCTACTGTAGttgtattgtattctactgtAATTGCTATCTGCTGTCCATGGCACTAGGTAGCAAAGCTACTGTTTTATCAGCAAGGATcctgatgtgtttttttttattgttctAAGGTGTATTTAAATCAGTGGGTCGTCCTCCTctactagcctgatcccagaccTGTGTCTTCTTTAGCCAACTCCTCTGCTAGCATGACAACCATAGTCAGAGACGTTGACTAGGATATTAGTATCTGATCAAGGACCAGGCTattgctgaccctgtaaaacaacacatttcacttcaCCTAGCTGGTGTGTGGCACTAACACATCGAACTATATACAACACTTTGGTGAAGTGTTAATTACAATAAAGGAAAGATGATCATTTTGCCCTTCATCGATTCCTTTATGAATTGATTTGATGTCATGATACACTGAGGGGCCCGAGTAACAGGAGTTTCTCTAGCCAGGTTAGGACACACGCTAACCCTGTAGCATTGAGAAGAGTTGTCTTCTCAATGCTACAACCGCTATTGAAATATACAGTGTCGTGAAGCATGACACCAATGGATGCCCCTGTGTACTGTCAGCATGTTGGGTTGTAAGCACTGTTCTGTAGCCTAGCGCGAGTCTTGACTGCAAGGACCGTTTGATCTCTGGTAAGGTGGCAATGGGCCAACACAATGCAAAGACCCATGCTAATCATTTATTAGTGTATATCAGCCGTTTAGGGGGCAACGACCATTTGATGCATTTGCAATGGGATGCATACTCCTTCATAGCAGCCAGGTACACAGAAGAGAAACATGGTTATGGTTCATGCACTGTCCTTGTTTTGTGTTTTTGC

Function

NR:

description
translocating chain-associated membrane protein 1-like 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615603.2 False 4743 mRNA 0.45 11 39064150 39072385
TU912578 True 3599 TUCP 0.44 3 39068372 39072225

Neighbor

gene id symbol gene type direction distance location
LOC110532013 LOC106571930 coding upstream 154432 38886624 ~ 38909718 (+)
LOC110532014 LOC106571929 coding upstream 179503 38868269 ~ 38884647 (+)
LOC110532011 LOC106571923 coding upstream 1030927 38021681 ~ 38033223 (+)
LOC110532009 LOC106571922 coding upstream 1084321 37977424 ~ 37979829 (+)
LOC110532007 LOC106571918 coding upstream 1115188 37923872 ~ 37948962 (+)
LOC110531165 LOC106571934 coding downstream 38970 39111355 ~ 39237408 (+)
LOC110532020 LOC106571937 coding downstream 167794 39240179 ~ 39256626 (+)
LOC110532026 LOC106571943 coding downstream 302983 39375368 ~ 39383225 (+)
ddx23 LOC106571944 coding downstream 328650 39401035 ~ 39411199 (+)
adcy6a LOC106566714 coding downstream 393546 39465931 ~ 39513879 (+)
G801920 NA non-coding upstream 19002 39044898 ~ 39045148 (+)
G801915 NA non-coding upstream 26907 39036987 ~ 39037243 (+)
G801913 NA non-coding upstream 28435 39035409 ~ 39035715 (+)
G801907 NA non-coding upstream 37764 39025915 ~ 39026386 (+)
G801905 NA non-coding upstream 39896 39023900 ~ 39024254 (+)
G801924 NA non-coding downstream 1290 39073675 ~ 39074102 (+)
G801927 LOC106581475 non-coding downstream 2086 39074471 ~ 39074715 (+)
G802158 NA non-coding downstream 15226 39087611 ~ 39087840 (+)
G802169 NA non-coding downstream 25109 39097494 ~ 39097781 (+)
G802222 NA non-coding downstream 135152 39207537 ~ 39207784 (+)
G801851 NA other upstream 130282 38932952 ~ 38933868 (+)
G801778 NA other upstream 275796 38788061 ~ 38788354 (+)
G800834 NA other upstream 992717 38070216 ~ 38071433 (+)
G799858 LOC106571908 other upstream 1493739 37567245 ~ 37570411 (+)
G799578 LOC106571900 other upstream 2028232 37034418 ~ 37035918 (+)
G802324 LOC106571945 other downstream 343490 39415875 ~ 39417460 (+)
spryd4 LOC106571951 other downstream 566869 39639241 ~ 39640889 (+)
G802821 NA other downstream 717272 39789657 ~ 39790402 (+)

Expression


Co-expression Network