XLOC_026697 (uncx)


Basic Information

Item Value
gene id XLOC_026697
gene name uncx
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 43352556 ~ 43356082 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051986
ACGCTTCTCATTGGTCTCAAATTCCCAGAGCCTAAGCTAATTATTGGAAGCTTCGTGTTGATAAAGAACAGCTCATCCTACTCTCCACATCATGTCCCCTCCTCGCCGGCCACTCTCGCTGCATGTTTTTTAAATTCACATCACCAACCACCAGACGTCGTTTCCTTTTGCCTGGGAGATGATGGACAGCAGGATACTGGATCCACCTCATGCCCAGTTCGGAGGCTCGCTCGGTGGGATGGTGAGCTTTCCGTACCATCTAAGCCACCATCATGTGTACGAATTAGCCGGTCATCAACTTCAATCTACAGCCGCGGTTCCTTTCTCAATAGACGGATTACTTAACGGCTCCTGCACGGCTTCTGTGGTGAATTCTAACCCCCTCTTGTCGTCTGGCTGCGGTATGAATGGAGATAACCAGCAGTACAAACTGACAGATTCGGGGGATCCAGACAAGGATAGCCCGGGTTGTAAAAGAAGACGAACTCGTACCAATTTCACTGGCTGGCAGCTGGAAGAATTAGAGAAGGCTTTTAATGAAAGTCACTATCCAGATGTGTTCATGAGGGAAGCACTTGCTCTAAGATTGGATTTGATAGAATCAAGGGTGCAGGTATGGTTTCAAAACCGCAGGGCAAAATGGAGAAAAAAGGAAAATACGAAAAAAGGGCCCGGGCGACCTGCACACAACTCTCATCCAACGACCTGCAGTGGTGAGCCAATGGACCCAGAGGAAATTGCACGCCGAGAACTAGAGAGGCtagagaaaaagaaaaggaaacaaGAAAGAAGGCTTTTAAAGTCTCAAAACAAACTCCTTCCCGGGGACTTATTTCACACCCCAGGATCTGATAGTGACAGTGGCTTGTCACAAATTACGGACTCTGAACAAAGCCTCCATTGCGACATGGGCCGAAACCAAACGCAACCAAGCTGTGACCAAACTCCACAGAAACTCCAGAACCAAAGAAACGCAGACCAAGACGCGAGTGGATCCGAGCTGGACTCGTCCGACAGCGGTCAGCAGTCAAACCTGTGCTCCAACAGTAGGTCTTCCGCTCTTCAAAAACTGAACCCTTTCAGTGTGGAAAGCCTCCTGTCAGACTCCAGGCCGAGGCGCAAGCCGCCCATGGACTTTCCAGTGCCGACTCCACGACCTTTGATAGGCAAAGGACATTTTTTACTGTACCCAATTACACAACCCCTCGGTTTCATTGTTCCACAGACTGCTTTGAAGAGCACAGCACCAGGTCCTGATACTGAGAATGGCCAGAAAGGGCCTGCTACTGACATTACATTTGCTGGAAACCCAGGACACAGGAACGCCAAGGAGAACAACAGTGTAAACAACAACAGCGGCGCGCGAGCAATCAAAGGCCAGGTCAGTCAGTCGGGCAACATATCGTGTTCAACACAAAGCAGTTCACCACAGACTACCATTAATGGTCACTCGGCGGGCAGCTGTAACGAAAGATGCCCACAAGATATAGAGTTAGAACTCGTCGATCCAAAGTCTCCACAGTCGGAGAAAAAGGAGCAGTCGTTACCAGACTATCCACCACAAAATTCAGAATCAGCGACAACCAGCAAGGACACCGACAAAGACTCAGTCGACGTCGATATGGAATAAATGAAATCATAGTAGAAACCGAGGAGCGTGTCGATAAGTGAAGAGGGGAAAAGTCGTCATATCGAAACGTATCGTTTTCATTGACATATTTATATTCTGGTTAGGGGAAATATCTGTGTGAataatttgtgtatgtgtgtggtgggCTATCAAATGTTTATTGAACAAATAGCAGCAGCTCCCTGTATAAGAAACTGTTAAAAAACCCAAGACAAAACCTCAAACGTTGTACAAAGCATTaagatatttatatatgtaagtttttcataaataaatcaattgtaTACAAAAAA

Function

symbol description
uncx Predicted to enable sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of gene expression. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including brain; forebrain neural rod; olfactory placode; segmental plate; and spinal cord neural tube. Orthologous to human UNCX (UNC homeobox).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080509-1 Predicted to enable sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of gene expression. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including brain; forebrain neural rod; olfactory placode; segmental plate; and spinal cord neural tube. Orthologous to human UNCX (UNC homeobox).

Ensembl:

ensembl_id ENSDARG00000102976

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051986 True 1923 mRNA 0.47 3 43352556 43356082

Neighbor

gene id symbol gene type direction distance location
XLOC_026695 NA coding downstream 163471 43187194 ~ 43189085 (-)
XLOC_026694 NA coding downstream 325821 43024821 ~ 43026735 (-)
XLOC_026693 mafk coding downstream 370817 42964045 ~ 42981739 (-)
XLOC_026692 BX908797.1 coding downstream 384012 42918143 ~ 42968544 (-)
XLOC_026691 CABZ01079183.1 coding downstream 486356 42866083 ~ 42866200 (-)
XLOC_026698 axin1 coding upstream 222893 43578975 ~ 43686469 (-)
XLOC_026699 zgc:92162 coding upstream 401099 43757181 ~ 43770876 (-)
XLOC_026700 rmi2 coding upstream 472463 43828545 ~ 43835055 (-)
XLOC_026701 mslna coding upstream 479476 43835558 ~ 43872889 (-)
XLOC_026702 BX682557.2 coding upstream 510703 43866785 ~ 43875129 (-)
XLOC_026690 NA non-coding downstream 605772 42548944 ~ 42746784 (-)
XLOC_026689 NA non-coding downstream 978957 42371784 ~ 42373599 (-)
XLOC_026703 BX682557.1 non-coding upstream 522374 43878456 ~ 43889443 (-)
XLOC_026708 NA non-coding upstream 755463 44111545 ~ 44124370 (-)
XLOC_026709 NA non-coding upstream 976665 44332747 ~ 44335853 (-)
XLOC_026716 NA non-coding upstream 2183704 45539786 ~ 45543451 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_02264732_02268319 UNCX coding CI01000046 null 2264572 ~ 2268638 (+)