LOC110532020 (LOC106571937)


Basic Information

Item Value
gene id LOC110532020
gene name LOC106571937
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 39240179 ~ 39256626 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987944.1
TCGAAGGAGTATTCAAGACACCTGTCAAGAAGGACCTGGAGTGTAGCCCGTACGTTGGTTGCCCTGCTTCGATATAACTCAAAGCATGGAATAAATAAGTATTTTTTGCATCGATACAGCTCGGACGAATCAAGCCTGATTGCGCGCTTGAAAACCAAACCATTGCGCATTTAAATCTTCCATCTCTCCAGCACCAGTTGTGTTGTTTGGAACTTTGATATACCGCCTGTGACTGTTtatattgtgtgtttttttcccccatagACGGTTTACTTTTTCCATTCGGACGCAGCCGGACAAATGCTTTTCCATCAATTTGTTAACGGAGGTCTGGAGACAATGCATCCCACTATTCAGAATGACACTACTTTCACTAAGATTTTTGTCGGTGGTTTACCTTATCATACCAACAATGCATCCCTTCGAAAATACTTCGAGACGTTCGGGGATATTGACGAGGCCGTTGTGATAACGGACAGACAAACCGGGAAATCCCGAGGATACGGCTTTGTGACTAtgatggacagaggggcagcagaGCGGGCATGTAAAGACCCCAACCCCATCATCGACGGTAGGAAGGCTAACATCAACCTGGCCTACCTGGGAGCCAAGCCACGCAGCCCACAGAcagGTTTCTCCATCGGTGTGCAGCAGGTCCATCCCGCCCTGATCCAGAGGCAGTATGGATTGGCCCAGCAGTATGTGTACCCCCAGGCCTTCCTCCAGCCCAGCCTGTTGCTCCAGTCCCACCTCAGCCCCTCTCaggcctccctctcctccccgtaTCTGGACTATAGCTCAGCCTATGCCCCCTACACCTCCACCCCCTCCACTGGCCTGGAGCACTACCCCTACGCCCCCTCGCCCTCCGCTAGCTACCTCCGCTACAGCTACTCCCCCGCCACACCAGGCCCTACCATGtctgccccccccacccctcccacaCCCATCCACCTCTCCCTCAACCCCCTCACTGGCCTCTCTGCCCCCCCTGCAGCCTACCTCCAATATCCCCTCCACCACCCCGACCGTATGCAGTGAGGGGGGCCTGGGCTATGGAGGTGAGTGAGGGTAATCGGAGGGGGACACATGACAACAATGTATGCAGACTTGGAACAAAGAGGATTATTGCACTATGACCTGTGACATCATCAGGACGAGACTCCCGGAAACCAAGGAGAGAGTGGGGTCAGAATCCAAAGGGCTTTGtgaaaacaaagaaaaacaaaacacacTGAGATTTCTTCCTGTTTTTCTATTAGGGTTATTATCCATTATTGTTATCGTAGTTGTTACTATACTACTATTGCTGTTGTCGCCAATGTTTATATGAATGTTTGACGAGCTCTCCTGGTGTCCGATGCCAAACGTGATGGAGTCAATGGACCATGAGAACACAAGAAGAGGAGAATTAATCATTCGAGAACCTACCACCTTCCACTCCTTACCCGCAGAGACCACCCACCCTCGTACACAAATAGCTACGACTTTTCTGAGCAGCCCTTTAAATGCAGTGGATGGGGTTTGAAGGTTGGGCGAAGATGGGTTGGATAGCCATTATAGGTCACCAGATTCTCCGCCTCACTCTTCCAGAAGTTACTGCTGAACATTTAATTAGCGAGGTGAGACAGACGCAGCATGatagaattagaatactagaatggacatgaaccttcttatgatggtccaaaggtcagccatgttggtcagggtgatggtcaaccatggtttgccagtgctgtgataaggTATTGTGTAAAGCAATGAATGTGAAGAATTTATCAGtactgtgttagctagctagccagccaggttTAGAGAAATTATTCTATAAATTTGTCAAATTAACTGCCAATAtaccaacattccattcaaaaAATTGTGAATTCACAGCCATACACTGGCGCCAATCAGTTAATGGGACTTAGACAcattgtaaatgcaacaagtactgatattgtatcacataatagcactcacagctttctgtttacatatatttcagaggctattttatcgccccctcTAGTAATTTAGTAGGatttacagtaccttcagaaagtactcataccCCTGCTACAGcctgttacaacctgaatttaaaaattattaaatattttttctttctcacccatctacacacaactcctcataatgacaaagtgaaaacatgtttttagaaagttTAGCaaatttttttttaagaaaagaaaatatctaatttacataagtattcacatccctgagtcaatactttgtagaaacacctttggcagcgattacagctgtgagtctttctgggtaggtctctaagagctttgtacacTTGGATTGGACAATATTTGaccattttattattttcaaaagtcttcaagctctgtcaaattggttgttgatcattgctagacatccattttcaggtcttgccatatattttcaagtagattgAAGTCCAAACTGtgactcagccactcaggaacattcactgtctttttgaTTTGCAACTCCAGTTTAGATGTGGCCTTGTGtcttaagttattgtcctgctgaaaggtgaattaatctcccaatgtctggtggaaagcagactgaaccaggattttgcctatgcttagctccattttttttatcctgaaaaactccccagtccttaatgattacaagcatacccataacatgatgcagccaccactatgcttgaaaagaTGTAGAGTGGTACTTAGCAATGTGTTGTAtttgatttgccccaaacgtaacactttgtattcaggacataaaatgaattgctttgacacatgttttgcagtattactttagtcctTGTtggcaaacaggatgcatgttttggaacattttttattttgtacaggcttccttcttttgactctgtcaattaggttaatattgtggagtaactgtaatgttgttgatccatcctcagttttctccgatCACAAACTATAATCACAAACTCACccttggcctcatggtgaaatccctgagcggtttccttcttctccggcaactgaattatctttgtaatgactggatgtattgatacatcTTCCAAAGTGTGATTAATAACTTAACCATGCTAAAAGTGATATTCAAAAAATACCTCCctggtgtttgtggttgaatctgtgtttgaacttCACTACTCAACTGAGAAAATGTTAAAAAACATAAGTTTGACATTATCCCCATatggtgtgtaggccagtgacaaattctcaatttaatccttttttaaattcaggctgtaacgcaacaaaatgtgggaaaaagtccAAGGgaagactttctgaaggcactgtatatgggcaGCATCCTCTTCTGGACTTCCTTCAGGAATACCTTTCTGAATGTGGCCTTAACACCTCTGTACATTCTATTCTCTACTTCAGAATGTTGTTCTATGTCCATTTTTACAAGATTCATACCTCCAGTGGAAAATGTTTATGCACTCTCTGTTGTCTCTGCTTGTCCGTCTATCTGCTCTATTCCCATTTTCCATGTCCTCCATATTTGTGAGTAAATTATTGCAGATTGAGATAATCACAATTTCACTGAATATGCCATTTATTATTATTCTAATGGAGTATGGGATGAATATGTATAAGGTAGACAACACTGTAACATATGCTTTTTATATAATTGTTACCTAAGATATTCACGTCAAAGCAGATTTTAGTAAAGTATCTATTTCCATATTCATCATCATTCGAGACCTGCAGCAGCTGGGGTAACTGACTATCTCAGTATTTTTTAACATGAGCAGATGCAGAAAACAATACAGGCTGTGCTATTTGGTATTGGAATAGTAACGCGATGTTATAACGATACAATAGTTGTCTATCAGGGAAGGTGAAATGATCTCTGCTAGAACCTTCGTGTCCATACTTGACTGATTGATgctatatgggggggggggggggtgattcagtagttgtctgtgtgtgtgaggcagtGAGTACGCGTGAGTGTGCCAGTGTATGAATGTGTTTTTGTTAGCTTCAGTGTCAGTCCCCATTGTGAGAGTCAGCGTTGTGCCATTGTCTCTGGGCCGGCTGCAGTTTAGGGTACAGAGCTGCTCCAGGAGTCTCTGTCTATATAACCACCTTATTCACATGTATGATGAAGCCATACAACCACGAGAAAATATGCATAATAAAAATAATTTGTAATTAAACAAAA

Function

NR:

description
RNA-binding protein 38-like

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K25006 RBM24_38; RNA-binding protein 24/38

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987944.1 True 4200 mRNA 0.43 4 39240179 39256626

Neighbor

gene id symbol gene type direction distance location
LOC110531165 LOC106571934 coding upstream 2771 39111355 ~ 39237408 (+)
LOC110532019 LOC106571933 coding upstream 167794 39064150 ~ 39072385 (+)
LOC110532013 LOC106571930 coding upstream 330461 38886624 ~ 38909718 (+)
LOC110532014 LOC106571929 coding upstream 355532 38868269 ~ 38884647 (+)
LOC110532011 LOC106571923 coding upstream 1206956 38021681 ~ 38033223 (+)
LOC110532026 LOC106571943 coding downstream 118742 39375368 ~ 39383225 (+)
ddx23 LOC106571944 coding downstream 144409 39401035 ~ 39411199 (+)
adcy6a LOC106566714 coding downstream 209305 39465931 ~ 39513879 (+)
LOC110532032 NA coding downstream 244627 39501253 ~ 39503641 (+)
g6pd LOC106571947 coding downstream 274833 39531459 ~ 39542666 (+)
G802231 NA non-coding upstream 23816 39215311 ~ 39216363 (+)
G802222 NA non-coding upstream 32395 39207537 ~ 39207784 (+)
G802169 NA non-coding upstream 142398 39097494 ~ 39097781 (+)
G802158 NA non-coding upstream 152339 39087611 ~ 39087840 (+)
G802241 NA non-coding downstream 1782 39258408 ~ 39259969 (+)
G802292 NA non-coding downstream 65990 39322616 ~ 39322837 (+)
G802191 NA non-coding downstream 69404 39326030 ~ 39384896 (+)
G802195 LOC107737655 non-coding downstream 81280 39337906 ~ 39339194 (+)
G802313 NA non-coding downstream 133672 39390298 ~ 39390539 (+)
G801851 NA other upstream 306311 38932952 ~ 38933868 (+)
G801778 NA other upstream 451825 38788061 ~ 38788354 (+)
G800834 NA other upstream 1168746 38070216 ~ 38071433 (+)
G802324 LOC106571945 other downstream 159249 39415875 ~ 39417460 (+)
spryd4 LOC106571951 other downstream 382628 39639241 ~ 39640889 (+)
G802821 NA other downstream 533031 39789657 ~ 39790402 (+)
G802822 NA other downstream 535291 39791917 ~ 39792333 (+)

Expression


Co-expression Network