LOC110532028 (prim1)


Basic Information

Item Value
gene id LOC110532028
gene name prim1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 39354229 ~ 39363121 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110532028
ATGTTAGCTGCTGATTATGACCAGGCCTCTCTACCGGAACTAATTGCCCCTCTACTACTGCCGACTTTTCCCCTTTCTCTCAATATTACCGGTGGCTGAACCATGGAGGAGtgACAAAGAACTACATCCAAAATCAAGAGTTCTCCTTCACGTTGAAGGATGACATCTACGTACGGTATCAGTCGTTCAGCACGCAGAGCAAGCTGGAGGAGGCGATGCAAAAGATGGACCCGTACAAGATTGACATTGGGGCAGTTTACTGTCACTGGCCCAATCAGCATAACACAGTCAAGTCTGGATCCTTCCAGGCTCTTGAGAAGGAGCTGGTGTTTGATATTGATATGACAGACTATAATGATGTCAGAAGCTGTTGCACTGCTGCAGACATCTGCCCAAAGTACTGGACTCTGATGACTATTGCTCTCTGTATCCTGGACAGGGCACTTCGAGGGGATCACgaatgcatacatttattttatgtATGGGTGATCCAACTTTCCCCAGTATGCTCTAGTAGGACAGGACATACTGAGCAGCAAAGAGGCTGCGGACAAAGTGCTGGCCCTTGTGCCTGAAGATGTCAGAAAGGAGCTGCTGCAGTGCTTCCAGACTGAAAAAACCCTGAGAAGCGCTGGTGTATATTTAAGACTCTGGTCCAAAACAAACGTACGACTGCCAAGGGCCATTACTTTGAGAAGGAGATCATGTGGCAGTACTGTTACCCTTGGGTTGATGTGAACGTCAGTAAAGGAGTCAACCACTTGCTGAAGAGCCCCTTCAGCGTCCATCCCAAAACGGGGCGGATCTCTGTTCCTATTGACCTGAGAGAACTGGATCGCTTTGACCCCTGTGATGTGCCCACTATCAGTCTGATCTGTGAGGAGCTGGATCGGCCCAAGACagcaggaggaagagaaggaagaaccCAAGGAAAAGCAGGAGAGCGATGGAAGAGAGACTACAAACGAACAAGCTTGGGGAAGTATGTGAAACTGTTAGATGAATTCCTGGAAGGGATGGCTCGCTCAAGGAAAGGGGAGTATCTTAAAAAGAGTGATCTTCAAAAGGACTTCTAGCCCTTAGCGGTGTCCAACGGAATACTGTCTGATGCTGGGATTGGTACCTACATTGGTTGGCTAATCTTAAACCATCCCGTCATCAGTTGTTTATAATATGACAGTTAAAGATGGAGAACACACATTAGATACACTGTAAACAAATGGTTTGTTTGAGAATTGTCATGCAAATATTTGAAATCAACAATTGAAAAATCAGTTGTGCAAaacttttatatttttattttattagttaagaacaaaatcttattttcaatgacagcctaggaacagtgggttaactgcctgttcaggggcagaacgacagatttgtaccttgtcagctcagggatttgaacttgcaacctttcggttactagtccaacgctctaaccactaggctaccctgcctccccatatATAGCCTATTGTTTTCTAATTAAAATGACTTTATACTACA

Function

symbol description
prim1 Predicted to enable DNA primase activity. Predicted to be involved in DNA replication, synthesis of RNA primer. Predicted to act upstream of or within DNA replication. Predicted to be part of alpha DNA polymerase:primase complex. Is expressed in several structures, including blastodisc; head; hematopoietic system; nervous system; and pectoral fin musculature. Orthologous to human PRIM1 (DNA primase subunit 1).

NR:

description
DNA primase small subunit

GO:

id name namespace
GO:0006269 DNA replication, synthesis of RNA primer biological_process
GO:1990077 primosome complex cellular_component
GO:0003896 DNA primase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110532028 True 1515 mRNA 0.45 11 39354229 39363121

Neighbor

gene id symbol gene type direction distance location
LOC110532025 LOC107737655 coding downstream 184 39337906 ~ 39354045 (-)
LOC118966241 NA coding downstream 14283 39339872 ~ 39339946 (-)
LOC118966242 NA coding downstream 15301 39338855 ~ 39338928 (-)
LOC118966240 NA coding downstream 16065 39338091 ~ 39338164 (-)
LOC110532024 ptges3 coding downstream 20075 39325986 ~ 39334154 (-)
LOC110531166 LOC106571945 coding upstream 52729 39415850 ~ 39444499 (-)
LOC110532033 NA coding upstream 151472 39514593 ~ 39518610 (-)
LOC110532036 LOC106571950 coding upstream 182790 39545911 ~ 39556753 (-)
LOC110532037 LOC106571949 coding upstream 196826 39559947 ~ 39634862 (-)
LOC110532039 LOC106571948 coding upstream 277758 39640879 ~ 39675631 (-)
G802564 NA non-coding downstream 53596 39288021 ~ 39300633 (-)
G802558 NA non-coding downstream 105765 39247759 ~ 39248464 (-)
G802551 NA non-coding downstream 116825 39233311 ~ 39237404 (-)
G802465 NA non-coding downstream 215244 39135095 ~ 39138985 (-)
G802189 NA non-coding downstream 244328 39109687 ~ 39109901 (-)
G802606 NA non-coding upstream 32375 39395496 ~ 39395769 (-)
G802623 LOC106571947 non-coding upstream 118407 39481528 ~ 39542652 (-)
G802672 adcy6 non-coding upstream 142686 39505807 ~ 39507225 (-)
G803065 NA non-coding upstream 319167 39682288 ~ 39682492 (-)
G803080 NA non-coding upstream 367843 39730964 ~ 39731196 (-)
G802149 LOC106581475 other downstream 279509 39074481 ~ 39074720 (-)
G802138 NA other downstream 292848 39050530 ~ 39061381 (-)
G802100 NA other downstream 358197 38966456 ~ 38996032 (-)
LOC110532015 LOC106566767 other downstream 512717 38839265 ~ 38841685 (-)
G800318 NA other downstream 2009082 37344395 ~ 37345147 (-)
G802602 LOC106571943 other upstream 17629 39380750 ~ 39383210 (-)
G802609 NA other upstream 48221 39411342 ~ 39414326 (-)
G803170 LOC106571959 other upstream 580959 39944080 ~ 39949140 (-)
LOC110531168 LOC106571968 other upstream 598346 39961467 ~ 39996984 (-)
selenok selenok other upstream 1032611 40395732 ~ 40450018 (-)

Expression


Co-expression Network