LOC110532025 (LOC107737655)


Basic Information

Item Value
gene id LOC110532025
gene name LOC107737655
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 39337906 ~ 39354045 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615612.2
cagagatgtttttttttttattttaatttttttgtaaAACGACCCGGAAGAAGTTAGTGCAAAATGTGATATCGGGAGACCGAGGTCAGAAATTCTCTCTCACAACCATCTTGGATATAGAATCCTAACTCGACACAAGCATGCCTGGTGAAGCCACAGAGACAGTCCCGGTCACTGAGCAGGAGATGCAGCAGCCACAAGTTGAGACTGGGGTGTTGAGTTCCTCTGCTCCCCCTGAGATGGCTGTGTCTGACGTGACCAAGTCAGCCGCTTTGGAGAGTCCTGTGCCTCTAGGATCCGCCACTGTTCTTCCAGAGATCGAATCCCAACCGGTGTCAGAAATGGCTTTAGGAGAGGCATCTAGTGGACAACTTAATGGTGTAGAAGCAACACCTGAAGTTGAAGCAACCATTGTTGAAGAACGTAAAGAAACTGCTGAACAGGTCACCCAAGCACCAGAAGAGGTCATCATTCAAGATTCTGCTGAAGTTATAGAGGCTACCGTGGCAGCCACTCAAGATGCAGTGGCTGCAGAACCCGTGGCAGTGGCTGAAGAGACTCCGGTCCAAGAACCAGAACCTGCTGCTAAAGAGCCAATCGCAGACACTATTGATGGGATGGCACGTGTAACTCCAGAAGTCACCCCCGAGCCTGCAGTCGAGATGATCACTGAAGAGTTGGAGACTGTGAGTCTGGATCCATCTCTTGATGATGCCGTACTATGCACTGAAGTGGCCAGCTCGGACACTGGGGCCCCAGAACCTGAAGCACTGCCTGCTGATATGACCATTGACACGCTAAACGAAACTTCTGTTGAGAAAGAACCAATTGCGGCCTTCTCTGAGGCCGTCCAGACGAAGGTGATGTCAAATCGCGCAGGCCCGAccgtctccacctgtctcctgtCAGGGTCTGGCACTGAATCGGACAGCGATGAGTCTGTACCAGATCTGGAGGAACAGGACTCCGCACAGACACAGCAAGCACAGCTTGCAGCTGCTGCAGAAATAGATGAGGAACCCGTTAGCAAAGCCAAACAGAGCCGTAGTGAAAAGAAGGCACGAAAGGCAATGTCAAAGCTGGGTCTCAGGCAGGTGACGGGGGTCACCAGGGTTACCATTCGCAAGTCTAAGAACATCCTATTCGTCATCACCAAACCAGATGTCTACAAGAGCCCTGCATCAGACACTTACATTGTCTTTGGTGAGGCTAAGATCGAGGATCTCTCACAGCAAGCCCAGTTGGCAGCGGCAGAGAAGTTCAAGGTACAGGGAGAAGCTGTGTCGAACATCcaggaaaacacacagacacccaccgTACAGGAGGAGAGCGAAGAGGAAGAGGTTGACGAGACCGGGGTCGAGGTGAAGGACATTGAACTTGTGATGTCACAAGCCAACGTGTCGCGAGCGAAGGCTGTACGCGCcctgaaaaacaacaacaacgacaTTGTCAACGCAATTATGGAGTTGACGATGTAGGCTGCTGGAGTCGACAGGGTTCTGAAAAGTTGCTGATTTTAATCTATCGTTGGTACAATTTATACCCAAGATAGAAATAAAGATGTGGCTTGGTAAATCGA
>XM_021615613.2
cagagatgtttttttttttattttaatttttttgtaaAACGACCCGGAAGAAGTTAGTGCAAAATGTGATATCGGGAGACCGAGGTCAGAAATTCTCTCTCACAACCATCTTGGATATAGAATCCTAACTCGACACAAGCATGCCTGGTGAAGCCACAGAGACAGTCCCGGTCACTGAGCAGGAGATGCAGCAGCCACAAGTTGAGACTGGGTCTGGCACTGAATCGGACAGCGATGAGTCTGTACCAGATCTGGAGGAACAGGACTCCGCACAGACACAGCAAGCACAGCTTGCAGCTGCTGCAGAAATAGATGAGGAACCCGTTAGCAAAGCCAAACAGAGCCGTAGTGAAAAGAAGGCACGAAAGGCAATGTCAAAGCTGGGTCTCAGGCAGGTGACGGGGGTCACCAGGGTTACCATTCGCAAGTCTAAGAACATCCTATTCGTCATCACCAAACCAGATGTCTACAAGAGCCCTGCATCAGACACTTACATTGTCTTTGGTGAGGCTAAGATCGAGGATCTCTCACAGCAAGCCCAGTTGGCAGCGGCAGAGAAGTTCAAGGTACAGGGAGAAGCTGTGTCGAACATCcaggaaaacacacagacacccaccgTACAGGAGGAGAGCGAAGAGGAAGAGGTTGACGAGACCGGGGTCGAGGTGAAGGACATTGAACTTGTGATGTCACAAGCCAACGTGTCGCGAGCGAAGGCTGTACGCGCcctgaaaaacaacaacaacgacaTTGTCAACGCAATTATGGAGTTGACGATGTAGGCTGCTGGAGTCGACAGGGTTCTGAAAAGTTGCTGATTTTAATCTATCGTTGGTACAATTTATACCCAAGATAGAAATAAAGATGTGGCTTGGTAAATCGA
>XM_036987947.1
cagagatgtttttttttttattttaatttttttgtaaAACGACCCGGAAGAAGTTAGTGCAAAATGTGATATCGGGAGACCGAGGTCAGAAATTCTCTCTCACAACCATCTTGGATATAGAATCCTAACTCGACACAAGCATGCCTGGTGAAGCCACAGAGACAGTCCCGGTCACTGAGCAGGAGATGCAGCAGCCACAAGTTGAGACTGCCGCACCCTCTGCCCCTGCAAGTGTGGCTACCTCCCAGGAACCCCAGGCTGCTTCTGGCCCTGCCAAGCCCAAAGGCAAAGAGGCCAAGGGTGGCTCGACCCCAAAGGCTGTCCCTGGCAGAAGAAAAAAGACCTCGAtatctgcctcctcctcttctcctacctCCCCAAAGCAAACCTCCTCAACACCCTGTTCCCCCTTAGCTACCTCACCTGGGGCATCTGGAGCTCCCAGCCAGGGCAACCGTGCTGTCCCAAAGGTTGTAAAGGCTGGCAAACAAGGAAAGGCTAAGAAAGGAGAGGCTTTCAAGCCTGCTGTTGACCTGCCAGCCCCAGCCCAGGCTCCTGCCCCCACAGAGGCCAAACCTGTTCCTATTGAGCTTAAAGCTGCTCCTGCACCAGTAGTGGCCATGCCAGCACCTGTTGCTGCAGATCCTGCACCTGCCTCACCCGTCTCTCCCAAGCCTGAGGCTTCCCCTGTGGCCTTCAAAGTGACCTCAAAGCCTGCTGCATCAGCCCCTATGTCATTTGCTGATGCTGTTGCCTCTAGCCCACTTAAAGCTGCCCCTGAAATGCCCAATGCCAAGCCTAAGCCTGTGCCCAAAGCTGAGGTGAAAGAGGTCAAGGCAGCCCCTGCACCAGCTAAGCCTGCTCTGGAGGATGATGACCTTCCACCTCTCATTCCACCAGAGGAGCCAGTAAAGATGCCAGTCTACTCACCCCCTAAAGTAGTAGAGGCTCCTAAGCCTGCCCTAGTTGCTTCTCCAGCTCCCCCTAAACCAGCTCCAGTTGAGCCTGTTGTAGCTGCACCAGCTCCGCCCAGGCCTGCGCCAATTAAGCCCGTTGTAGCTGCACCAGCTCCACCCAAGCCTGCGCCAATTAAGCCCGTTGTAGCTGCACCAGCTCCACCCAAGCCTGCGCCAATTAAGCCCGTTGTAGCTGCACCAGCTCCGCCCAAGCCTGCGCCAATTAAGCCCGTTGTAGCTGCACCAGCTCCGCCCAAGACTTGCCCAGTTGAGCCCGTTGTAGCTGCACCAGCTCCGCCCAAGCCTTGCCCAGTTGAGCCCGTTGTAGCTGCACCAGCTCCACCCAAGCCTGCGCCAATTAAGCCCGTTGTAGCTGCACCAGCTCCGCCCAAGCCTTGCCCAGTTGAACCTGTTGTAGCTGCGCCAGCTCCACCCAAGCCTGCGCCAAAAAAGCCTGTTGTAGCTGCACTAGCTCCGCCCAAGCCTTGCCCAGTTGAGCCCGTTATAGCTGCGCCAGCTGCACCCAAGCCTGCGCCAAATAAGCCTGTTGTAGCTGCACCAGCTCCGCCCAAGCCTTTACCAGTTGAGCCTGTTGTAGCTGCACCAGCTCCGCCCAAGCCTGCGCCAATTGATCCTGTTGTAGCTTCCCCTAAGCCTGTTGAAGTAGCCATTGTACCACCACCTCCAGTTTCAAAACCTGCCCCCACCACTGCTAAAATCCCAACCAAACCGGAGCCTGTGACCAAGAATGAGGGGTCTGGCACTGAATCGGACAGCGATGAGTCTGTACCAGATCTGGAGGAACAGGACTCCGCACAGACACAGCAAGCACAGCTTGCAGCTGCTGCAGAAATAGATGAGGAACCCGTTAGCAAAGCCAAACAGAGCCGTAGTGAAAAGAAGGCACGAAAGGCAATGTCAAAGCTGGGTCTCAGGCAGGTGACGGGGGTCACCAGGGTTACCATTCGCAAGTCTAAGAACATCCTATTCGTCATCACCAAACCAGATGTCTACAAGAGCCCTGCATCAGACACTTACATTGTCTTTGGTGAGGCTAAGATCGAGGATCTCTCACAGCAAGCCCAGTTGGCAGCGGCAGAGAAGTTCAAGGTACAGGGAGAAGCTGTGTCGAACATCcaggaaaacacacagacacccaccgTACAGGAGGAGAGCGAAGAGGAAGAGGTTGACGAGACCGGGGTCGAGGTGAAGGACATTGAACTTGTGATGTCACAAGCCAACGTGTCGCGAGCGAAGGCTGTACGCGCcctgaaaaacaacaacaacgacaTTGTCAACGCAATTATGGAGTTGACGATGTAGGCTGCTGGAGTCGACAGGGTTCTGAAAAGTTGCTGATTTTAATCTATCGTTGGTACAATTTATACCCAAGATAGAAATAAAGATGTGGCTTGGTAAATCGA

Function

NR:

description
PREDICTED: nascent polypeptide-associated complex subunit alpha-like isoform X3

GO: NA

KEGG:

id description
K03626 EGD2, NACA; nascent polypeptide-associated complex subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615612.2 False 1582 mRNA 0.50 9 39337906 39354045
XM_021615613.2 False 883 mRNA 0.48 8 39337906 39354045
XM_036987947.1 True 2383 mRNA 0.55 9 39337906 39354045

Neighbor

gene id symbol gene type direction distance location
LOC110532024 ptges3 coding downstream 3752 39325986 ~ 39334154 (-)
baz2a LOC106571938 coding downstream 22347 39272822 ~ 39315559 (-)
LOC110532022 LOC106571939 coding downstream 67091 39267325 ~ 39270815 (-)
LOC110532021 LOC106571935 coding downstream 76073 39258488 ~ 39261833 (-)
LOC110532017 LOC106571931 coding downstream 318445 38996511 ~ 39019461 (-)
LOC110532028 prim1 coding upstream 184 39354229 ~ 39363121 (-)
LOC110531166 LOC106571945 coding upstream 61805 39415850 ~ 39444499 (-)
LOC110532033 NA coding upstream 160548 39514593 ~ 39518610 (-)
LOC110532036 LOC106571950 coding upstream 191866 39545911 ~ 39556753 (-)
LOC110532037 LOC106571949 coding upstream 205902 39559947 ~ 39634862 (-)
G802564 NA non-coding downstream 37273 39288021 ~ 39300633 (-)
G802558 NA non-coding downstream 89442 39247759 ~ 39248464 (-)
G802551 NA non-coding downstream 100502 39233311 ~ 39237404 (-)
G802465 NA non-coding downstream 198921 39135095 ~ 39138985 (-)
G802189 NA non-coding downstream 228005 39109687 ~ 39109901 (-)
G802606 NA non-coding upstream 41451 39395496 ~ 39395769 (-)
G802623 LOC106571947 non-coding upstream 127483 39481528 ~ 39542652 (-)
G802672 adcy6 non-coding upstream 151762 39505807 ~ 39507225 (-)
G803065 NA non-coding upstream 328243 39682288 ~ 39682492 (-)
G803080 NA non-coding upstream 376919 39730964 ~ 39731196 (-)
G802149 LOC106581475 other downstream 263186 39074481 ~ 39074720 (-)
G802138 NA other downstream 276525 39050530 ~ 39061381 (-)
G802100 NA other downstream 341874 38966456 ~ 38996032 (-)
LOC110532015 LOC106566767 other downstream 496394 38839265 ~ 38841685 (-)
G800318 NA other downstream 1992759 37344395 ~ 37345147 (-)
G802602 LOC106571943 other upstream 26705 39380750 ~ 39383210 (-)
G802609 NA other upstream 57297 39411342 ~ 39414326 (-)
G803170 LOC106571959 other upstream 590035 39944080 ~ 39949140 (-)
LOC110531168 LOC106571968 other upstream 607422 39961467 ~ 39996984 (-)
selenok selenok other upstream 1041687 40395732 ~ 40450018 (-)

Expression


Co-expression Network