XLOC_026696 (snn)


Basic Information

Item Value
gene id XLOC_026696
gene name snn
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 43347517 ~ 43821381 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051985
GTTCTCTGATAAAAACCGGCCTAGCTTCGATGTAGAGCGAACGAAAGCCTCAGGAACTCTGCAGACCCTTCTCTTGTGGCTAGTTGCTGATCGAGTTCCCTGCGACTTTGAGCATGTCTATAACGGACCACAGCCCCACCACTGGGGTCGTCACCATTATTGTAATACTCATCGCCATCGCAGCATTGGGTGCTTTAATTCTGGGCTGTTGGTGCTACTTGCGGCTGCAGCGCATCAGTCAGTCTGAAGACGAGGAGAGCATCGTGGGCGAAGGTGAAACCAAGGAGCCCTTCCTACTAGTCCAGTATTCAGCACGGGGCCCGCGGGTCGAGCACAAGACCAAACTCACTCCTAACGGCACCGAGAGCCACACTTAGCTCCCTCAACAGTGCGTACTATGTAGACTCAGTCTCAATCAGCACTGAAATGAAAGCACTCCACGCTGATGAACCAAGACCAACCTAGTGCATGCAGTTGTCTAGTTGCTTTGACTGTTGATTTGTTCCCGACCCATTTTGTGGTGGTAGAGCCCTGTTATAATGTGAAATCGACGACAAGTGTACGAGTTTTGTGCAATGATGTTTATTTGTAAAGACGTAGCCGGTTTATGAAGATAAATTAAGACTAAAAAGCCGTTCACATCAAGGATGATAACTATAAACTTAATGATATAGCTACAAAAAAGTCCTATTATGCTGTGGATTTTGTTTTTTGAGAGGTACTGGAACAGGGGTTATCAATCTTTTCAGGCCAtgtccccaaaataacaatgccagtagCTCATGACCGCCATTATCCTTGGGGTTGGATTTAAATATAGATTCCTCGCACACACATCAATAGGCAAATATTCAGTAATTttccttcgggttagtcccttatttgtcatggggtcaccacagaggaatgaaccaccaactattctaaaatatattatgccctttcagtcgcaacccagtactcgtACCCATATATGGCCAATTTGTTTAATCCACGTCACCTATAGCacatggggaaaactggagcacccggaggaagcccatgttcgcgtgggtttcctccgggtgctctgatttcctccacagtccaaagacatgcagtatgggtgaattgaatggaaaaattggctatagtgtacgTATGTaaatgcaagaatgtatggggttgctgctggaagggcttctgctgcgtaaaacacatgctggataagttggcggttcattctgctgtggcgaccctggattaataaagggactatgcttaaaagaaaatgaatgaatgattgaattacaAGCAGTCAAAGTTGTCTCATAGTAAATATGTTGTGAATATTGGCCTATACTGATTTGTGTATGTACCCTGTAACAAGGACACCCTTATGTAAAATacattcattcattcattcatttttttttcgacttagtctctttattaatctggggtcgccacagtggaatgaatcgccaacttattgttggactttgcatgtctttggactgtgggggaaaccagagcacccagagaaaaccaatgcgaacacggggagaacatgcaaactccacacagaaa
>TCONS_00051991
AGTGACaagctatatttatatatttatctgtgTGTGAAATGTCAGCGACTGGGTTTTGGATGCTGCTGTATTGATCACAACAGCTGGATCACTGGAAGCGGATTATTTCTGCAGATGTGAGCGCGCACGCAAGAGCGTCAACCATCGCGAACGAGTCACGAGATGCTTCAGGAAAACGTTGATAAGCGTTGTTCTCTGATAAAAACCGGCCTAGCTTCGATGTAGAGCGAACGAAAGCCTCAGGAACTCTGCAGACCCTTCTCTTGTGGCTAGTTGCTGATCGAGTTCCCTGCGACTTTGAGCATGTCTATAACGGACCACAGCCCCACCACTGGGGTCGTCACCATTATTGTAATACTCATCGCCATCGCAGCATTGGGTGCTTTAATTCTGGGCTGTTGGTGCTACTTGCGGCTGCAGCGCATCAGTCAGTCTGAAGACGAGGAGAGCATCGTGGGCGAAGGTGAAACCAAGGAGCCCTTCCTACTAGTCCAGTATTCAGCACGGGGCCCGCGGGTCGAGCACAAGACCAAACTCACTCCTAACGGCACCGAGAGCCACACTTAGCTCCCTCAACAGTGCGTACTATGTAGACTCAGTCTCAATCAGCACTGAAATGAAAGCACTCCACGCTGATGAACCAAGACCAACCTAGTGCATGCAGTTGTCTAGTTGCTTTGACTGTTGATTTGTTCCCGACCCATTTTGTGGTGGTAGAGCCCTGTTATAATGTGAAATCGACGACAAGTGTACGAGTTTTGTGCAATGATGTTTATTTGTAAAGACGTAGCCGGTTTATGAAGATAAATTAAGACTAAAAAGCCGTTCACATCAAGGATGATAACTATAAACTTAATGATATAGCTACAAAAAAGTCCTATTATGCTGTGGATTTTGTTTTTTGAGAGGTACTGGAACAGGGGTTATCAATCTTTTCAGGCCAtgtccccaaaataacaatgccagtagCTCATGACCGCCATTATCCTTGGGGTTGGATTTAAATATAGATTCCTCGCACACACATCAATAGGCAAATATTCAGTAATTttccttcgggttagtcccttatttgtcatggggtcaccacagaggaatgaaccaccaactattctaaaatatattatgccctttcagtcgcaacccagtactcgtACCCATATATGGCCAATTTGTTTAATCCACGTCACCTATAGCacatggggaaaactggagcacccggaggaagccca

Function

symbol description
snn Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Orthologous to human SNN (stannin).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1987 Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Orthologous to human SNN (stannin).

Ensembl:

ensembl_id ENSDARG00000099888

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051985 False 1569 mRNA 0.45 6 43347517 43821191
TCONS_00051991 True 1232 mRNA 0.46 2 43813819 43821381

Neighbor

gene id symbol gene type direction distance location
XLOC_026695 NA coding downstream 158432 43187194 ~ 43189085 (-)
XLOC_026694 NA coding downstream 320782 43024821 ~ 43026735 (-)
XLOC_026693 mafk coding downstream 365778 42964045 ~ 42981739 (-)
XLOC_026692 BX908797.1 coding downstream 378973 42918143 ~ 42968544 (-)
XLOC_026691 CABZ01079183.1 coding downstream 481317 42866083 ~ 42866200 (-)
XLOC_026700 rmi2 coding upstream 7164 43828545 ~ 43835055 (-)
XLOC_026701 mslna coding upstream 14177 43835558 ~ 43872889 (-)
XLOC_026702 BX682557.2 coding upstream 45404 43866785 ~ 43875129 (-)
XLOC_026703 BX682557.1 coding upstream 57075 43878456 ~ 43889443 (-)
XLOC_026704 ubfd1 coding upstream 120651 43942032 ~ 43959873 (-)
XLOC_026690 NA non-coding downstream 600733 42548944 ~ 42746784 (-)
XLOC_026689 NA non-coding downstream 973918 42371784 ~ 42373599 (-)
XLOC_026708 NA non-coding upstream 290164 44111545 ~ 44124370 (-)
XLOC_026709 NA non-coding upstream 511366 44332747 ~ 44335853 (-)
XLOC_026716 NA non-coding upstream 1718405 45539786 ~ 45543451 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G20797 snn,LOC107564698,LOC107703342 non-coding NC_056701.1 CM032070.1 17039191 ~ 17042404 (+)